Trimin1|354120|estExt_Genemark1.C_Ctg_2100010 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354120
Unique NameTrimin1|354120|estExt_Genemark1.C_Ctg_2100010
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length577
Homology
BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: A0A835Z2B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B8_9STRA)

HSP 1 Score: 904 bits (2336), Expect = 0.000e+0
Identity = 576/576 (100.00%), Postives = 576/576 (100.00%), Query Frame = 0
Query:    1 MAALEERLRRLRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDERLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVACGAXXXXXXGGAGGXXXXXXXXXXXXXXXXXXXXDGRGQRHGFVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAEDAAXXXXXXXXXXXXXXXXVGEGSAGADIAHAALQQ 576
            MAALEERLRRLRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDERLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVACGAXXXXXXGGAGGXXXXXXXXXXXXXXXXXXXXDGRGQRHGFVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAEDAAXXXXXXXXXXXXXXXXVGEGSAGADIAHAALQQ
Sbjct:    1 MAALEERLRRLRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDERLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVACGAXXXXXXGGAGGXXXXXXXXXXXXXXXXXXXXDGRGQRHGFVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAEDAAXXXXXXXXXXXXXXXXVGEGSAGADIAHAALQQ 576          
BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: D8LQ52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ52_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 4.930e-63
Identity = 183/557 (32.85%), Postives = 241/557 (43.27%), Query Frame = 0
Query:   11 LRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDE--RLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRG-APPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPS-----------------------IHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVACGAXXXXXXGGAGGXXXXXXXXXXXXXXXXXXXXDGRGQRHG-FVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAE 540
            L +RVTGA +V+R+ P+L       +  T+  +   S D+  R+DFV+ETTVTK  Q  HR A VLNRL G+ VLEDKA+  LL R M AP LES+ V G + V  WA+ R+                 E N              +  P  D           G+ ++      +   G     E DWWCVKAA GNGG D+WVLH GN + +   LS        +YV+QRYVARP+L     G K HFR + +LR D+SAWL+  A +L A  PY+L   GN S                       +H++NLA +K   G                               Q  CDLP E+ ALWP+ML   G+   AA P M+HQA+  HF   GLD +AD+ G                          GVWL+EANR+PGL S+++N  ++   Y  +  DL+ L VLP +                                    G     G F  AA    G    + + WRNV   AAF R CR +
Sbjct:   67 LTFRVTGASSVARLEPLLLGPGGRNQRPTIWSRSLDSGDDGVRVDFVWETTVTKQQQRRHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLESYAVNGRNAVARWAQQRF----------------KEQNLPRDRPPPPPSTREAGYPHDDQFLARKRALVQGTSAATETTQESEAVGNGHAGEEDWWCVKAAGGNGGLDIWVLHKGNWKMVTEALSEHE-----SYVIQRYVARPMLWQ---GRKFHFRAYALLRADMSAWLYRTAYILSASRPYSLG--GNDSRDDGVRVGAGVADMHRAAFADEFVHISNLAVNKHTEGHPG----------------------------QVPCDLPSEYGALWPKMLELLGSLVDAATPFMQHQANPNHFEFLGLDIIADSAG--------------------------GVWLMEANRLPGLQSSKQNLEKENEVYDGMMLDLIRLLVLPPLT-----------------------------------GCSPEQGLFEVAATPASGARAPSTETWRNVMRFAAFKRSCRTK 508          
BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: W7TQE7_9STRA (Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQE7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.130e-23
Identity = 132/490 (26.94%), Postives = 191/490 (38.98%), Query Frame = 0
Query:   13 YRVTGAGAVSRIRPVLDTDSVCREGCTVEW-----QEA---SSPDERLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALL-----SRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAG--NAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLR------------------GDLSAWLHAGACVLRARAPY------ALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVA 463
            YR+TGA A +RI P+L      +E   V W     Q A   + P   LDFV+ET V +  +  H  A VLNRL  +V+LE+KA F+ +     S+    P LE+ +V      +AW  AR   L                                                  ++ +        C        +WW +KAA  NGGGDV VL     +    +A           +YV+QRY+ RPLLL +    K H+R + +LR                       W++    +LRA   Y        ++  + + HLTNL+ +K   G                            +  Q   DL R  P  +  M A W A   AAAP +R QAS+ HF LFGLD+L                                ++L+E NR+PGL S+R+N A+++  Y  + R+LLDL V+P ++
