mRNA_15846 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353300
Unique NamemRNA_15846
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353300 vs. uniprot
Match: A0A836CKJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.370e-41
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 MSVLEGRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFANTQEGEQQTWDP 186
            MSVLEGRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFANTQEGEQQTWDP
Sbjct:    1 MSVLEGRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFANTQEGEQQTWDP 62
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BLAST of jgi.p|Trimin1|353300 vs. uniprot
Match: A0A836CCL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   16 GRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFANTQEGEQQTWDP 186
            GRLVWA  +    W+PAETC+PD+ASL R+       + MVLYFAN ++GE QT++P
Sbjct:  485 GRLVWAHPESWPQWFPAETCIPDRASLLRMVADTTAHYIMVLYFANVEKGELQTYEP 541
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353300 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CKJ5_9STRA2.370e-41100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCL4_9STRA1.490e-1252.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_155contigContig_155:170983..173958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353300|estExt_Genemark1.C_Ctg_1550019
Hectar predicted targeting categoryother localisation
TranscriptId353622
TrackFilteredModels1
ProteinId353300
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353300gene_15846Tribonema minus UTEX_B_3156 geneContig_155 170983..173958 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15846_3exon_15846_3Tribonema minus UTEX_B_3156 exonContig_155 170983..171006 -
exon_15846_2exon_15846_2Tribonema minus UTEX_B_3156 exonContig_155 171769..171911 -
exon_15846_1exon_15846_1Tribonema minus UTEX_B_3156 exonContig_155 173939..173958 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15846UTR3_15846Tribonema minus UTEX_B_3156 three_prime_UTRContig_155 170983..170983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15846CDS_15846Tribonema minus UTEX_B_3156 CDSContig_155 173939..173958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353300Trimin1|353300|estExt_Genemark1.C_Ctg_1550019Tribonema minus UTEX_B_3156 polypeptideContig_155 170984..173958 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15846 ID=mRNA_15846|Name=jgi.p|Trimin1|353300|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=187bp|location=Sequence derived from alignment at Contig_155:170983..173958- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTGCTGGAGGGCAGGCTGGTGTGGGCGCAAACGCAGATCTCCGC
CGACTGGTGGCCAGCTGAGACGTGTGTTCCAGACAAGGCCTCGCTGGCGC
GCGTGAAACCCGGGTGGAAAGGGCGCTTCAGCATGGTCCTCTACTTTGCC
AACACGCAAGAAGGGGAGCAGCAGACCTGGGACCCGC
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protein sequence of jgi.p|Trimin1|353300

>Trimin1|353300|estExt_Genemark1.C_Ctg_1550019 ID=Trimin1|353300|estExt_Genemark1.C_Ctg_1550019|Name=jgi.p|Trimin1|353300|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=62bp
MSVLEGRLVWAQTQISADWWPAETCVPDKASLARVKPGWKGRFSMVLYFA
NTQEGEQQTWDP
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mRNA from alignment at Contig_155:170983..173958-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15846 ID=mRNA_15846|Name=jgi.p|Trimin1|353300|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2976bp|location=Sequence derived from alignment at Contig_155:170983..173958- (Tribonema minus UTEX_B_3156 )
ATGTCCGTGCTGGAGGGCAGGTATGTATGTATGAGTCGCTACTCTGGGGT
