mRNA_17828 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354175
Unique NamemRNA_17828
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354175 vs. uniprot
Match: A0A835Z103_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z103_9STRA)

HSP 1 Score: 288 bits (737), Expect = 3.940e-98
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 
Query:    1 MTHGAAVYVEGEEDEPVKNYMQMAQEYHVTAPYRDLKGRAKEARMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVERTGGMYKSSLDVAAESWCCAVS 402
            MTHGAAVYVEGEEDEPVKNYMQMAQEYHVTAPYRDLKGRAKEARMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVERTGGMYKSSLDVAAESWCCAVS
Sbjct:    1 MTHGAAVYVEGEEDEPVKNYMQMAQEYHVTAPYRDLKGRAKEARMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVERTGGMYKSSLDVAAESWCCAVS 134
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BLAST of jgi.p|Trimin1|354175 vs. uniprot
Match: A0A7S4HUM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUM7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.140e-7
Identity = 33/110 (30.00%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:   52 KNYMQMAQEYHVTAPYRD-----------LKGRAKEA----RMVFFPCGHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTEVQRYWQWIDAVE 336
            K+Y  +A++Y  T PYR             +   ++A    R VFFPC H+C+C +C  + +       +       MCP+C E+IKF++      +E +RYW W++ V+
Sbjct:  367 KDYPGLARQYKSTEPYRGNNPGGNPRCVLCRREGEDASVVLRRVFFPCEHRCVCNRCYREERMGPGRRAN-------MCPLCGEEIKFVAE--RNGSERERYWDWVEEVK 467
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354175 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z103_9STRA3.940e-98100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4HUM7_9STRA7.140e-730.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_214contigContig_214:149144..151829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354175|estExt_Genemark1.C_Ctg_2140015
DescriptionRing finger
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2C2EW@1|root,2SGVY@2759|Eukaryota
Evalue3.5e-05
Seed ortholog157072.XP_008879184.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-01_009780.1
TranscriptId354497
TrackFilteredModels1
ProteinId354175
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354175gene_17828Tribonema minus UTEX_B_3156 geneContig_214 149144..151829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354175Trimin1|354175|estExt_Genemark1.C_Ctg_2140015Tribonema minus UTEX_B_3156 polypeptideContig_214 149270..151829 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17828_4exon_17828_4Tribonema minus UTEX_B_3156 exonContig_214 149144..149353 -
exon_17828_3exon_17828_3Tribonema minus UTEX_B_3156 exonContig_214 150350..150473 -
exon_17828_2exon_17828_2Tribonema minus UTEX_B_3156 exonContig_214 151240..151320 -
