mRNA_17568 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354300
Unique NamemRNA_17568
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354300 vs. uniprot
Match: A0A835Z137_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z137_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.060e-75
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 MAQEVPKQQSLELERAALARYEKLQAEAVLPVTTGGGGAVAEAKTADGAFAHQGAMKPPMSPRSAQRESTLADFMGITSSTEAVARQLLQTHNWELEASIHAYYESPDSLPLAAVSVHGGDKGL 372
            MAQEVPKQQSLELERAALARYEKLQAEAVLPVTTGGGGAVAEAKTADGAFAHQGAMKPPMSPRSAQRESTLADFMGITSSTEAVARQLLQTHNWELEASIHAYYESPDSLPLAAVSVHGGDKGL
Sbjct:    1 MAQEVPKQQSLELERAALARYEKLQAEAVLPVTTGGGGAVAEAKTADGAFAHQGAMKPPMSPRSAQRESTLADFMGITSSTEAVARQLLQTHNWELEASIHAYYESPDSLPLAAVSVHGGDKGL 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354300 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z137_9STRA1.060e-75100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_227contigContig_227:105752..107853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354300|estExt_Genemark1.C_Ctg_2270016
BRITEko00000,ko00001
KEGG Pathwayko04141,map04141
KEGG koko:K14012
GOsGO:0000045,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006914,GO:0006996,GO:0006997,GO:0006998,GO:0007030,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010256,GO:0010498,GO:0010921,GO:0016043,GO:0016236,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0019899,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031323,GO:0031399,GO:0031468,GO:0032182,GO:0032268,GO:0035303,GO:0035304,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043666,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0051117,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051603,GO:0060255,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575,GO:1905037
Preferred namePUX4
DescriptionDomain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
COG categoryY
Max annot lvl35493|Streptophyta
EggNOG OGsKOG2086@1|root,KOG2086@2759|Eukaryota,37MU8@33090|Viridiplantae,3GF53@35493|Streptophyta,3KS10@4447|Liliopsida,3IF77@38820|Poales
Evalue0.000119
Seed ortholog4558.Sb10g024840.1
Hectar predicted targeting categoryother localisation
TranscriptId354622
TrackFilteredModels1
ProteinId354300
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354300gene_17568Tribonema minus UTEX_B_3156 geneContig_227 105752..107853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354300Trimin1|354300|estExt_Genemark1.C_Ctg_2270016Tribonema minus UTEX_B_3156 polypeptideContig_227 106136..107853 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17568_4exon_17568_4Tribonema minus UTEX_B_3156 exonContig_227 105752..106193 -
