Trimin1|353732|estExt_Genemark1.C_Ctg_1800005 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353732
Unique Name	Trimin1\|353732\|estExt_Genemark1.C_Ctg_1800005
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	281

Homology

[Close]

BLAST of jgi.p|Trimin1|353732 vs. uniprot
Match: A0A836CHX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX2_9STRA)

HSP 1 Score: 511 bits (1316), Expect = 2.580e-182
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0

Query:    1 MVAEVQQAIAAERSALSELQREKEAVVTVRRSVSQELPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280
            MVAEVQQAIAAERSALSELQREKEAVVTVRRSVSQELPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT
Sbjct:    1 MVAEVQQAIAAERSALSELQREKEAVVTVRRSVSQELPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280

[Close]

BLAST of jgi.p|Trimin1|353732 vs. uniprot
Match: A0A835YJA4_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA4_9STRA)

HSP 1 Score: 424 bits (1091), Expect = 9.370e-147
Identity = 235/243 (96.71%), Postives = 236/243 (97.12%), Query Frame = 0

Query:   38 PIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280
            P AFSFRDPATRSGKATARSYQALYTGFKLMRAAL  AELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHH+LAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP  YG CWVWWRHVKEQNPVP NVVPGPCKYRHSDT
Sbjct:  126 PNAFSFRDPATRSGKATARSYQALYTGFKLMRAAL--AELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP--YGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT 364

[Close]

BLAST of jgi.p|Trimin1|353732 vs. uniprot
Match: A0A836CLL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL4_9STRA)

HSP 1 Score: 425 bits (1093), Expect = 2.290e-145
Identity = 235/248 (94.76%), Postives = 237/248 (95.56%), Query Frame = 0

Query:   33 VSQELPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280
            VS   PIAFSFRDPATRSGKATARSYQALYTGFKLMRAAL  AELIGLGLTELPQGSRTF+SEM VCEVMLAKFEMLVVHQEGVTISDADLAAIQGAI SDLDEWTSNLDA+STSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP  YG CWVWWRHVKEQNP PCNVVPGPCKYRHSDT
Sbjct:  133 VSNLQPIAFSFRDPATRSGKATARSYQALYTGFKLMRAAL--AELIGLGLTELPQGSRTFVSEMAVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIQSDLDEWTSNLDAMSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP--YGVCWVWWRHVKEQNPAPCNVVPGPCKYRHSDT 376

[Close]

BLAST of jgi.p|Trimin1|353732 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.240e-52
Identity = 107/126 (84.92%), Postives = 109/126 (86.51%), Query Frame = 0

Query:   48 TRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVA 173
            T  GKATARSYQALY G KLMRA     ELIGLGLTELPQGSRTFMS+MEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDL    +  DALST LLQHHRL PPFGSGEALDVPDIPTVA
Sbjct:   75 TAVGKATARSYQALYKGVKLMRA-----ELIGLGLTELPQGSRTFMSKMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLTSGPAT-DALSTILLQHHRLPPPFGSGEALDVPDIPTVA 194

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353732 vs. uniprot

BLAST of jgi.p|Trimin1|353732 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A836CHX2_9STRA	2.580e-182	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YJA4_9STRA	9.370e-147	96.71	Uncharacterized protein n=4 Tax=Tribonema minus Ta...	[more]
A0A836CLL4_9STRA	2.290e-145	94.76	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CCV7_9STRA	2.240e-52	84.92	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_180	contig	Contig_180:52177..56068 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353732	mRNA_17775	Tribonema minus UTEX_B_3156	mRNA	Contig_180 52177..56155 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353732|estExt_Genemark1.C_Ctg_1800005 ID=Trimin1|353732|estExt_Genemark1.C_Ctg_1800005|Name=jgi.p|Trimin1|353732|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp
MVAEVQQAIAAERSALSELQREKEAVVTVRRSVSQELPIAFSFRDPATRS
GKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCE
VMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQ
HHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKY
DGAFRGGGRPVGSGGGGAGAGRGAGAAAGAGGTRSQPRGAPANCPKAYGG
CWVWWRHVKEQNPVPCNVVPGPCKYRHSDT*