exon_17828_1exon_17828_1Tribonema minus UTEX_B_3156 exonContig_214 151714..151829 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17828UTR3_17828Tribonema minus UTEX_B_3156 three_prime_UTRContig_214 149144..149269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17828CDS_17828Tribonema minus UTEX_B_3156 CDSContig_214 151714..151829 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17828 ID=mRNA_17828|Name=jgi.p|Trimin1|354175|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_214:149144..151829- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCACGGCGCTGCGGTGTACGTCGAGGGCGAGGAGGATGAGCCAGT
CAAGAACTACATGCAGATGGCGCAGGAATACCATGTCACGGCGCCATACA
GAGATCTGAAGGGAAGGGCCAAGGAGGCGCGGATGGTGTTCTTCCCATGC
GGGCACAAGTGCATGTGCGAGAAGTGCGTGATGCAGCACAAGTACAGCTG
TGCAGGAGCCACTGACGCCGGCGAGGACTCGTGGACCATGTGCCCCGTGT
GCGCGGAGCAGATCAAGTTCATGAGCCTGTTCATCGACGGCAAGACTGAG
GTTCAGCGGTACTGGCAGTGGATAGACGCGGTGGAGAGGACGGGCGGCAT
GTACAAGTCGTCCCTCGACGTGGCGGCGGAGTCGTGGTGCTGCGCGGTGT
CCTAGGCCGCGTAGACCCGCGCCGCATCATGAACATTGAGTTGGCCACGC
CGCCTAGCACCTGACATGGAGCCTAGTCGGACCCCAACCGGTCTGATGCA
CAGCTCCTGCGTCTGTCCCCCTGGCATTGGA
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protein sequence of jgi.p|Trimin1|354175

>Trimin1|354175|estExt_Genemark1.C_Ctg_2140015 ID=Trimin1|354175|estExt_Genemark1.C_Ctg_2140015|Name=jgi.p|Trimin1|354175|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
MTHGAAVYVEGEEDEPVKNYMQMAQEYHVTAPYRDLKGRAKEARMVFFPC
GHKCMCEKCVMQHKYSCAGATDAGEDSWTMCPVCAEQIKFMSLFIDGKTE
VQRYWQWIDAVERTGGMYKSSLDVAAESWCCAVS*
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mRNA from alignment at Contig_214:149144..151829-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17828 ID=mRNA_17828|Name=jgi.p|Trimin1|354175|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2686bp|location=Sequence derived from alignment at Contig_214:149144..151829- (Tribonema minus UTEX_B_3156 )
ATGACTCACGGCGCTGCGGTGTACGTCGAGGGCGAGGAGGATGAGCCAGT
CAAGAACTACATGCAGATGGCGCAGGAATACCATGTCACGGCGCCATACA
GAGATCTGAAGGGAAGGTAGGGCACTTTCAAAACTTCTGCAAAATGAAGT
TATTGGGAATGTCAACACTTATCTGATGCAATCCTTCACGTCATGCCCGG
ATTTCGTGGTGCTGACAAACCTTTGAAACGAGAGTACGATACCATCAAAG
ATTATTTTAAGTCGAAGTCATGATGCACACATCATTGAAGTGTGTTAGCC
ATAGCAGCGAACACAGCGTGCGACCGAGTAGCTTCCCGGAGGCAGTAAGC
AAATTCTTTAGCATGACCTACCACACGTCGCCGACGAACATTCCTTCCAA
CCTCACCACAAAAGCAGAGTGCATGCAACTGCATCCATTCATGCGTGAGC
ATTTCGATGACTTTGTGCTCGCGCCTCTCTGTTGGCAGGCAAACTTGCAC
CATGTGCAGGGCCAAGGAGGCGCGGATGGTGTTCTTCCCATGCGGGCACA
AGTGCATGTGCGAGAAGTGCGTGATGCAGCACAAGTACAGGTACTTTCAG
ACTGCCATACGACATTTAGATTCCGTACAGCAAGCTTCAAGTTAGATGCC
ATTCATCTGGGCTTTTTCGCGCCCTGAGCGAGAATTAATAAAAAGTACAG
GTACACCCCTCTGAAAGGCATAGCACTGGCGCGCATCAGCTCAGCTCTGT
CGGCAGCGCACCATGGCGTACTCTTCGCTGTAATGACGCACATTGCGGAG
