Trimin1|352897|estExt_Genemark1.C_Ctg_1350040 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352897
Unique NameTrimin1|352897|estExt_Genemark1.C_Ctg_1350040
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length259
Homology
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BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 525 bits (1351), Expect = 2.180e-188
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS 258
            MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS 258
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BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 447 bits (1149), Expect = 1.300e-157
Identity = 207/257 (80.54%), Postives = 235/257 (91.44%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKD 257
            MGKVIRGCRKG+GT+FT+HTRLRKGPVKLRK DYAE+ GY+KGVVK I+HE  RGAPIAK+QFQN Y +++DNEL VAAEG+Y G FIYCG KAQL VGN+LP+ ++PEG+VICN E+RPGDRG+ ARCSGDYAVVVTHDED GTTK+RLPSG KKT+ S CRAM+GI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPSTTKR+ SAG+KVGLIAARRTGRLRG+KKT+  KD
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLKKTAVDKD 257
[Close]
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 442 bits (1138), Expect = 6.380e-156
Identity = 207/257 (80.54%), Postives = 237/257 (92.22%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKD 257
            MGKVIRG RKG+G+VF SHT+ RKG VK RKLDYAERHGY+KGVVK+I+HEP RGAP+A + F+NPY +KKD EL+VA EGMY+GMFIYCGKKA LT+GNI+PVG+MPEG+V CN+E+ PGDRG+ ARCSGDYAVV++HDEDKGT++IRLPSGSKKTI S CRAMVGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPST+ RLASAG+KVGLIAARRTGRLRGIKK  +K+D
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIKKIVDKED 257
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BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 4.530e-155
Identity = 207/254 (81.50%), Postives = 235/254 (92.52%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
            MGKVIRG RKG+G +FTSHTRLRKGPVKLRKLDYAERHGYIKGVVK++IHEP RGAP+AK+QFQNPY++K+DNELIVA EGMY+G FIYCGKKA LTVGNI+PV SMPEG+V  ++E++ GDRG+ ARCSGDYAV+++HDE+KGT+K+RLPSGSKKTI S+CRAMVGI+AGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RLASAGQKVGLIAARRTGRLRGI+   E
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
[Close]
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 427 bits (1097), Expect = 1.120e-149
Identity = 196/251 (78.09%), Postives = 231/251 (92.03%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKK 251
            MGKV+RGCRKG+G+VF SHTRLRKGP KLR+LD++ER GY+KG+VKEI+HEP RGAP+A+IQFQNPY+Y+KDNEL+V AEGMY+G FI+CGKKA L+VGNILP+G +PEG+V+CNVES  GDRG+L + SG Y VV+T DEDKGT++IRLPSG+KKT+ + CRAMVGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHP GGGNHQHIGHPSTT R+ SAG+KVGLIAARRTGRLRG+KK
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251
[Close]
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA)

HSP 1 Score: 419 bits (1077), Expect = 1.250e-146
Identity = 194/251 (77.29%), Postives = 225/251 (89.64%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKK 251
            MGKV++ CRKG+G+VF SHTRLRKG V++R LD+ ER GYIKG+VK+IIHEP RGAP+AK+QF N YEYKKDN L+VAAEGMYTG FI+CGKKAQL VGNILP+G +PEG+V+CNVE+  GDRG+L + SG Y VV+T DEDKGTT+IRLPSG+KKT+ + CRAMVGI+AGGGRTDKPLLKAGRAYHKYRVKRNEWP++RGVA NPVEHP GGGNHQHIGHPSTT R+ SAG+KVGLIAARRTGRLRG+KK
Sbjct:    1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251
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BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 418 bits (1075), Expect = 4.320e-146
Identity = 192/254 (75.59%), Postives = 223/254 (87.80%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
            MGKV RG RKG+G++F SHTRLR G VK R LDYAER G+ KGV+K+ +HEP RGAP+AK+QF N Y YK+DN L VA EGMYTG F+YCGKKA+LTVGNILP+G+MPEG+++CN+E++PGDRG +A+CSGDYAVVVTHDEDKGTT++RLPSGSKKT+ + CRA VGI+AGGGRTDKPLLKAGRA+HKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPSTT+R   AG+K GLIAARRTGRL G K   E
Sbjct:   20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAGKKVIDE 273
[Close]
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 407 bits (1046), Expect = 6.130e-142
Identity = 190/254 (74.80%), Postives = 220/254 (86.61%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
