mRNA_15451 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354004
Unique NamemRNA_15451
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354004 vs. uniprot
Match: A0A836CJP9_9STRA (CAP-Gly domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP9_9STRA)

HSP 1 Score: 744 bits (1921), Expect = 3.720e-265
Identity = 537/537 (100.00%), Postives = 537/537 (100.00%), Query Frame = 1 
Query:    1 MLGNLSPKRGISAEDVLLGSVVITKKNKRGLVKYRGTPAGKKGVWLGLELDEVGIHSGAVGGVTYYECREGSGVFVNEVLKVVRGPPAAPTSSKVASPPSAAARRGSVERVRHVSSPQGSRNGGAGVTSAAGGKQMLSKRGSMSSQRSMRGSAMADGRRRTSVTDSERGAPAHYQQPLRRTSVSSVTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQPQEHQRHASGSGGSGGERVQGVLETNKALIKRMGAACDGSDGDGDSEASAAADAPAEHRRAPXXXXXXXXXXXXXXRAXXXXXXXXXXXXXXSSVLDALNAGDAEANKWVLDTAARALAEDPECSLSVAVRTIARETAAEAVQVGVGHAVKSRVEEYLSRGAELHKGHVAALEGRVSEGLAAVAQRLADVERLVEQQXXXXXXXXXXXXXXXXXXXXGEVEALKQLLRHAYALAMESEALMAKEREEHAAAVDGLIQQLRGDDLKFGAALPPAHPTSAAGS 1611
            MLGNLSPKRGISAEDVLLGSVVITKKNKRGLVKYRGTPAGKKGVWLGLELDEVGIHSGAVGGVTYYECREGSGVFVNEVLKVVRGPPAAPTSSKVASPPSAAARRGSVERVRHVSSPQGSRNGGAGVTSAAGGKQMLSKRGSMSSQRSMRGSAMADGRRRTSVTDSERGAPAHYQQPLRRTSVSSVTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQPQEHQRHASGSGGSGGERVQGVLETNKALIKRMGAACDGSDGDGDSEASAAADAPAEHRRAPXXXXXXXXXXXXXXRAXXXXXXXXXXXXXXSSVLDALNAGDAEANKWVLDTAARALAEDPECSLSVAVRTIARETAAEAVQVGVGHAVKSRVEEYLSRGAELHKGHVAALEGRVSEGLAAVAQRLADVERLVEQQXXXXXXXXXXXXXXXXXXXXGEVEALKQLLRHAYALAMESEALMAKEREEHAAAVDGLIQQLRGDDLKFGAALPPAHPTSAAGS
Sbjct:    1 MLGNLSPKRGISAEDVLLGSVVITKKNKRGLVKYRGTPAGKKGVWLGLELDEVGIHSGAVGGVTYYECREGSGVFVNEVLKVVRGPPAAPTSSKVASPPSAAARRGSVERVRHVSSPQGSRNGGAGVTSAAGGKQMLSKRGSMSSQRSMRGSAMADGRRRTSVTDSERGAPAHYQQPLRRTSVSSVTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQPQEHQRHASGSGGSGGERVQGVLETNKALIKRMGAACDGSDGDGDSEASAAADAPAEHRRAPXXXXXXXXXXXXXXRAXXXXXXXXXXXXXXSSVLDALNAGDAEANKWVLDTAARALAEDPECSLSVAVRTIARETAAEAVQVGVGHAVKSRVEEYLSRGAELHKGHVAALEGRVSEGLAAVAQRLADVERLVEQQXXXXXXXXXXXXXXXXXXXXGEVEALKQLLRHAYALAMESEALMAKEREEHAAAVDGLIQQLRGDDLKFGAALPPAHPTSAAGS 537
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354004 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJP9_9STRA3.720e-265100.00CAP-Gly domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_202contigContig_202:209418..211324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354004|estExt_Genemark1.C_Ctg_2020035
