mRNA_15908 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354120
Unique NamemRNA_15908
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: A0A835Z2B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B8_9STRA)

HSP 1 Score: 905 bits (2338), Expect = 0.000e+0
Identity = 576/576 (100.00%), Postives = 576/576 (100.00%), Query Frame = 1 
Query:    1 MAALEERLRRLRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDERLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVACGAXXXXXXGGAGGXXXXXXXXXXXXXXXXXXXXDGRGQRHGFVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAEDAAXXXXXXXXXXXXXXXXVGEGSAGADIAHAALQQ 1728
            MAALEERLRRLRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDERLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVACGAXXXXXXGGAGGXXXXXXXXXXXXXXXXXXXXDGRGQRHGFVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAEDAAXXXXXXXXXXXXXXXXVGEGSAGADIAHAALQQ
Sbjct:    1 MAALEERLRRLRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDERLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVACGAXXXXXXGGAGGXXXXXXXXXXXXXXXXXXXXDGRGQRHGFVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAEDAAXXXXXXXXXXXXXXXXVGEGSAGADIAHAALQQ 576
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BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: D8LQ52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ52_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 5.520e-63
Identity = 183/557 (32.85%), Postives = 241/557 (43.27%), Query Frame = 1 
Query:   31 LRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDE--RLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRG-APPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPS-----------------------IHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVACGAXXXXXXGGAGGXXXXXXXXXXXXXXXXXXXXDGRGQRHG-FVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAE 1620
            L +RVTGA +V+R+ P+L       +  T+  +   S D+  R+DFV+ETTVTK  Q  HR A VLNRL G+ VLEDKA+  LL R M AP LES+ V G + V  WA+ R+                 E N              +  P  D           G+ ++      +   G     E DWWCVKAA GNGG D+WVLH GN + +   LS        +YV+QRYVARP+L     G K HFR + +LR D+SAWL+  A +L A  PY+L   GN S                       +H++NLA +K   G                               Q  CDLP E+ ALWP+ML   G+   AA P M+HQA+  HF   GLD +AD+ G                          GVWL+EANR+PGL S+++N  ++   Y  +  DL+ L VLP +                                    G     G F  AA    G    + + WRNV   AAF R CR +
