mRNA_14982 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352897
Unique NamemRNA_14982
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 526 bits (1355), Expect = 4.010e-188
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS 804
            MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS 258          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 448 bits (1153), Expect = 2.300e-157
Identity = 207/257 (80.54%), Postives = 235/257 (91.44%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKD 801
            MGKVIRGCRKG+GT+FT+HTRLRKGPVKLRK DYAE+ GY+KGVVK I+HE  RGAPIAK+QFQN Y +++DNEL VAAEG+Y G FIYCG KAQL VGN+LP+ ++PEG+VICN E+RPGDRG+ ARCSGDYAVVVTHDED GTTK+RLPSG KKT+ S CRAM+GI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPSTTKR+ SAG+KVGLIAARRTGRLRG+KKT+  KD
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLKKTAVDKD 257          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 444 bits (1142), Expect = 1.130e-155
Identity = 207/257 (80.54%), Postives = 237/257 (92.22%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKD 801
            MGKVIRG RKG+G+VF SHT+ RKG VK RKLDYAERHGY+KGVVK+I+HEP RGAP+A + F+NPY +KKD EL+VA EGMY+GMFIYCGKKA LT+GNI+PVG+MPEG+V CN+E+ PGDRG+ ARCSGDYAVV++HDEDKGT++IRLPSGSKKTI S CRAMVGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPST+ RLASAG+KVGLIAARRTGRLRGIKK  +K+D
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIKKIVDKED 257          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 1.610e-154
Identity = 207/254 (81.50%), Postives = 235/254 (92.52%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 792
            MGKVIRG RKG+G +FTSHTRLRKGPVKLRKLDYAERHGYIKGVVK++IHEP RGAP+AK+QFQNPY++K+DNELIVA EGMY+G FIYCGKKA LTVGNI+PV SMPEG+V  ++E++ GDRG+ ARCSGDYAV+++HDE+KGT+K+RLPSGSKKTI S+CRAMVGI+AGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RLASAGQKVGLIAARRTGRLRGI+   E
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 427 bits (1099), Expect = 3.970e-149
Identity = 196/251 (78.09%), Postives = 231/251 (92.03%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKK 783
            MGKV+RGCRKG+G+VF SHTRLRKGP KLR+LD++ER GY+KG+VKEI+HEP RGAP+A+IQFQNPY+Y+KDNEL+V AEGMY+G FI+CGKKA L+VGNILP+G +PEG+V+CNVES  GDRG+L + SG Y VV+T DEDKGT++IRLPSG+KKT+ + CRAMVGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHP GGGNHQHIGHPSTT R+ SAG+KVGLIAARRTGRLRG+KK
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA)

HSP 1 Score: 420 bits (1079), Expect = 4.400e-146
Identity = 194/251 (77.29%), Postives = 225/251 (89.64%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKK 783
            MGKV++ CRKG+G+VF SHTRLRKG V++R LD+ ER GYIKG+VK+IIHEP RGAP+AK+QF N YEYKKDN L+VAAEGMYTG FI+CGKKAQL VGNILP+G +PEG+V+CNVE+  GDRG+L + SG Y VV+T DEDKGTT+IRLPSG+KKT+ + CRAMVGI+AGGGRTDKPLLKAGRAYHKYRVKRNEWP++RGVA NPVEHP GGGNHQHIGHPSTT R+ SAG+KVGLIAARRTGRLRG+KK
Sbjct:    1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 420 bits (1079), Expect = 7.520e-146
Identity = 194/264 (73.48%), Postives = 226/264 (85.61%), Query Frame = 1
Query:    1 WCADWLG*GSMGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 792
            W  D     +MGKV RG RKG+G++F SHTRLR G VK R LDYAER G+ KGV+K+ +HEP RGAP+AK+QF N Y YK+DN L VA EGMYTG F+YCGKKA+LTVGNILP+G+MPEG+++CN+E++PGDRG +A+CSGDYAVVVTHDEDKGTT++RLPSGSKKT+ + CRA VGI+AGGGRTDKPLLKAGRA+HKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPSTT+R   AG+K GLIAARRTGRL G K   E
Sbjct:   13 WATDSA---AMGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAGKKVIDE 273          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 408 bits (1049), Expect = 1.560e-141
Identity = 191/255 (74.90%), Postives = 222/255 (87.06%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEK 795
            MGKVIR CRKG G +F SHT+L K PVKLRKLDYAE+HGYIKGVVKEI+HE  RGAPIA++QF+N Y +K+D E  VA EG+Y+G FI+ GKKA L +GN+LP+  +PEG+V+ NVE+RPGDRGS AR SG YAV+V  DED+GTTKIRLPSG+KKT+ S+ R ++GIIAGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPST KR A AG+KVGL+AARRTGRLRGIKK +EK
Sbjct:    1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEK 255          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 408 bits (1048), Expect = 2.140e-141
Identity = 190/254 (74.80%), Postives = 220/254 (86.61%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 792
            MG+VIRG RKG G +F SH + RKG    R  DY ER GYIKGV+KEIIH+P RGAP+A++ F++PY+Y+ ++EL++AAEGMYTGMFIY GKKA + VGNILP+  +PEG+++CNVE+R GD+G  ARCSGDYAV+VTHDEDKG TKIRLPSGSKKTI S CRAMVG++AGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHPHGGGNHQHIGHPST KR   AG+KVGLIAARRTGRLRGIKKT +