BRITEko00000,ko00001,ko03036,ko04131,ko04812
KEGG Pathwayko04962,ko05016,map04962,map05016
KEGG koko:K04648
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464
DescriptionDynein associated protein
COG categoryDZ
Max annot lvl4751|Fungi
EggNOG OGsCOG5244@1|root,KOG0971@2759|Eukaryota,38CZ9@33154|Opisthokonta,3NWE7@4751|Fungi,3QMMK@4890|Ascomycota,20F4C@147545|Eurotiomycetes,3MQM4@451870|Chaetothyriomycetidae
Evalue1.4e-07
Seed ortholog293227.XP_008719811.1
Hectar predicted targeting categoryother localisation
TranscriptId354326
TrackFilteredModels1
ProteinId354004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354004gene_15451Tribonema minus UTEX_B_3156 geneContig_202 209418..211324 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15451_2exon_15451_2Tribonema minus UTEX_B_3156 exonContig_202 209418..211033 -
exon_15451_1exon_15451_1Tribonema minus UTEX_B_3156 exonContig_202 211186..211324 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15451UTR3_15451Tribonema minus UTEX_B_3156 three_prime_UTRContig_202 209418..209558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15451CDS_15451Tribonema minus UTEX_B_3156 CDSContig_202 211186..211324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354004Trimin1|354004|estExt_Genemark1.C_Ctg_2020035Tribonema minus UTEX_B_3156 polypeptideContig_202 209559..211324 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15451 ID=mRNA_15451|Name=jgi.p|Trimin1|354004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1755bp|location=Sequence derived from alignment at Contig_202:209418..211324- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGCAATCTGTCGCCCAAGCGTGGCATTAGCGCCGAGGACGTCCT
TCTGGGCAGCGTGGTGATCACCAAGAAAAACAAAAGGGGTCTCGTCAAGT
ATAGGGGCACGCCGGCAGGCAAAAAGGGAGTGTGGCTAGGCCTGGAGCTG
GATGAGGTAGGCATACACAGCGGCGCTGTGGGCGGCGTCACGTACTATGA
ATGTCGCGAGGGCTCAGGGGTATTTGTCAACGAGGTGCTCAAGGTCGTCA
GGGGGCCGCCGGCTGCTCCAACCAGCAGCAAGGTGGCATCTCCGCCTAGT
GCAGCGGCGCGCCGTGGCTCTGTCGAGCGCGTCCGCCATGTGAGCAGCCC
CCAGGGCTCGCGCAACGGCGGCGCCGGCGTCACCTCCGCCGCGGGCGGCA