ATGTATGTATGAGTTGCTGCTTTGAGTTCTCAACATATATTCATTGTGTT
CTCGCCGAGCTCGACTGATGCGACTTGTGTGTGAAAGTCCAGCATGTTGT
GGGTGTCAATGGCTGTGCCGTCCGTAGCTGTCATCAAGCGACAGCGCCAT
GTAAGTGGCGTTTCGTTCCTTAATACTTCGCGAAGTATGAGGATGCAGTA
CTTGAAGAATGATGGTGCTGTTAAGGGATGAAGCTGCAGGTGGGGGCACA
ATTGCATGTGATTTTCCCAGTACCTGAAGCAAATGGCTTGACTTCCACGT
CAAGATGTACTTCAAGGCATGACTGTGTGTGACGTGAGGCACCCATGCGA
CTCTTACGCGCCACCACATGTCTTTGCGTAGAGGCATTCAACTGCGCTGA
AGCTTGCTCTCATTGGCATAAACGCTGACAGGTGGACAGAACTGCTGGTA
GAGGCGATTGGTGGCACCATACAGTGGCACAAGCCCGAGCGGCCCTCGCC
AGGCGTGGTGCAAGCCGCAAAGACAGCGTGGCGTGCTCTGGCAAGCCCCA
AGTCCAACCCTAATCAGGGGGGAAAGGGGGACGCCGCTGCCTCACGGCCC
GCCAAATGCACTCGCTCCGCCACTGAGGTGATGCATGTGGAAGCGCTCCG
GAGGCTAGGGTTGACGTTTGCATATGGTTGAAGTTTTGAGCTTGATGATG
CATCCTTTTCCCCACTGTAGACCCTGATCATAGGCAGTGGGGCTGCGGCA
GCGGAAGGAGGCACGTGGACATGCCAAACGCAGAACGGTTTACACTCGAA
ACGTGTGTGCTGAACATGCAGAATATAGTTTGCCCGCAGCAGTAGACGTG
CAAGTCGCATCAAATAATCAGATGATCATGCTGATTTTTGTGGCGGCACA
ATGGCATACACCGCTGTCATCCTAGCACACACTGACATGCTGTCATAGAC
GGGTGTCATATCTGCGCCTGTAGTGCTGGTCAGGGTTAACTTCAGGACCT
GCTGCCTAAGGCAGAGGTTAGGGCTAGGCGCAACGCTAAACCAAGGGTCG
CATACCTCCACAGGGCCTCGAGTGTCCGTCAGTTTTTGTTTGTGAGTGCG
CCACCGTAAACGATTGAACATTTGCTGGCGCATGTGCAACTTCAAGCTGG
TGCATGGTGTAACCTCAAGATTTGAAGTTGACTGTTGACACGCACATCAG
ACAGCAGCCATAGGACGGGGCGACGCGAATTGCAGTTGCTCAAACCTGAA
GGCGGGCATGCGTGCTTCTCATCTTCTCACCGTCAGAACTTTGTGGCTAC
AGTGTATGTATATTACGACTTTGCAGTACATTCGTGCATGCTGTGCTCTG
AGAACACTGTGGCTGACTCTGAGTCCATGGCGATTTTTGCAGTACAACTT
TGCATGACTTTGTGTGTTGTGCAGTGCTGCATCTCACCACTGCCCTCTGC
ATTGCACATGTGGCAGACTGATGGCGTGGCAACTCAGGAGTCGACAGAGT
CCCACAAGGGGGATGATGAGTCTGACTCCGATTCTGACTCATCTGAGGAG
CACTTCAAGTCAGATGCAATCACCAAGGCTCAACGGACTGGAAGGTACCA
CGTGCAATGTTTGGTTTGTTTGTGTGGCTGCGATGCGTTCCATATGGTGA
CAGTTACGGGGGGAGCACCTGGCGATGCTTTTAAGTGGAAAACAGTGTCA
GGAAACGTTCAATGAAATCGGTAAGCAGACACTTCTGTAAATGCATGTGC
TTCCTGGAGCATCAGTAGGTGCTTCACATCATCACATGCAGGTGCTTCAG
TTGATGTGAGTGCTATCGCATCTACTCGTCCATTTCATTGTGAAGGGTGT
AGGCATGATAGCCGTGGCCAATACAACTGTCAGCCTGACTTGTCAGAAGA
GCCAAACGAGGTGTGCTGACTAGCTGAAGCCTTGGAAGAATACAGATTGC
AACGGCATGCCTGCTGACCCAACTTCCACTGCTGCTGCTGTTGCCAGGCT
GGTGTGGGCGCAAACGCAGATCTCCGCCGACTGGTGGCCAGCTGAGACGT
GTGTTCCAGACAAGGCCTCGCTGGCGCGCGTGAAACCCGGGTGGAAAGGG
CGCTTCAGCATGGTCCTCTACTTTGCCAACACGCAAGAAGGCAAGTGCAT
CTTCTGAGATTTGCGTACCAGCAGGTGTAAATAGACATTTGGATTATGGA
CCAGGCTGCAACTTCAAGCAATGCCTCTGTACACGTGGGGACTGCCTGAG
AAGGCCCCTTTGCCATCTATTCAGTGTGATCCTAAACTACAATCCCGCAT
GCTGTTCTGCCGTCTTTGAGAGCATTCCAGCCGCATCATCCATGTAACGG
CGCGTTTCTTGGCTGCTAAGTTCTTGCAAGCAGTCATCACATGCGAGCCA
TGCAAACCCATGCATGCATATGCCGTTTGCGACTGGTGCACTCAACTCTA
TAGCGCAGGAGGCAGTTGCGTAGGTGGGTGGACATGCAGGTTGGATCGGG
TAATGTGAAAGCATTCGTATGCAGCTGCCGCATTATCGAGAGCAGTACAC
AAAGCACCTGCTGCTTCATACAGGCTTGCATACCTGTCTCACCATATCAG
CAGAAGTGCTGCCATATGCTTCTGCTTGACAGCAGCATGTTTTGAAGCAT
CACTCACACTAAAGTAAGTCCCCACAACTTTCTCAGCAACAGTGTGCTAC
ACCCCTGTCCCCGCTTGCCACTGCTGTGCCGACAGGGGAGCAGCAGACCT
GGGACCCCCTGCCATGCAGAAATGTGGAGCTCTTTGACTTGTTAAAGGAC
AGCAGCATGTTTTGCAGCATCACTCACAAAGTAAATTATCATAACGGTCT
CAGCATAACTCTGCTACACCCTCTGCCCCGCTTGCCACTGCTGTGTTGAC
AGGGGAGCAGCAGACCTGGGACCCGC
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Coding sequence (CDS) from alignment at Contig_155:170983..173958-

>mRNA_15846 ID=mRNA_15846|Name=jgi.p|Trimin1|353300|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=186bp|location=Sequence derived from alignment at Contig_155:170983..173958- (Tribonema minus UTEX_B_3156 )
ATGTCCGTGCTGGAGGGCAGGCTGGTGTGGGCGCAAACGCAGATCTCCGC
CGACTGGTGGCCAGCTGAGACGTGTGTTCCAGACAAGGCCTCGCTGGCGC
GCGTGAAACCCGGGTGGAAAGGGCGCTTCAGCATGGTCCTCTACTTTGCC
AACACGCAAGAAGGGGAGCAGCAGACCTGGGACCCG
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