exon_17568_3exon_17568_3Tribonema minus UTEX_B_3156 exonContig_227 106439..106485 -
exon_17568_2exon_17568_2Tribonema minus UTEX_B_3156 exonContig_227 106936..107046 -
exon_17568_1exon_17568_1Tribonema minus UTEX_B_3156 exonContig_227 107695..107853 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17568UTR3_17568Tribonema minus UTEX_B_3156 three_prime_UTRContig_227 105752..106135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17568CDS_17568Tribonema minus UTEX_B_3156 CDSContig_227 107695..107853 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17568 ID=mRNA_17568|Name=jgi.p|Trimin1|354300|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_227:105752..107853- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGGAGGTCCCCAAGCAGCAAAGCCTGGAGCTGGAGCGAGCGGC
GCTAGCCAGATACGAAAAGCTGCAGGCGGAGGCAGTGCTGCCTGTGACCA
CAGGAGGGGGCGGTGCCGTGGCTGAGGCTAAGACAGCTGATGGTGCATTT
GCACATCAGGGTGCCATGAAGCCGCCCATGTCGCCGCGCTCCGCGCAGCG
CGAGAGCACGCTCGCCGACTTCATGGGCATCACCAGCTCAACAGAGGCGG
TCGCACGGCAGCTGCTGCAGACCCACAACTGGGAGCTGGAGGCGAGCATT
CATGCGTACTACGAGAGCCCCGACTCCCTTCCCCTTGCTGCCGTTTCCGT
GCACGGTGGCGACAAGGGGTTGTAGCCCCCCCCCCCCTCCCTCCCCTCGC
TGCCGCTTCGTGTGACGGCCGCGACGAGAGGTCACGATGATGCGCACGCC
TCTTCTCTGCTGCTGGCCCGCCGCCGTCTGCGCGGAGCGGCGTGCACGCG
GCGCGCACACGGCTTGTGCTGAGGCACCGGCCTGCACTTTGCTGCGCAGC
GGGGGTGGCGCCGTGCTGCTGTGCTGCTGCTGCCGTGCTGCAAACTGCAG
CACGAATGGCCGCCGGTGCGGGCGCAGTTGTGGTTTGCACGCAGTGGCGG
TTTGAACCGATGGCGGCGCTCCATCAGTTGCTGCTGCGTGCGTGCAAGTG
ACCCTGTTGGGACATAAATAATGTGAATAGCGACCGTGCGGCTTTTGCAT
GGCCCGGCG
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protein sequence of jgi.p|Trimin1|354300

>Trimin1|354300|estExt_Genemark1.C_Ctg_2270016 ID=Trimin1|354300|estExt_Genemark1.C_Ctg_2270016|Name=jgi.p|Trimin1|354300|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
MAQEVPKQQSLELERAALARYEKLQAEAVLPVTTGGGGAVAEAKTADGAF
AHQGAMKPPMSPRSAQRESTLADFMGITSSTEAVARQLLQTHNWELEASI
HAYYESPDSLPLAAVSVHGGDKGL*
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mRNA from alignment at Contig_227:105752..107853-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17568 ID=mRNA_17568|Name=jgi.p|Trimin1|354300|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2102bp|location=Sequence derived from alignment at Contig_227:105752..107853- (Tribonema minus UTEX_B_3156 )
ATGGCTCAGGAGGTCCCCAAGCAGCAAAGCCTGGAGCTGGAGCGAGCGGC
GCTAGCCAGATACGAAAAGCTGCAGGCGGAGGCAGTGCTGCCTGTGACCA
CAGGAGGGGGCGGTGCCGTGGCTGAGGCTAAGACAGCTGATGGTGCATTT
GCACATCAGGTGAGGCATCATGTCTCCGGCTGGAGATTGACGAACGTGTT
TTTTGACAACGATGTGCGAAGGTGGCTTCACCTGACCCGCAGGGCCTGCC