TGTAAGAGGGGGCAGATGGACGAAGACTTCGAGGGGCGGCAGATGCCATG
TGGCGATGTCGTTTAGAAGTGATCCGCATTGCTCATTGAGACACTTTCAA
AGTGTACACAAAACACATGTACATTCTGGTTGCAAGCTGGACATCCACCA
TATGCGCTTTTTCGCGCCCTATGCGAGAACTACTCAGGTACAACCTTAAC
AGAGTCCAGACCATTGCATCAGCGACACTGCTTTGCAATTCCTGCTTGCT
TCAAGGCAAGGTCCACGTTAAACAGCGTTCGATGGTTTCAATGCAGCTCT
TGTCTGTTGTCGTGGAGAATGAGGTCAAGCACGTGAGAGAGCTCGTGGCA
GTCTGTATCGCGTCAGCAACGCAGCTCTCCCGCGCCACAGCTCATCACGG
GCGCAGAAGTGACATCTAGCCGGCAACGAGCGTCATGTGGTCAGCAGCGG
TGCACATGCGCTCACCACAGCAGCTGCACACCACAACAACTTCCATTTTA
ACTAGCTGCAAAGTGATTGCGATCAGCTTCTGTGACTGGTTTGGTGTATG
CTGCAGCTGTGCAGGAGCCACTGACGCCGGCGAGGACTCGTGGACCATGT
GCCCCGTGTGCGCGGAGCAGATCAAGTTCATGAGCCTGTTCATCGACGGC
AAGACTGAGGTTCAGCGGTACTGGCAGTGGGTGAGTAATCACGGGCGTCC
ATAATTGCATCCTCGTCGACCAATCTGTTTGAGATAGTGATGGGCTGCAA
TTGACATGCATAGCACACAGCACCGAGATGTTTTCGCACAGATCTACCAG
TTTGTGACTCACGCTCAGAGTGCTGCGGAAGCAGGTCATGCACTTGATAG
ACTCCATTGAGCCAATGTCAGCAGTGCAAGACCAGATGGCCATCAACCGT
GAACCCGGCATACTGCAAGTATATCACATCCCTCTGCTGCAGACTCTGAT
TTGTGAAAATGATCAAACTGCTGCTCAGCTCTTTCCACCTGCTGCAGCCA
GTAGGGCCTTTCTCCCTGTTGACTCATTGCATTGCCCTATGTTGTGCATG
CAGGTGGAAGAGCAACGGCCAGCTCTGCCGCCGGGCTTCAGGACCAGCTT
CAAGGAGGCTGGCATTGTCTTGAAGGCAAGTGCTGGGACTGATTGATGCT
CAACATGCGCTCATTTCTACGAGTGATGTTCGGTTAGGTGAATAGCTTTG
CAGGTCCAGCGGGACCTCCTCTGGAACTCTACTTCAAGGTAAAGACTTGG
TAAAGCAGCCGAAAGGGGGGCAAGTGCAACAGTCAAGGGGTCAACTTGTG
CGTGCACATTGATGAAGTGGTTAATGTACTGGCACAGCGTTTGTTGCTTG
TGCTCACAGAGAGCAACCATGACATGCACAGCTGATCAGACCTGCACATC
GTTGGAAGTGTGGAGGCGAGGCCTTGCGACACCAGGGGCCAGCTTTGTGC
CTACCAGTGCAAACGCGCTCCAAGTTCATGCAAGCGGCGAAAGCGATACT
TGCGGCGACGGTGCAGCGGCTTTGCTTGCTTGTGTCTAATGATGATCAAT
GGCATGCTCAGTAGGTAGTGGACAACAGTGCAGCGCACACACACGGAGCG
CATCGTCGGCATAAGTCACTGATTTACATGGAGGATGACGCGATACATCA
TGTTCCGGTGCCCTCGCCCCTCGCAGATAGACGCGGTGGAGAGGACGGGC
GGCATGTACAAGTCGTCCCTCGACGTGGCGGCGGAGTCGTGGTGCTGCGC
GGTGTCCTAGGCCGCGTAGACCCGCGCCGCATCATGAACATTGAGTTGGC
CACGCCGCCTAGCACCTGACATGGAGCCTAGTCGGACCCCAACCGGTCTG
ATGCACAGCTCCTGCGTCTGTCCCCCTGGCATTGGA
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Coding sequence (CDS) from alignment at Contig_214:149144..151829-

>mRNA_17828 ID=mRNA_17828|Name=jgi.p|Trimin1|354175|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_214:149144..151829- (Tribonema minus UTEX_B_3156 )
ATGACTCACGGCGCTGCGGTGTACGTCGAGGGCGAGGAGGATGAGCCAGT
CAAGAACTACATGCAGATGGCGCAGGAATACCATGTCACGGCGCCATACA
GAGATCTGAAGGGAAGGGCCAAGGAGGCGCGGATGGTGTTCTTCCCATGC
GGGCACAAGTGCATGTGCGAGAAGTGCGTGATGCAGCACAAGTACAGCTG
TGCAGGAGCCACTGACGCCGGCGAGGACTCGTGGACCATGTGCCCCGTGT
GCGCGGAGCAGATCAAGTTCATGAGCCTGTTCATCGACGGCAAGACTGAG
GTTCAGCGGTACTGGCAGTGGATAGACGCGGTGGAGAGGACGGGCGGCAT
GTACAAGTCGTCCCTCGACGTGGCGGCGGAGTCGTGGTGCTGCGCGGTGT
CCTAG
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