AGCAGATGCTCTCCAAGCGCGGCAGCATGTCGTCGCAGCGCAGCATGAGG
GGCAGCGCGATGGCCGACGGGCGCCGCCGCACCAGCGTAACAGACTCCGA
GAGGGGCGCGCCTGCGCACTACCAGCAGCCGCTGCGCAGGACCAGCGTCT
CCAGCGTGACCAGCAGCAGGGTCGCGGCGGCGGCGGCGGCGCACGCGGCC
ACGCCGGGGTCGCCCGTCGGCAGCAGCAGCGCTCGGCAACGCAGCGGCGA
CAGCAGCAGCCGCGCCGCGTCACAGACGAACAGCCACCTGCGCCATGGGA
ACATGCGGCCGCCGCCGCCGCCGACGCAGGAGCAGCAGCGCGTGGCGGCG
GCGGCGGTGCGGCGGCAGCCGCAGGAGCACCAGCGCCACGCGAGCGGCAG
CGGCGGCAGCGGCGGCGAGCGCGTGCAGGGGGTCCTCGAGACCAACAAGG
CCCTGATCAAGCGCATGGGCGCAGCGTGCGACGGCAGCGACGGCGACGGC
GACAGCGAGGCGTCCGCCGCCGCGGACGCGCCTGCGGAGCACCGGCGCGC
GCCGCCGCCGCCGGCCGCCGCTGCTGCGCCGGGCGGCGACGCCGCGAGGG
CGAGCGGCGCGGCGGCAGCGACGGCAGGGGGGGGGCGGCGGCGCAGCAGC
GTTCTCGACGCGCTGAACGCGGGCGACGCGGAGGCCAACAAGTGGGTGCT
GGACACGGCGGCGCGTGCGCTGGCGGAGGACCCGGAGTGCTCGCTGAGCG
TCGCGGTGCGCACCATCGCGCGCGAGACAGCGGCGGAGGCGGTCCAGGTG
GGCGTCGGCCACGCCGTCAAGAGTCGCGTCGAGGAGTACCTGAGCCGCGG
CGCGGAGCTGCACAAGGGGCACGTGGCGGCGCTGGAGGGCAGGGTGTCGG
AGGGGCTGGCGGCGGTTGCGCAGCGGCTCGCGGACGTGGAGAGGCTCGTG
GAGCAGCAGCAGCAGCAGCGAAGCGAGGGCGGCGGTGGCGGCGGCGCGGG
GCGCTCTGCAGAGGCGGAGGGCGAGGTGGAGGCGCTCAAGCAGCTGCTGC
GGCACGCGTACGCGCTGGCCATGGAGTCGGAGGCGCTCATGGCCAAGGAG
CGCGAGGAGCACGCCGCGGCGGTAGACGGCCTCATTCAGCAGCTCAGGGG
CGACGACTTGAAGTTCGGCGCCGCGCTGCCGCCCGCCCACCCGACCTCTG
CCGCCGGCAGCTAGAGAGGATGGGGGGGCGTTTCTCTTTGAGTTCTGGCG
CAGCGTCATTGGTTCACATACTGTGCGGCAGCGGCGGATGTGCGGCACAG
TTGGCGCAGCGCTTTGAGGGGTTAGACGTGACTGCAACTGCCAAGCGGAT
CTGGG
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protein sequence of jgi.p|Trimin1|354004

>Trimin1|354004|estExt_Genemark1.C_Ctg_2020035 ID=Trimin1|354004|estExt_Genemark1.C_Ctg_2020035|Name=jgi.p|Trimin1|354004|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=538bp
MLGNLSPKRGISAEDVLLGSVVITKKNKRGLVKYRGTPAGKKGVWLGLEL
DEVGIHSGAVGGVTYYECREGSGVFVNEVLKVVRGPPAAPTSSKVASPPS
AAARRGSVERVRHVSSPQGSRNGGAGVTSAAGGKQMLSKRGSMSSQRSMR
GSAMADGRRRTSVTDSERGAPAHYQQPLRRTSVSSVTSSRVAAAAAAHAA
TPGSPVGSSSARQRSGDSSSRAASQTNSHLRHGNMRPPPPPTQEQQRVAA
AAVRRQPQEHQRHASGSGGSGGERVQGVLETNKALIKRMGAACDGSDGDG
DSEASAAADAPAEHRRAPPPPAAAAAPGGDAARASGAAAATAGGGRRRSS
VLDALNAGDAEANKWVLDTAARALAEDPECSLSVAVRTIARETAAEAVQV
GVGHAVKSRVEEYLSRGAELHKGHVAALEGRVSEGLAAVAQRLADVERLV
EQQQQQRSEGGGGGGAGRSAEAEGEVEALKQLLRHAYALAMESEALMAKE
