mRNA_17775 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353732 vs. uniprot
Match: A0A836CHX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX2_9STRA) HSP 1 Score: 511 bits (1317), Expect = 5.780e-182 Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 1
Query: 1 MVAEVQQAIAAERSALSELQREKEAVVTVRRSVSQELPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 840
MVAEVQQAIAAERSALSELQREKEAVVTVRRSVSQELPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT
Sbjct: 1 MVAEVQQAIAAERSALSELQREKEAVVTVRRSVSQELPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280
BLAST of jgi.p|Trimin1|353732 vs. uniprot
Match: A0A836CLL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL4_9STRA) HSP 1 Score: 482 bits (1240), Expect = 3.530e-167 Identity = 264/278 (94.96%), Postives = 266/278 (95.68%), Query Frame = 1
Query: 97 VSQELPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT*GGGPLSLRERGPMAAAVTREAAEVWGLTR 930
VS PIAFSFRDPATRSGKATARSYQALYTGFKLMRAAL AELIGLGLTELPQGSRTF+SEM VCEVMLAKFEMLVVHQEGVTISDADLAAIQGAI SDLDEWTSNLDA+STSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP YG CWVWWRHVKEQNP PCNVVPGPCKYRHSDT GGGPLSLRERGPMAAAVTREAAEVWGLTR
Sbjct: 133 VSNLQPIAFSFRDPATRSGKATARSYQALYTGFKLMRAAL--AELIGLGLTELPQGSRTFVSEMAVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIQSDLDEWTSNLDAMSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP--YGVCWVWWRHVKEQNPAPCNVVPGPCKYRHSDTKGGGPLSLRERGPMAAAVTREAAEVWGLTR 406
BLAST of jgi.p|Trimin1|353732 vs. uniprot
Match: A0A835YJA4_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA4_9STRA) HSP 1 Score: 425 bits (1092), Expect = 2.050e-146 Identity = 235/243 (96.71%), Postives = 236/243 (97.12%), Query Frame = 1
Query: 112 PIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 840
P AFSFRDPATRSGKATARSYQALYTGFKLMRAAL AELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHH+LAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP YG CWVWWRHVKEQNPVP NVVPGPCKYRHSDT
Sbjct: 126 PNAFSFRDPATRSGKATARSYQALYTGFKLMRAAL--AELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP--YGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT 364
BLAST of jgi.p|Trimin1|353732 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA) HSP 1 Score: 206 bits (524), Expect = 3.080e-56 Identity = 140/263 (53.23%), Postives = 146/263 (55.51%), Query Frame = 1
Query: 142 TRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT*GGGPLSLRERGPMAAAVTREAAEVWGLTR 930
T GKATARSYQALY G KLMRA ELIGLGLTELPQGSRTFMS+MEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDL + DALST LLQHHRL PPFGSGEALDVPDIPTVA AL+V P+ RH+ GGGPLSL+ERGPMAAAVTR AAEVWGLTR
Sbjct: 75 TAVGKATARSYQALYKGVKLMRA-----ELIGLGLTELPQGSRTFMSKMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLTSGPAT-DALSTILLQHHRLPPPFGSGEALDVPDIPTVA------ALQVP-------------------------PL--------------------------------------------RHL-----------------------GGGPLSLQERGPMAAAVTRVAAEVWGLTR 233 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353732 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17775 ID=mRNA_17775|Name=jgi.p|Trimin1|353732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=930bp|location=Sequence derived from alignment at Contig_180:52177..56155+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGGCGGAGGTGCAGCAGGCGATAGCAGCAGAGAGAAGCGCTTTGAGback to top protein sequence of jgi.p|Trimin1|353732 >Trimin1|353732|estExt_Genemark1.C_Ctg_1800005 ID=Trimin1|353732|estExt_Genemark1.C_Ctg_1800005|Name=jgi.p|Trimin1|353732|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp MVAEVQQAIAAERSALSELQREKEAVVTVRRSVSQELPIAFSFRDPATRSback to top mRNA from alignment at Contig_180:52177..56155+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17775 ID=mRNA_17775|Name=jgi.p|Trimin1|353732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3979bp|location=Sequence derived from alignment at Contig_180:52177..56155+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_180:52177..56155+ >mRNA_17775 ID=mRNA_17775|Name=jgi.p|Trimin1|353732|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=843bp|location=Sequence derived from alignment at Contig_180:52177..56155+ (Tribonema minus UTEX_B_3156 )back to top |