            MG+VIRG RKG G +F SH + RKG    R  DY ER GYIKGV+KEIIH+P RGAP+A++ F++PY+Y+ ++EL++AAEGMYTGMFIY GKKA + VGNILP+  +PEG+++CNVE+R GD+G  ARCSGDYAV+VTHDEDKG TKIRLPSGSKKTI S CRAMVG++AGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHPHGGGNHQHIGHPST KR   AG+KVGLIAARRTGRLRGIKKT +
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDK 254
[Close]
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 407 bits (1046), Expect = 6.360e-142
Identity = 191/255 (74.90%), Postives = 222/255 (87.06%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEK 255
            MGKVIR CRKG G +F SHT+L K PVKLRKLDYAE+HGYIKGVVKEI+HE  RGAPIA++QF+N Y +K+D E  VA EG+Y+G FI+ GKKA L +GN+LP+  +PEG+V+ NVE+RPGDRGS AR SG YAV+V  DED+GTTKIRLPSG+KKT+ S+ R ++GIIAGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPST KR A AG+KVGL+AARRTGRLRGIKK +EK
Sbjct:    1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEK 255
[Close]
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD)

HSP 1 Score: 404 bits (1039), Expect = 7.140e-141
Identity = 188/254 (74.02%), Postives = 221/254 (87.01%), Query Frame = 0 
Query:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
            MG+VIRG RKG G +F SHT  R+G    R LDY ERHGYIKGVVKEIIH+  RGAP+A++ +++PY YK ++EL++AAEGMYTG FIY G KA +TVGNILP+ ++PEG+++CNVE+R GDRGS AR SGDYAV+VTHDEDKG TK+RLPSGSKKT+ S CRAM+G++AGGGRTDKP+LKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPST +R A +G+KVGLIAARRTGRLRGIKK  +
Sbjct:    1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIKKVEK 254
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZD66_9STRA2.180e-188100.00Translation protein SH3-like domain-containing pro... [more]
F0YEL9_AURAN1.300e-15780.54Ribosomal_L2_C domain-containing protein n=1 Tax=A... [more]
A0A7S2V227_9STRA6.380e-15680.54Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
D7G8U3_ECTSI4.530e-15581.50Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7R9UAP5_9STRA1.120e-14978.09Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U069_9STRA1.250e-14677.29Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WUG0_9STRA4.320e-14675.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A418F530_9STRA6.130e-14274.80Ribosomal_L2_C domain-containing protein n=14 Tax=... [more]
I2CPH3_NANGC6.360e-14274.90Large subunit ribosomal protein L8e n=1 Tax=Nannoc... [more]
K3X5U7_GLOUD7.140e-14174.02Ribosomal_L2_C domain-containing protein n=5 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2SMARTSM01383Ribosomal_L2_2coord: 11..90
e-value: 1.9E-32
score: 123.8
IPR002171Ribosomal protein L2PIRSFPIRSF002158RPL2p_RPL2a_RPL8e_RPL2ocoord: 1..256
e-value: 2.6E-68
score: 228.1
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 1..256
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 96..231
e-value: 1.3E-68
score: 243.9
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 98..221
e-value: 2.3E-45
score: 153.8
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 11..90
e-value: 4.5E-17
score: 61.8
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 1..86
e-value: 3.8E-35
score: 121.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..97
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 89..168
e-value: 2.0E-25
score: 90.4
IPR014726Ribosomal protein L2, domain 3GENE3D4.10.950.10Ribosomal protein L2, domain 3coord: 170..247
e-value: 1.5E-40
score: 139.4
NoneNo IPR availablePANTHERPTHR13691:SF1660S RIBOSOMAL PROTEIN L8coord: 1..256
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 197..208
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 99..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_135contigContig_135:359329..362600 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352897mRNA_14982Tribonema minus UTEX_B_3156 mRNAContig_135 359209..362630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352897|estExt_Genemark1.C_Ctg_1350040 ID=Trimin1|352897|estExt_Genemark1.C_Ctg_1350040|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIH
EPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGN
ILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRL
PSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVR
GVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIK
KTSEKKDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR022669Ribosomal_L2_C
IPR022666Rbsml_prot_L2_RNA-bd_dom
IPR012340NA-bd_OB-fold
IPR014722Rib_L2_dom2
IPR014726Ribosomal_L2_dom3
IPR022671Ribosomal_L2_CS
IPR008991Translation_prot_SH3-like_sf