REEHAAAVDGLIQQLRGDDLKFGAALPPAHPTSAAGS*
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mRNA from alignment at Contig_202:209418..211324-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15451 ID=mRNA_15451|Name=jgi.p|Trimin1|354004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1907bp|location=Sequence derived from alignment at Contig_202:209418..211324- (Tribonema minus UTEX_B_3156 )
ATGCTGGGCAATCTGTCGCCCAAGCGTGGCATTAGCGCCGAGGACGTCCT
TCTGGGCAGCGTGGTGATCACCAAGAAAAACAAAAGGGGTCTCGTCAAGT
ATAGGGGCACGCCGGCAGGCAAAAAGGGAGTGTGGCTAGGTAAGACATGA
ATTAATTCATTGGCTGCGTGTGCCAGACTCGCATCGCCTTTCAGATTCGC
AGCCGACGAGGGTTGTCCGCCTGCTTCCGTTAGCAGCAGTGTTCACTCGC
GTTGCCATAAACCACTGCCACTCTTCTGTTGTCTTGCGCAGGCCTGGAGC
TGGATGAGGTAGGCATACACAGCGGCGCTGTGGGCGGCGTCACGTACTAT
GAATGTCGCGAGGGCTCAGGGGTATTTGTCAACGAGGTGCTCAAGGTCGT
CAGGGGGCCGCCGGCTGCTCCAACCAGCAGCAAGGTGGCATCTCCGCCTA
GTGCAGCGGCGCGCCGTGGCTCTGTCGAGCGCGTCCGCCATGTGAGCAGC
CCCCAGGGCTCGCGCAACGGCGGCGCCGGCGTCACCTCCGCCGCGGGCGG
CAAGCAGATGCTCTCCAAGCGCGGCAGCATGTCGTCGCAGCGCAGCATGA
GGGGCAGCGCGATGGCCGACGGGCGCCGCCGCACCAGCGTAACAGACTCC
GAGAGGGGCGCGCCTGCGCACTACCAGCAGCCGCTGCGCAGGACCAGCGT
CTCCAGCGTGACCAGCAGCAGGGTCGCGGCGGCGGCGGCGGCGCACGCGG
CCACGCCGGGGTCGCCCGTCGGCAGCAGCAGCGCTCGGCAACGCAGCGGC
GACAGCAGCAGCCGCGCCGCGTCACAGACGAACAGCCACCTGCGCCATGG
GAACATGCGGCCGCCGCCGCCGCCGACGCAGGAGCAGCAGCGCGTGGCGG
CGGCGGCGGTGCGGCGGCAGCCGCAGGAGCACCAGCGCCACGCGAGCGGC
AGCGGCGGCAGCGGCGGCGAGCGCGTGCAGGGGGTCCTCGAGACCAACAA
GGCCCTGATCAAGCGCATGGGCGCAGCGTGCGACGGCAGCGACGGCGACG
GCGACAGCGAGGCGTCCGCCGCCGCGGACGCGCCTGCGGAGCACCGGCGC
GCGCCGCCGCCGCCGGCCGCCGCTGCTGCGCCGGGCGGCGACGCCGCGAG
GGCGAGCGGCGCGGCGGCAGCGACGGCAGGGGGGGGGCGGCGGCGCAGCA
GCGTTCTCGACGCGCTGAACGCGGGCGACGCGGAGGCCAACAAGTGGGTG
CTGGACACGGCGGCGCGTGCGCTGGCGGAGGACCCGGAGTGCTCGCTGAG
CGTCGCGGTGCGCACCATCGCGCGCGAGACAGCGGCGGAGGCGGTCCAGG
TGGGCGTCGGCCACGCCGTCAAGAGTCGCGTCGAGGAGTACCTGAGCCGC
GGCGCGGAGCTGCACAAGGGGCACGTGGCGGCGCTGGAGGGCAGGGTGTC
GGAGGGGCTGGCGGCGGTTGCGCAGCGGCTCGCGGACGTGGAGAGGCTCG
TGGAGCAGCAGCAGCAGCAGCGAAGCGAGGGCGGCGGTGGCGGCGGCGCG
GGGCGCTCTGCAGAGGCGGAGGGCGAGGTGGAGGCGCTCAAGCAGCTGCT
GCGGCACGCGTACGCGCTGGCCATGGAGTCGGAGGCGCTCATGGCCAAGG
AGCGCGAGGAGCACGCCGCGGCGGTAGACGGCCTCATTCAGCAGCTCAGG
GGCGACGACTTGAAGTTCGGCGCCGCGCTGCCGCCCGCCCACCCGACCTC