Sbjct:   24 YRITGAAAQARIVPLL------QERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRAMD-AQAWLDARRRQLR-------------------------------------------------TVQNANYTVFTDCT---EDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPL------DSYVVQRYITRPLLLEK--KYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPG----------------------------YPGQLPIDLARA-PRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLP-------------VEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLS 404          
BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: A0A4D9DE03_9STRA (ADP,ATP carrier protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DE03_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.140e-12
Identity = 81/278 (29.14%), Postives = 113/278 (40.65%), Query Frame = 0
Query:  195 DWWCVKAARGNGGGDVWVLHAG--NAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLR-------GDLSA-----------WLHAGACVLRARAPY------ALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFY 446
            +WW +KAA  NGGGDV VL     +    +A           +YV+QRY+ RPLLL +    K H+R + +LR       G  S            WL+    +LRA   Y        ++  + + HLTNL+ +K   G                            +  Q   DL R  P  +  M A W A   AAAP +R QAS+ HF LFGLDFL                                ++L+E NR+PGL S+ +N A+++  Y
Sbjct:   34 EWWILKAAGANGGGDVHVLPPACTHVPACIALRPL------DSYVVQRYITRPLLLEK--KYKFHYRVYALLRMTGVEETGHTSVDGEARRARFQPWLYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPG----------------------------YPGQLPIDLARA-PRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDFLP-------------VEPARAPEDMMRLDEFDSMYLMEINRLPGLQSSPQNSADEDGLY 261          
BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: A0A7S0XB70_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XB70_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 6.080e-5
Identity = 37/100 (37.00%), Postives = 50/100 (50.00%), Query Frame = 0
Query:  197 WCVKAARGNGGGDVWVLHAGN-AQRLVA-QLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPS 294
            W +K +  N G ++  L AG+ A R  A Q+     G   A+VLQRYVA PLL+   G  K H R   +  GDL  ++H  A  L A  P   +  G P+
Sbjct:   17 WVLKGSESNRGEEIVFLDAGSPAHRAAAEQVMAAEAGSSAAWVLQRYVADPLLVR--GRFKFHLRVMVLAVGDLKVYVHDNAVALCAAEPLFDAGEGRPA 114          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354120 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z2B8_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LQ52_ECTSI4.930e-6332.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TQE7_9STRA8.130e-2326.94Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis ga... [more]
A0A4D9DE03_9STRA3.140e-1229.14ADP,ATP carrier protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0XB70_9CHLO6.080e-537.00Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.470.20coord: 231..401
e-value: 1.5E-16
score: 62.6
NoneNo IPR availableGENE3D3.30.470.20coord: 405..463
e-value: 2.9E-5
score: 25.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 485..503
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 477..503
NoneNo IPR availablePANTHERPTHR46570TUBULIN--TYROSINE LIGASEcoord: 193..302
NoneNo IPR availableSUPERFAMILY56059Glutathione synthetase ATP-binding domain-likecoord: 196..456
IPR004344Tubulin-tyrosine ligase/Tubulin polyglutamylasePFAMPF03133TTLcoord: 192..390
e-value: 4.4E-13
score: 49.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_210contigContig_210:65647..68739 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354120mRNA_15908Tribonema minus UTEX_B_3156 mRNAContig_210 65630..68739 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354120|estExt_Genemark1.C_Ctg_2100010 ID=Trimin1|354120|estExt_Genemark1.C_Ctg_2100010|Name=jgi.p|Trimin1|354120|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=577bp
MAALEERLRRLRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDE
RLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPA
LESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAAC
HRCGSREPVGDSSTDGAAACAAGSLSSGAAAARARCRGAPPREPDWWCVK
AARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPR
CGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPSIHLTNL
AFSKRPGGAAAAAAAVAPGADGAAPPDGSSSAAAQRFRPQTACDLPREHP
ALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSGLEF
LADAGGSLFGLDFLADAAGGVWLLEANRVPGLASTRENWAEDEAFYGALT
RDLLDLAVLPHVACGALPHVACGGAGGGEGEGEGEGEGGGGKEGEGEDGR
GQRHGFVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAEDAAAAAAAGA
ATAAAAAAAVGEGSAGADIAHAALQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004344TTL/TTLL_fam