Sbjct:   67 LTFRVTGASSVARLEPLLLGPGGRNQRPTIWSRSLDSGDDGVRVDFVWETTVTKQQQRRHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLESYAVNGRNAVARWAQQRF----------------KEQNLPRDRPPPPPSTREAGYPHDDQFLARKRALVQGTSAATETTQESEAVGNGHAGEEDWWCVKAAGGNGGLDIWVLHKGNWKMVTEALSEHE-----SYVIQRYVARPMLWQ---GRKFHFRAYALLRADMSAWLYRTAYILSASRPYSLG--GNDSRDDGVRVGAGVADMHRAAFADEFVHISNLAVNKHTEGHPG----------------------------QVPCDLPSEYGALWPKMLELLGSLVDAATPFMQHQANPNHFEFLGLDIIADSAG--------------------------GVWLMEANRLPGLQSSKQNLEKENEVYDGMMLDLIRLLVLPPLT-----------------------------------GCSPEQGLFEVAATPASGARAPSTETWRNVMRFAAFKRSCRTK 508
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BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: W7TQE7_9STRA (Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQE7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.380e-23
Identity = 132/490 (26.94%), Postives = 191/490 (38.98%), Query Frame = 1 
Query:   37 YRVTGAGAVSRIRPVLDTDSVCREGCTVEW-----QEA---SSPDERLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALL-----SRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAG--NAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLR------------------GDLSAWLHAGACVLRARAPY------ALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFYGALTRDLLDLAVLPHVA 1389
            YR+TGA A +RI P+L      +E   V W     Q A   + P   LDFV+ET V +  +  H  A VLNRL  +V+LE+KA F+ +     S+    P LE+ +V      +AW  AR   L                                                  ++ +        C        +WW +KAA  NGGGDV VL     +    +A           +YV+QRY+ RPLLL +    K H+R + +LR                       W++    +LRA   Y        ++  + + HLTNL+ +K   G                            +  Q   DL R  P  +  M A W A   AAAP +R QAS+ HF LFGLD+L                                ++L+E NR+PGL S+R+N A+++  Y  + R+LLDL V+P ++
Sbjct:   24 YRITGAAAQARIVPLL------QERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRAMD-AQAWLDARRRQLR-------------------------------------------------TVQNANYTVFTDCT---EDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPL------DSYVVQRYITRPLLLEK--KYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPG----------------------------YPGQLPIDLARA-PRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLP-------------VEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLS 404
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BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: A0A4D9DE03_9STRA (ADP,ATP carrier protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DE03_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.200e-12
Identity = 81/278 (29.14%), Postives = 113/278 (40.65%), Query Frame = 1 
Query:  583 DWWCVKAARGNGGGDVWVLHAG--NAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLR-------GDLSA-----------WLHAGACVLRARAPY------ALSDAGNPSIHLTNLAFSKRPGGXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRPQTACDLPREHPALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSXXXXXXXXXXXXXXXXXXXXXXXGVWLLEANRVPGLASTRENWAEDEAFY 1338