TGCCGCCGGCAGCTAGAGAGGATGGGGGGGCGTTTCTCTTTGAGTTCTGG
CGCAGCGTCATTGGTTCACATACTGTGCGGCAGCGGCGGATGTGCGGCAC
AGTTGGCGCAGCGCTTTGAGGGGTTAGACGTGACTGCAACTGCCAAGCGG
ATCTGGG
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Coding sequence (CDS) from alignment at Contig_202:209418..211324-

>mRNA_15451 ID=mRNA_15451|Name=jgi.p|Trimin1|354004|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1614bp|location=Sequence derived from alignment at Contig_202:209418..211324- (Tribonema minus UTEX_B_3156 )
ATGCTGGGCAATCTGTCGCCCAAGCGTGGCATTAGCGCCGAGGACGTCCT
TCTGGGCAGCGTGGTGATCACCAAGAAAAACAAAAGGGGTCTCGTCAAGT
ATAGGGGCACGCCGGCAGGCAAAAAGGGAGTGTGGCTAGGCCTGGAGCTG
GATGAGGTAGGCATACACAGCGGCGCTGTGGGCGGCGTCACGTACTATGA
ATGTCGCGAGGGCTCAGGGGTATTTGTCAACGAGGTGCTCAAGGTCGTCA
GGGGGCCGCCGGCTGCTCCAACCAGCAGCAAGGTGGCATCTCCGCCTAGT
GCAGCGGCGCGCCGTGGCTCTGTCGAGCGCGTCCGCCATGTGAGCAGCCC
CCAGGGCTCGCGCAACGGCGGCGCCGGCGTCACCTCCGCCGCGGGCGGCA
AGCAGATGCTCTCCAAGCGCGGCAGCATGTCGTCGCAGCGCAGCATGAGG
GGCAGCGCGATGGCCGACGGGCGCCGCCGCACCAGCGTAACAGACTCCGA
GAGGGGCGCGCCTGCGCACTACCAGCAGCCGCTGCGCAGGACCAGCGTCT
CCAGCGTGACCAGCAGCAGGGTCGCGGCGGCGGCGGCGGCGCACGCGGCC
ACGCCGGGGTCGCCCGTCGGCAGCAGCAGCGCTCGGCAACGCAGCGGCGA
CAGCAGCAGCCGCGCCGCGTCACAGACGAACAGCCACCTGCGCCATGGGA
ACATGCGGCCGCCGCCGCCGCCGACGCAGGAGCAGCAGCGCGTGGCGGCG
GCGGCGGTGCGGCGGCAGCCGCAGGAGCACCAGCGCCACGCGAGCGGCAG
CGGCGGCAGCGGCGGCGAGCGCGTGCAGGGGGTCCTCGAGACCAACAAGG
CCCTGATCAAGCGCATGGGCGCAGCGTGCGACGGCAGCGACGGCGACGGC
GACAGCGAGGCGTCCGCCGCCGCGGACGCGCCTGCGGAGCACCGGCGCGC
GCCGCCGCCGCCGGCCGCCGCTGCTGCGCCGGGCGGCGACGCCGCGAGGG
CGAGCGGCGCGGCGGCAGCGACGGCAGGGGGGGGGCGGCGGCGCAGCAGC
GTTCTCGACGCGCTGAACGCGGGCGACGCGGAGGCCAACAAGTGGGTGCT
GGACACGGCGGCGCGTGCGCTGGCGGAGGACCCGGAGTGCTCGCTGAGCG
TCGCGGTGCGCACCATCGCGCGCGAGACAGCGGCGGAGGCGGTCCAGGTG
GGCGTCGGCCACGCCGTCAAGAGTCGCGTCGAGGAGTACCTGAGCCGCGG
CGCGGAGCTGCACAAGGGGCACGTGGCGGCGCTGGAGGGCAGGGTGTCGG
AGGGGCTGGCGGCGGTTGCGCAGCGGCTCGCGGACGTGGAGAGGCTCGTG
GAGCAGCAGCAGCAGCAGCGAAGCGAGGGCGGCGGTGGCGGCGGCGCGGG
GCGCTCTGCAGAGGCGGAGGGCGAGGTGGAGGCGCTCAAGCAGCTGCTGC
GGCACGCGTACGCGCTGGCCATGGAGTCGGAGGCGCTCATGGCCAAGGAG
CGCGAGGAGCACGCCGCGGCGGTAGACGGCCTCATTCAGCAGCTCAGGGG
CGACGACTTGAAGTTCGGCGCCGCGCTGCCGCCCGCCCACCCGACCTCTG
CCGCCGGCAGCTAG
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