TGAGTTTCCGGGCGCCTCATGTTGCATGACCTTAACGAAAGCGGGGCAAC
ACCTTGAGCTGCGCACAGCGCCGGGGATCGCACAACTGCTGTACAAGGAG
CAGTTATTTCCTGTGAGCGTGCGTGCCGGATTATGCGTGCGGTGAATGTG
GGACAAAGGAGCAACTCATGCGGCTATGATCATTATGGGACAGTAACGTA
CGGTGAACCTGCGTGCTGCTGTGTTGATGCTAGTCTCTGGGGCCACTGAT
AAGCACGCGTAACATGCACTGAAGCAGTGTTGGTTTACCATTTTTGTAGA
GCAGCACCGCACTAATAGCCATGGGCGCACGGCCGCGGCGGCGTACGCCC
CTGCGTCACCCAGTGACTGCGGATGCGCACGAAACACCTGACGCTCACTT
GGTGGGCACACAATACATATCTCAACGGCGCGCGATGCTGTATCTTCCCT
GGGCGCTGCACAGTTGCCATCGATTGCTGACACCACTGCTCTCTTGGCTT
GCAACCTCAATCACCCACTTCAAACACCGCACGCTGACTTGTCGCTGTTC
CCGCCAGGGTGCCATGAAGCCGCCCATGTCGCCGCGCTCCGCGCAGCGCG
AGAGCACGCTCGCCGACTTCATGGGCATCACCAGCTCAACAGAGGCGGTC
GCACGGCAGCTGCTGCAGGTGACACGCCGCGCGCCCGCTCTCCTACTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCCGCGTATTGCCTGCCGCT
CGCACAGCATTGCACTGCCGTTGACGATCGCCGGCCTGTGCGCGCGCTGC
CAACTCGCACCGGCGCGAGCCTTGCGCCTTCTGAACCGGCCGCGCGGCTG
GCGTGGGCATGCGTGCTGATCGCAGCGCGGTGAATGCTGCTTGTCGCGCG
GGCGCAACCCCCTGCAAGCTTTGCCAGCTAGGACCACTGCAGCACATGTG
CCGGCCAGCGAGTCAGTCAGCACTTCTGGCACGCATGCGTGTAATTGCAC
TTGGTGCAGCTATGCCTGGCGTGCCCACACCCGCCCCACTTTCATAACCT
CAGCTCTTCCACATCGCAAGTCTCAGGCCATGCTGACCTGCCTCGCTGCC
GTTCGCCTGCACGCGCAGACCCACAACTGGGAGCTGGAGGCGAGCATTCA
TGCGTACTACGAGAGGTAGTGACACACACACGCAGCGCGCTTCGGCACGC
GCCTCCGCGGCGCCCTGTGCAAGGGCAAATACACTCCGCCGTGGACGTGA
AAGCAACCTAACTCCCCTCGACCCCCCCCCCCCCCCCGGCTCCCGGTTAC
CGCGACGGTAGCGGTGCGAGTGTGCAGGGGCACGCCCACGCCCACGCCGT
TGCTCCGCGAGGGCAAACAGCGGCCGCCTTGGAGGCACGCACCCCCCCCA
TGTGCTTCAGCCCCGACTCCCTTCCCCTTGCTGCCGTTTCCGTGCACGGT
GGCGACAAGGGGTTGTAGCCCCCCCCCCCCTCCCTCCCCTCGCTGCCGCT
TCGTGTGACGGCCGCGACGAGAGGTCACGATGATGCGCACGCCTCTTCTC
TGCTGCTGGCCCGCCGCCGTCTGCGCGGAGCGGCGTGCACGCGGCGCGCA
CACGGCTTGTGCTGAGGCACCGGCCTGCACTTTGCTGCGCAGCGGGGGTG
GCGCCGTGCTGCTGTGCTGCTGCTGCCGTGCTGCAAACTGCAGCACGAAT
GGCCGCCGGTGCGGGCGCAGTTGTGGTTTGCACGCAGTGGCGGTTTGAAC
CGATGGCGGCGCTCCATCAGTTGCTGCTGCGTGCGTGCAAGTGACCCTGT
TGGGACATAAATAATGTGAATAGCGACCGTGCGGCTTTTGCATGGCCCGG
CG
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Coding sequence (CDS) from alignment at Contig_227:105752..107853-

>mRNA_17568 ID=mRNA_17568|Name=jgi.p|Trimin1|354300|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_227:105752..107853- (Tribonema minus UTEX_B_3156 )
ATGGCTCAGGAGGTCCCCAAGCAGCAAAGCCTGGAGCTGGAGCGAGCGGC
GCTAGCCAGATACGAAAAGCTGCAGGCGGAGGCAGTGCTGCCTGTGACCA
CAGGAGGGGGCGGTGCCGTGGCTGAGGCTAAGACAGCTGATGGTGCATTT
GCACATCAGGGTGCCATGAAGCCGCCCATGTCGCCGCGCTCCGCGCAGCG
CGAGAGCACGCTCGCCGACTTCATGGGCATCACCAGCTCAACAGAGGCGG
TCGCACGGCAGCTGCTGCAGACCCACAACTGGGAGCTGGAGGCGAGCATT
CATGCGTACTACGAGAGCCCCGACTCCCTTCCCCTTGCTGCCGTTTCCGT
GCACGGTGGCGACAAGGGGTTGTAG
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