            +WW +KAA  NGGGDV VL     +    +A           +YV+QRY+ RPLLL +    K H+R + +LR       G  S            WL+    +LRA   Y        ++  + + HLTNL+ +K   G                            +  Q   DL R  P  +  M A W A   AAAP +R QAS+ HF LFGLDFL                                ++L+E NR+PGL S+ +N A+++  Y
Sbjct:   34 EWWILKAAGANGGGDVHVLPPACTHVPACIALRPL------DSYVVQRYITRPLLLEK--KYKFHYRVYALLRMTGVEETGHTSVDGEARRARFQPWLYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPG----------------------------YPGQLPIDLARA-PRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDFLP-------------VEPARAPEDMMRLDEFDSMYLMEINRLPGLQSSPQNSADEDGLY 261
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BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: A0A7S0XB70_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XB70_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 6.140e-5
Identity = 37/100 (37.00%), Postives = 50/100 (50.00%), Query Frame = 1 
Query:  589 WCVKAARGNGGGDVWVLHAGN-AQRLVA-QLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPS 882
            W +K +  N G ++  L AG+ A R  A Q+     G   A+VLQRYVA PLL+   G  K H R   +  GDL  ++H  A  L A  P   +  G P+
Sbjct:   17 WVLKGSESNRGEEIVFLDAGSPAHRAAAEQVMAAEAGSSAAWVLQRYVADPLLVR--GRFKFHLRVMVLAVGDLKVYVHDNAVALCAAEPLFDAGEGRPA 114
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BLAST of jgi.p|Trimin1|354120 vs. uniprot
Match: A0A835Z5X9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5X9_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.300e-51
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 MQVSSLTRRLLDLGFSRHMQALGSVGGSCLLLLAIFAGLLAWTYVLPSMAEPGRAAHGILTRRALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAQPAGACGSAHWSGLAGGARRYLCP 384
            MQVSSLTRRLLDLGFSRHMQALGSVGGSCLLLLAIFAGLLAWTYVLPSMAEPGRAAHGILTRRALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAQPAGACGSAHWSGLAGGARRYLCP
Sbjct:    1 MQVSSLTRRLLDLGFSRHMQALGSVGGSCLLLLAIFAGLLAWTYVLPSMAEPGRAAHGILTRRALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAQPAGACGSAHWSGLAGGARRYLCP 128
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354120 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z2B8_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LQ52_ECTSI5.520e-6332.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TQE7_9STRA8.380e-2326.94Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis ga... [more]
A0A4D9DE03_9STRA3.200e-1229.14ADP,ATP carrier protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0XB70_9CHLO6.140e-537.00Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
