Trimin1|353300|estExt_Genemark1.C_Ctg_1550019 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353300
Unique Name	Trimin1\|353300\|estExt_Genemark1.C_Ctg_1550019
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	62

Homology

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BLAST of jgi.p|Trimin1|353300 vs. uniprot
Match: A0A836CKJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.370e-41
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query:    1 MSVLEGRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFANTQEGEQQTWDP 62
            MSVLEGRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFANTQEGEQQTWDP
Sbjct:    1 MSVLEGRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFANTQEGEQQTWDP 62

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BLAST of jgi.p|Trimin1|353300 vs. uniprot
Match: A0A836CCL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0

Query:    6 GRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFANTQEGEQQTWDP 62
            GRLVWA  +    W+PAETC+PD+ASL R+       + MVLYFAN ++GE QT++P
Sbjct:  485 GRLVWAHPESWPQWFPAETCIPDRASLLRMVADTTAHYIMVLYFANVEKGELQTYEP 541

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353300 vs. uniprot

BLAST of jgi.p|Trimin1|353300 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CKJ5_9STRA	2.370e-41	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CCL4_9STRA	1.490e-12	52.63	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	63748	Tudor/PWWP/MBT	coord: 6..52

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_155	contig	Contig_155:170984..173958 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353300	mRNA_15846	Tribonema minus UTEX_B_3156	mRNA	Contig_155 170983..173958 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353300|estExt_Genemark1.C_Ctg_1550019 ID=Trimin1|353300|estExt_Genemark1.C_Ctg_1550019|Name=jgi.p|Trimin1|353300|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=62bp
MSVLEGRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFA
NTQEGEQQTWDP