Trimin1|354300|estExt_Genemark1.C_Ctg_2270016 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354300
Unique Name	Trimin1\|354300\|estExt_Genemark1.C_Ctg_2270016
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	125

Homology

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BLAST of jgi.p|Trimin1|354300 vs. uniprot
Match: A0A835Z137_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z137_9STRA)

HSP 1 Score: 235 bits (599), Expect = 3.800e-78
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query:    1 MAQEVPKQQSLELERAALARYEKLQAEAVLPVTTGGGGAVAEAKTADGAFAHQGAMKPPMSPRSAQRESTLADFMGITSSTEAVARQLLQTHNWELEASIHAYYESPDSLPLAAVSVHGGDKGL 124
            MAQEVPKQQSLELERAALARYEKLQAEAVLPVTTGGGGAVAEAKTADGAFAHQGAMKPPMSPRSAQRESTLADFMGITSSTEAVARQLLQTHNWELEASIHAYYESPDSLPLAAVSVHGGDKGL
Sbjct:    1 MAQEVPKQQSLELERAALARYEKLQAEAVLPVTTGGGGAVAEAKTADGAFAHQGAMKPPMSPRSAQRESTLADFMGITSSTEAVARQLLQTHNWELEASIHAYYESPDSLPLAAVSVHGGDKGL 124

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354300 vs. uniprot

BLAST of jgi.p|Trimin1|354300 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z137_9STRA	3.800e-78	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.10		coord: 50..120 e-value: 1.2E-9 score: 40.0
None	No IPR available	PFAM	PF14555	UBA_4	coord: 71..108 e-value: 1.0E-12 score: 47.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..69
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 65..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_227	contig	Contig_227:106136..107853 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354300	mRNA_17568	Tribonema minus UTEX_B_3156	mRNA	Contig_227 105752..107853 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354300|estExt_Genemark1.C_Ctg_2270016 ID=Trimin1|354300|estExt_Genemark1.C_Ctg_2270016|Name=jgi.p|Trimin1|354300|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
MAQEVPKQQSLELERAALARYEKLQAEAVLPVTTGGGGAVAEAKTADGAF
AHQGAMKPPMSPRSAQRESTLADFMGITSSTEAVARQLLQTHNWELEASI
HAYYESPDSLPLAAVSVHGGDKGL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009060	UBA-like_sf