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BLAST of jgi.p|Trimin1|354120 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z5X9_9STRA3.300e-51100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_210contigContig_210:65630..68739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354120|estExt_Genemark1.C_Ctg_2100010
BRITEko00000,ko01000,ko04812
KEGG koko:K16608
Preferred nameTtll2
Descriptionprotein polyglycylation
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Evalue8.08e-64
Seed ortholog2880.D8LQ52
Hectar predicted targeting categoryother localisation
TranscriptId354442
TrackFilteredModels1
ProteinId354120
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354120gene_15908Tribonema minus UTEX_B_3156 geneContig_210 65630..68739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354120Trimin1|354120|estExt_Genemark1.C_Ctg_2100010Tribonema minus UTEX_B_3156 polypeptideContig_210 65647..68739 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15908_6exon_15908_6Tribonema minus UTEX_B_3156 exonContig_210 65630..66156 -
exon_15908_5exon_15908_5Tribonema minus UTEX_B_3156 exonContig_210 66237..66277 -
exon_15908_4exon_15908_4Tribonema minus UTEX_B_3156 exonContig_210 66354..66392 -
exon_15908_3exon_15908_3Tribonema minus UTEX_B_3156 exonContig_210 66858..67740 -
exon_15908_2exon_15908_2Tribonema minus UTEX_B_3156 exonContig_210 68357..68467 -
exon_15908_1exon_15908_1Tribonema minus UTEX_B_3156 exonContig_210 68593..68739 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15908UTR3_15908Tribonema minus UTEX_B_3156 three_prime_UTRContig_210 65630..65646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15908CDS_15908Tribonema minus UTEX_B_3156 CDSContig_210 68593..68739 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15908 ID=mRNA_15908|Name=jgi.p|Trimin1|354120|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1748bp|location=Sequence derived from alignment at Contig_210:65630..68739- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCACTAGAGGAAAGACTGAGGCGCTTGAGATATCGCGTGACTGG
TGCGGGTGCTGTCAGCAGAATCCGGCCTGTACTGGATACTGACAGCGTCT
GCCGGGAGGGCTGCACTGTAGAGTGGCAGGAGGCCTCATCGCCAGACGAA
AGATTGGATTTCGTTTATGAGACCACCGTCACGAAGGATTGGCAGGCTGC
TCACAGGGGAGCTGTGGTGCTGAATAGGCTGTGCGGAAGTGTGGTCCTGG
AGGACAAGGCGAGCTTCGCGCTGCTGTCGCGCCGCATGGCCGCGCCGGCG
CTGGAGTCGCATCTTGTGGAGGGCAGCAGCGGCGTGGAGGCGTGGGCAAA
GGCGCGATGGGGCCCACTTTTCAACAGCAGCAGCAGCGGCGACGAAGGCG
GCAGCGGCGCTGAAGGAAACGACAGCAGCAGCAGCGGCGCAGCGGCGTGC
CATCGCTGCGGCAGCCGTGAACCTGTCGGCGACAGCAGCACCGACGGCGC
AGCGGCGTGTGCTGCCGGCAGCCTCAGCAGCGGCGCCGCCGCCGCAAGAG
