Trimin1|354175|estExt_Genemark1.C_Ctg_2140015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354175
Unique NameTrimin1|354175|estExt_Genemark1.C_Ctg_2140015
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length135
Homology
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BLAST of jgi.p|Trimin1|354175 vs. uniprot
Match: A0A835Z103_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z103_9STRA)

HSP 1 Score: 288 bits (737), Expect = 7.110e-99
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 
Query:    1 MTHGAAVYVEGEEDEPVKNYMQMAQEYHVTAPYRDLKGRAKEARMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVERTGGMYKSSLDVAAESWCCAVS 134
            MTHGAAVYVEGEEDEPVKNYMQMAQEYHVTAPYRDLKGRAKEARMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVERTGGMYKSSLDVAAESWCCAVS
Sbjct:    1 MTHGAAVYVEGEEDEPVKNYMQMAQEYHVTAPYRDLKGRAKEARMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVERTGGMYKSSLDVAAESWCCAVS 134
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BLAST of jgi.p|Trimin1|354175 vs. uniprot
Match: A0A7S4HUM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUM7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.330e-7
Identity = 33/110 (30.00%), Postives = 55/110 (50.00%), Query Frame = 0 
Query:   18 KNYMQMAQEYHVTAPYRD-----------LKGRAKEA----RMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVE 112
            K+Y  +A++Y  T PYR             +   ++A    R VFFPC H+C+C +C  + +       +       MCP+C E+IKF++      +E +RYW W++ V+
Sbjct:  367 KDYPGLARQYKSTEPYRGNNPGGNPRCVLCRREGEDASVVLRRVFFPCEHRCVCNRCYREERMGPGRRAN-------MCPLCGEEIKFVAE--RNGSERERYWDWVEEVK 467
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354175 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z103_9STRA7.110e-99100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4HUM7_9STRA2.330e-730.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 38..95
e-value: 6.9E-9
score: 37.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_214contigContig_214:149270..151829 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354175mRNA_17828Tribonema minus UTEX_B_3156 mRNAContig_214 149144..151829 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354175|estExt_Genemark1.C_Ctg_2140015 ID=Trimin1|354175|estExt_Genemark1.C_Ctg_2140015|Name=jgi.p|Trimin1|354175|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
MTHGAAVYVEGEEDEPVKNYMQMAQEYHVTAPYRDLKGRAKEARMVFFPC
GHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTE
VQRYWQWIDAVERTGGMYKSSLDVAAESWCCAVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD