Trimin1|354004|estExt_Genemark1.C_Ctg_2020035 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354004
Unique NameTrimin1|354004|estExt_Genemark1.C_Ctg_2020035
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length538
Homology
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BLAST of jgi.p|Trimin1|354004 vs. uniprot
Match: A0A836CJP9_9STRA (CAP-Gly domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP9_9STRA)

HSP 1 Score: 744 bits (1921), Expect = 6.190e-266
Identity = 537/537 (100.00%), Postives = 537/537 (100.00%), Query Frame = 0 
Query:    1 MLGNLSPKRGISAEDVLLGSVVITKKNKRGLVKYRGTPAGKKGVWLGLELDEVGIHSGAVGGVTYYECREGSGVFVNEVLKVVRGPPAAPTSSKVASPPSAAARRGSVERVRHVSSPQGSRNGGAGVTSAAGGKQMLSKRGSMSSQRSMRGSAMADGRRRTSVTDSERGAPAHYQQPLRRTSVSSVTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQPQEHQRHASGSGGSGGERVQGVLETNKALIKRMGAACDGSDGDGDSEASAAADAPAEHRRAPXXXXXXXXXXXXXXRAXXXXXXXXXXXXXXSSVLDALNAGDAEANKWVLDTAARALAEDPECSLSVAVRTIARETAAEAVQVGVGHAVKSRVEEYLSRGAELHKGHVAALEGRVSEGLAAVAQRLADVERLVEQQXXXXXXXXXXXXXXXXXXXXGEVEALKQLLRHAYALAMESEALMAKEREEHAAAVDGLIQQLRGDDLKFGAALPPAHPTSAAGS 537
            MLGNLSPKRGISAEDVLLGSVVITKKNKRGLVKYRGTPAGKKGVWLGLELDEVGIHSGAVGGVTYYECREGSGVFVNEVLKVVRGPPAAPTSSKVASPPSAAARRGSVERVRHVSSPQGSRNGGAGVTSAAGGKQMLSKRGSMSSQRSMRGSAMADGRRRTSVTDSERGAPAHYQQPLRRTSVSSVTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQPQEHQRHASGSGGSGGERVQGVLETNKALIKRMGAACDGSDGDGDSEASAAADAPAEHRRAPXXXXXXXXXXXXXXRAXXXXXXXXXXXXXXSSVLDALNAGDAEANKWVLDTAARALAEDPECSLSVAVRTIARETAAEAVQVGVGHAVKSRVEEYLSRGAELHKGHVAALEGRVSEGLAAVAQRLADVERLVEQQXXXXXXXXXXXXXXXXXXXXGEVEALKQLLRHAYALAMESEALMAKEREEHAAAVDGLIQQLRGDDLKFGAALPPAHPTSAAGS
Sbjct:    1 MLGNLSPKRGISAEDVLLGSVVITKKNKRGLVKYRGTPAGKKGVWLGLELDEVGIHSGAVGGVTYYECREGSGVFVNEVLKVVRGPPAAPTSSKVASPPSAAARRGSVERVRHVSSPQGSRNGGAGVTSAAGGKQMLSKRGSMSSQRSMRGSAMADGRRRTSVTDSERGAPAHYQQPLRRTSVSSVTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQPQEHQRHASGSGGSGGERVQGVLETNKALIKRMGAACDGSDGDGDSEASAAADAPAEHRRAPXXXXXXXXXXXXXXRAXXXXXXXXXXXXXXSSVLDALNAGDAEANKWVLDTAARALAEDPECSLSVAVRTIARETAAEAVQVGVGHAVKSRVEEYLSRGAELHKGHVAALEGRVSEGLAAVAQRLADVERLVEQQXXXXXXXXXXXXXXXXXXXXGEVEALKQLLRHAYALAMESEALMAKEREEHAAAVDGLIQQLRGDDLKFGAALPPAHPTSAAGS 537
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354004 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJP9_9STRA6.190e-266100.00CAP-Gly domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 436..456
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 450..473
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..342
NoneNo IPR availablePANTHERPTHR18916:SF6DYNACTIN SUBUNIT 1coord: 8..506
NoneNo IPR availablePANTHERPTHR18916DYNACTIN 1-RELATED MICROTUBULE-BINDINGcoord: 8..506
IPR000938CAP Gly-rich domainSMARTSM01052CAP_GLY_2coord: 18..81
e-value: 1.6E-11
score: 54.3
IPR000938CAP Gly-rich domainPFAMPF01302CAP_GLYcoord: 19..77
e-value: 2.2E-14
score: 53.1
IPR000938CAP Gly-rich domainPROSITEPS50245CAP_GLY_2coord: 36..77
score: 11.459182
IPR036859CAP Gly-rich domain superfamilyGENE3D2.30.30.190coord: 7..86
e-value: 3.2E-15
score: 57.5
IPR036859CAP Gly-rich domain superfamilySUPERFAMILY74924Cap-Gly domaincoord: 13..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_202contigContig_202:209559..211324 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354004mRNA_15451Tribonema minus UTEX_B_3156 mRNAContig_202 209418..211324 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354004|estExt_Genemark1.C_Ctg_2020035 ID=Trimin1|354004|estExt_Genemark1.C_Ctg_2020035|Name=jgi.p|Trimin1|354004|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=538bp
MLGNLSPKRGISAEDVLLGSVVITKKNKRGLVKYRGTPAGKKGVWLGLEL
DEVGIHSGAVGGVTYYECREGSGVFVNEVLKVVRGPPAAPTSSKVASPPS
AAARRGSVERVRHVSSPQGSRNGGAGVTSAAGGKQMLSKRGSMSSQRSMR
GSAMADGRRRTSVTDSERGAPAHYQQPLRRTSVSSVTSSRVAAAAAAHAA
TPGSPVGSSSARQRSGDSSSRAASQTNSHLRHGNMRPPPPPTQEQQRVAA
AAVRRQPQEHQRHASGSGGSGGERVQGVLETNKALIKRMGAACDGSDGDG
DSEASAAADAPAEHRRAPPPPAAAAAPGGDAARASGAAAATAGGGRRRSS
VLDALNAGDAEANKWVLDTAARALAEDPECSLSVAVRTIARETAAEAVQV
GVGHAVKSRVEEYLSRGAELHKGHVAALEGRVSEGLAAVAQRLADVERLV
EQQQQQRSEGGGGGGAGRSAEAEGEVEALKQLLRHAYALAMESEALMAKE
REEHAAAVDGLIQQLRGDDLKFGAALPPAHPTSAAGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000938CAP-Gly_domain
IPR036859CAP-Gly_dom_sf