CGCGCTGCCGCGGCGCGCCTCCGCGCGAGCCGGACTGGTGGTGCGTCAAG
GCGGCGCGCGGCAACGGCGGCGGCGACGTGTGGGTGCTGCACGCCGGCAA
TGCGCAGCGCCTCGTCGCGCAGCTCTCGCGCTGCGGCGGCGGCGGCGGCG
GCGCGTACGTGCTGCAGCGCTACGTCGCGCGGCCGCTGCTGCTGCCGCGC
TGCGGCGGCGCCAAGTCGCACTTCCGCTGCTTCGGCGTGCTGCGCGGCGA
CCTGAGCGCGTGGCTGCACGCGGGGGCGTGCGTCCTGCGCGCGCGCGCCC
CCTACGCATTAAGCGACGCCGGCAATCCTTCCATACACCTCACGAACCTG
GCGTTCAGCAAGCGGCCGGGCGGCGCGGCGGCGGCGGCGGCGGCGGTGGC
GCCAGGGGCGGACGGCGCGGCGCCGCCTGACGGCAGCAGCAGCGCTGCCG
CGCAGCGCTTCCGGCCGCAGACGGCGTGTGACCTGCCGCGCGAGCACCCC
GCGCTGTGGCCGCGCATGCTGGCGGCGTGGGGCGCGGCGGCGGCGGCGGC
GGCGCCGCTGATGCGCCACCAGGCGAGCGCGGCGCACTTCGCGCTCTTCG
GCCTTGACTTCCTGGCAGACGCCGGCGGCGAGCTCTCCGGCCTCGAGTTC
CTGGCGGACGCCGGCGGCAGCCTCTTTGGGCTCGATTTCCTGGCGGACGC
CGCCGGCGGCGTCTGGCTGCTGGAGGCGAACCGCGTCCCTGGGCTCGCCA
GCACTCGCGAGAACTGGGCGGAGGACGAGGCCTTCTACGGAGCGCTGACG
CGGGACCTCCTGGACCTCGCGGTGCTGCCACATGTCGCATGCGGAGCGTT
GCCACATGTCGCATGCGGAGGGGCGGGGGGAGGGGAGGGGGAGGGGGAGG
GGGAGGGAGAGGGGGGGGGGGGAAAGGAGGGGGAGGGGGAGGATGGTCGG
GGGCAGAGGCACGGGTTCGTGCGCGCGGCGCCCGTGTATGAGGGCGTGGT
GTACGACGCGGCGCAGGTCTGGCGGAACGTGTTCAACCTGGCGGCGTTCG
CGCGGCGGTGCAGGGCGGAGGACGCGGCGGCAGCAGCGGCGGCGGGGGCG
GCGACTGCGGCGGCGGCTGCTGCTGCCGTGGGCGAAGGCAGCGCGGGCGC
GGACATCGCGCATGCCGCATTGCAACAATAGTAACAGCCGCTCTCGTA
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protein sequence of jgi.p|Trimin1|354120

>Trimin1|354120|estExt_Genemark1.C_Ctg_2100010 ID=Trimin1|354120|estExt_Genemark1.C_Ctg_2100010|Name=jgi.p|Trimin1|354120|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=577bp
MAALEERLRRLRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDE
RLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPA
LESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAAC
HRCGSREPVGDSSTDGAAACAAGSLSSGAAAARARCRGAPPREPDWWCVK
AARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPR
CGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDAGNPSIHLTNL
AFSKRPGGAAAAAAAVAPGADGAAPPDGSSSAAAQRFRPQTACDLPREHP
ALWPRMLAAWGAAAAAAAPLMRHQASAAHFALFGLDFLADAGGELSGLEF
LADAGGSLFGLDFLADAAGGVWLLEANRVPGLASTRENWAEDEAFYGALT
RDLLDLAVLPHVACGALPHVACGGAGGGEGEGEGEGEGGGGKEGEGEDGR
GQRHGFVRAAPVYEGVVYDAAQVWRNVFNLAAFARRCRAEDAAAAAAAGA
ATAAAAAAAVGEGSAGADIAHAALQQ*
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mRNA from alignment at Contig_210:65630..68739-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15908 ID=mRNA_15908|Name=jgi.p|Trimin1|354120|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3110bp|location=Sequence derived from alignment at Contig_210:65630..68739- (Tribonema minus UTEX_B_3156 )
ATGGCAGCACTAGAGGAAAGACTGAGGCGCTTGAGATATCGCGTGACTGG
TGCGGGTGCTGTCAGCAGAATCCGGCCTGTACTGGATACTGACAGCGTCT
GCCGGGAGGGCTGCACTGTAGAGTGGCAGGAGGCCTCATCGCCAGACGTG
AGCACAACACCCGCATTACTCGCTTAGTAGTGGCGTATTACGACACTCTT
TATAACATGCTCATCTGCTGCAGTTTGTTGTCTCATGGCAGCTTCGCGCA
TCGCCCTTACTCTGCTCTGCAGGAAAGATTGGATTTCGTTTATGAGACCA
CCGTCACGAAGGATTGGCAGGCTGCTCACAGGGGAGCTGTGGTGCTGAAT
AGGCTGTGCGGAAGTGTGGTCCTGGAGGACAAGGTAACTCATATGGCGCC
AGGCATAGCAACAGTGCAGTACAATTTCCCACACTCTGCAGCGTGCGATC
CACTGCTTCGCATCTTGAAGTCTAGGTCCATAGTGGGGAGATGCCATTGG
CGATGCTGCTGAGAAGTGATCGACAGTGCGCATTGAGACATTTTTTCAGG
CGTCCACAAGACACATGTAGATTCTGATTGCAAGCTGAGCATCCACCATC
TGTTTTTTTTTTTTTTTTTTTTTCGCGCCCTAAGCGAGAACTACAAGGTT
GCGAGCTCGTGCTGGTAAAGTTGAAACACTGCTGCTGTGAGAGGTGGTCT
GCTGTTGCTGGCGCTTTCGAAGAAGCGGCACGCCCCGTTGTGCTGTCACC
CACTGACGCTGGCCTGGCACCGTGTACAACTGCAACTGGCTTGGTGTGAG
CGATTCTGACGCAAGCTCAGCTGCGATGTCCGGACGCGTGTAGATGCGCA
ATGCGTGCACTGCGGGGAAATGTCTGCAAGTGCACCACACGCTGCATTGC
GTGCTCCTATTCAAATGCTTCCTGGCTTCCTGATGCAAGCCGCGCATGTG
CATCCCATCGCTCCACCACTCATCACGCAACCTTCAAACTGCGCCGCAGG
CGAGCTTCGCGCTGCTGTCGCGCCGCATGGCCGCGCCGGCGCTGGAGTCG
CATCTTGTGGAGGGCAGCAGCGGCGTGGAGGCGTGGGCAAAGGCGCGATG
GGGCCCACTTTTCAACAGCAGCAGCAGCGGCGACGAAGGCGGCAGCGGCG
CTGAAGGAAACGACAGCAGCAGCAGCGGCGCAGCGGCGTGCCATCGCTGC
GGCAGCCGTGAACCTGTCGGCGACAGCAGCACCGACGGCGCAGCGGCGTG
TGCTGCCGGCAGCCTCAGCAGCGGCGCCGCCGCCGCAAGAGCGCGCTGCC
GCGGCGCGCCTCCGCGCGAGCCGGACTGGTGGTGCGTCAAGGCGGCGCGC
GGCAACGGCGGCGGCGACGTGTGGGTGCTGCACGCCGGCAATGCGCAGCG
CCTCGTCGCGCAGCTCTCGCGCTGCGGCGGCGGCGGCGGCGGCGCGTACG
TGCTGCAGCGCTACGTCGCGCGGCCGCTGCTGCTGCCGCGCTGCGGCGGC
GCCAAGTCGCACTTCCGCTGCTTCGGCGTGCTGCGCGGCGACCTGAGCGC
GTGGCTGCACGCGGGGGCGTGCGTCCTGCGCGCGCGCGCCCCCTACGCAT
TAAGCGACGCCGGCAATCCTTCCATACACCTCACGAACCTGGCGTTCAGC
AAGCGGCCGGGCGGCGCGGCGGCGGCGGCGGCGGCGGTGGCGCCAGGGGC
GGACGGCGCGGCGCCGCCTGACGGCAGCAGCAGCGCTGCCGCGCAGCGCT
TCCGGCCGCAGACGGCGTGTGACCTGCCGCGCGAGCACCCCGCGCTGTGG
CCGCGCATGCTGGCGGCGTGGGGCGCGGCGGCGGCGGCGGCGGCGCCGCT
GATGCGCCACCAGGCGAGCGCGGCGCACTTCGGTGAGCCGTCCGCCGTTG
GTAAAGAAGTCTTTGTGAGGTTTTTCCCGTGTCGAATGTGCCAGCAGAAT
GGTTATGATGAAAGGGTGTGCTGGGCTGCCGCTCGCTGAATGCACGCCAT
GCCACGGACCAAAGTGATACCGGCGGCACGCAGTTGGCGTCGTGAATGGC
CAGCTGCAGAGCGTACTCGCAGCAGACCCTCAAGCGCCGTGTCGGCAACA
GCTCTGCGCGCGCCGCGCCCACTGACCAGCCCGCCCACTGCTATTCAACC
CGACCACTTCATGTACATGTACCCCTGACCAGCACGCCCAGCCCACCGTA
CCTTACCACTATACCCACAACACTGACATAACCTGCACCCAGCAGGGCCT
GCTGACCAGCATGCTTACGGTACCGTAATCACACCAGTATACCAACATAC
CTGACCCCAGCATACATACTTCTCCGTACGTACCGCGCGCGTCGCAGCGC
TCTTCGGCCTTGACTTCCTGGCAGACGCCGGCGGCGGTGGCGTCTACAAT
AATATGAGCATACAGTATACCTACATACCTGACCCCAGTTATACATACCC
CGCGTGTCGCAGAGCTCTCCGGCCTCGAGTTCCTGGCGGACGCCGGCGGC
AGCGTCCACAATAATGTATACGTATATACCATACCAGTTTACCTACATAC
CTGACCAGTATACATACCCCATGCGTCGCAGAGCTCTTTGGGCTCGATTT
CCTGGCGGACGCCGCCGGCGGCGTCTGGCTGCTGGAGGCGAACCGCGTCC
CTGGGCTCGCCAGCACTCGCGAGAACTGGGCGGAGGACGAGGCCTTCTAC
GGAGCGCTGACGCGGGACCTCCTGGACCTCGCGGTGCTGCCACATGTCGC
ATGCGGAGCGTTGCCACATGTCGCATGCGGAGGGGCGGGGGGAGGGGAGG
GGGAGGGGGAGGGGGAGGGAGAGGGGGGGGGGGGAAAGGAGGGGGAGGGG
GAGGATGGTCGGGGGCAGAGGCACGGGTTCGTGCGCGCGGCGCCCGTGTA
TGAGGGCGTGGTGTACGACGCGGCGCAGGTCTGGCGGAACGTGTTCAACC
TGGCGGCGTTCGCGCGGCGGTGCAGGGCGGAGGACGCGGCGGCAGCAGCG
GCGGCGGGGGCGGCGACTGCGGCGGCGGCTGCTGCTGCCGTGGGCGAAGG
CAGCGCGGGCGCGGACATCGCGCATGCCGCATTGCAACAATAGTAACAGC
CGCTCTCGTA
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Coding sequence (CDS) from alignment at Contig_210:65630..68739-

>mRNA_15908 ID=mRNA_15908|Name=jgi.p|Trimin1|354120|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1731bp|location=Sequence derived from alignment at Contig_210:65630..68739- (Tribonema minus UTEX_B_3156 )
ATGGCAGCACTAGAGGAAAGACTGAGGCGCTTGAGATATCGCGTGACTGG
TGCGGGTGCTGTCAGCAGAATCCGGCCTGTACTGGATACTGACAGCGTCT
GCCGGGAGGGCTGCACTGTAGAGTGGCAGGAGGCCTCATCGCCAGACGAA
AGATTGGATTTCGTTTATGAGACCACCGTCACGAAGGATTGGCAGGCTGC
TCACAGGGGAGCTGTGGTGCTGAATAGGCTGTGCGGAAGTGTGGTCCTGG
AGGACAAGGCGAGCTTCGCGCTGCTGTCGCGCCGCATGGCCGCGCCGGCG
CTGGAGTCGCATCTTGTGGAGGGCAGCAGCGGCGTGGAGGCGTGGGCAAA
GGCGCGATGGGGCCCACTTTTCAACAGCAGCAGCAGCGGCGACGAAGGCG
GCAGCGGCGCTGAAGGAAACGACAGCAGCAGCAGCGGCGCAGCGGCGTGC
CATCGCTGCGGCAGCCGTGAACCTGTCGGCGACAGCAGCACCGACGGCGC
AGCGGCGTGTGCTGCCGGCAGCCTCAGCAGCGGCGCCGCCGCCGCAAGAG
CGCGCTGCCGCGGCGCGCCTCCGCGCGAGCCGGACTGGTGGTGCGTCAAG
GCGGCGCGCGGCAACGGCGGCGGCGACGTGTGGGTGCTGCACGCCGGCAA
TGCGCAGCGCCTCGTCGCGCAGCTCTCGCGCTGCGGCGGCGGCGGCGGCG
GCGCGTACGTGCTGCAGCGCTACGTCGCGCGGCCGCTGCTGCTGCCGCGC
TGCGGCGGCGCCAAGTCGCACTTCCGCTGCTTCGGCGTGCTGCGCGGCGA
CCTGAGCGCGTGGCTGCACGCGGGGGCGTGCGTCCTGCGCGCGCGCGCCC
CCTACGCATTAAGCGACGCCGGCAATCCTTCCATACACCTCACGAACCTG
GCGTTCAGCAAGCGGCCGGGCGGCGCGGCGGCGGCGGCGGCGGCGGTGGC
GCCAGGGGCGGACGGCGCGGCGCCGCCTGACGGCAGCAGCAGCGCTGCCG
CGCAGCGCTTCCGGCCGCAGACGGCGTGTGACCTGCCGCGCGAGCACCCC
GCGCTGTGGCCGCGCATGCTGGCGGCGTGGGGCGCGGCGGCGGCGGCGGC
GGCGCCGCTGATGCGCCACCAGGCGAGCGCGGCGCACTTCGCGCTCTTCG
GCCTTGACTTCCTGGCAGACGCCGGCGGCGAGCTCTCCGGCCTCGAGTTC
CTGGCGGACGCCGGCGGCAGCCTCTTTGGGCTCGATTTCCTGGCGGACGC
CGCCGGCGGCGTCTGGCTGCTGGAGGCGAACCGCGTCCCTGGGCTCGCCA
GCACTCGCGAGAACTGGGCGGAGGACGAGGCCTTCTACGGAGCGCTGACG
CGGGACCTCCTGGACCTCGCGGTGCTGCCACATGTCGCATGCGGAGCGTT
GCCACATGTCGCATGCGGAGGGGCGGGGGGAGGGGAGGGGGAGGGGGAGG
GGGAGGGAGAGGGGGGGGGGGGAAAGGAGGGGGAGGGGGAGGATGGTCGG
GGGCAGAGGCACGGGTTCGTGCGCGCGGCGCCCGTGTATGAGGGCGTGGT
GTACGACGCGGCGCAGGTCTGGCGGAACGTGTTCAACCTGGCGGCGTTCG
CGCGGCGGTGCAGGGCGGAGGACGCGGCGGCAGCAGCGGCGGCGGGGGCG
GCGACTGCGGCGGCGGCTGCTGCTGCCGTGGGCGAAGGCAGCGCGGGCGC
GGACATCGCGCATGCCGCATTGCAACAATAG
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