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDK 254          
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD)

HSP 1 Score: 405 bits (1041), Expect = 2.480e-140
Identity = 188/254 (74.02%), Postives = 221/254 (87.01%), Query Frame = 1
Query:   31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 792
            MG+VIRG RKG G +F SHT  R+G    R LDY ERHGYIKGVVKEIIH+  RGAP+A++ +++PY YK ++EL++AAEGMYTG FIY G KA +TVGNILP+ ++PEG+++CNVE+R GDRGS AR SGDYAV+VTHDEDKG TK+RLPSGSKKT+ S CRAM+G++AGGGRTDKP+LKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPST +R A +G+KVGLIAARRTGRLRGIKK  +
Sbjct:    1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIKKVEK 254          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZD66_9STRA4.010e-188100.00Translation protein SH3-like domain-containing pro... [more]
F0YEL9_AURAN2.300e-15780.54Ribosomal_L2_C domain-containing protein n=1 Tax=A... [more]
A0A7S2V227_9STRA1.130e-15580.54Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
D7G8U3_ECTSI1.610e-15481.50Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7R9UAP5_9STRA3.970e-14978.09Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U069_9STRA4.400e-14677.29Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WUG0_9STRA7.520e-14673.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CPH3_NANGC1.560e-14174.90Large subunit ribosomal protein L8e n=1 Tax=Nannoc... [more]
A0A418F530_9STRA2.140e-14174.80Ribosomal_L2_C domain-containing protein n=14 Tax=... [more]
K3X5U7_GLOUD2.480e-14074.02Ribosomal_L2_C domain-containing protein n=5 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_135contigContig_135:359209..362630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352897|estExt_Genemark1.C_Ctg_1350040
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
KEGG ModuleM00177
KEGG Pathwayko03010,map03010
KEGG koko:K02938,ko:K09228
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904,GO:1990932
Preferred nameRPL8
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0090@1|root,KOG2309@2759|Eukaryota
Evalue2.13e-158
Seed ortholog44056.XP_009039021.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L2, C-terminal
Ec32 orthologEc-15_004240.1
TranscriptId353219
TrackFilteredModels1
ProteinId352897
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352897gene_14982Tribonema minus UTEX_B_3156 geneContig_135 359209..362630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352897Trimin1|352897|estExt_Genemark1.C_Ctg_1350040Tribonema minus UTEX_B_3156 polypeptideContig_135 359329..362600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14982_4exon_14982_4Tribonema minus UTEX_B_3156 exonContig_135 359209..359664 -
exon_14982_3exon_14982_3Tribonema minus UTEX_B_3156 exonContig_135 360057..360217 -
exon_14982_2exon_14982_2Tribonema minus UTEX_B_3156 exonContig_135 361354..361523 -
exon_14982_1exon_14982_1Tribonema minus UTEX_B_3156 exonContig_135 362491..362630 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14982UTR3_14982Tribonema minus UTEX_B_3156 three_prime_UTRContig_135 359209..359328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14982CDS_14982Tribonema minus UTEX_B_3156 CDSContig_135 362491..362600 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14982UTR5_14982Tribonema minus UTEX_B_3156 five_prime_UTRContig_135 362601..362630 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14982 ID=mRNA_14982|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=927bp|location=Sequence derived from alignment at Contig_135:359209..362630- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGTGTGCAGACTGGCTAGGCTGAGGGAGCATGGGTAAGGTTATCAGGGG
CTGCCGTAAAGGCAGAGGGACTGTTTTCACGTCCCACACTCGCCTGCGGA
AGGGCCCCGTCAAGCTTCGCAAGCTCGACTATGCCGAGAGGCACGGCTAC
ATCAAGGGCGTTGTGAAGGAGATCATCCACGAGCCCGCACGTGGCGCGCC
CATTGCCAAGATCCAGTTCCAGAACCCCTACGAGTACAAGAAGGACAACG
AGCTCATCGTGGCCGCCGAGGGCATGTACACTGGCATGTTCATCTACTGC
GGCAAGAAGGCCCAGCTCACCGTTGGCAACATCCTGCCCGTCGGCTCCAT
GCCTGAGGGGTCTGTGATCTGCAACGTGGAGTCCCGCCCCGGCGACCGCG
GGTCCCTTGCGCGTTGCTCTGGCGACTACGCCGTTGTCGTCACCCACGAC
GAGGACAAGGGCACCACCAAGATCCGCCTTCCCTCCGGCTCCAAGAAGAC
CATCTTCTCCAACTGCCGCGCCATGGTGGGCATCATCGCGGGCGGCGGCC
GCACGGACAAGCCCCTGCTCAAGGCCGGCCGCGCGTACCACAAGTACCGC
GTCAAGCGCAACGAGTGGCCGCGCGTGCGTGGTGTGGCCATGAACCCCGT
GGAGCACCCCCACGGTGGTGGTAACCACCAGCACATCGGCCACCCCTCCA
CCACCAAGAGGCTGGCCAGCGCGGGTCAGAAGGTGGGCCTCATCGCGGCC
CGCCGCACCGGGCGCCTGCGCGGCATAAAGAAGACGTCTGAGAAGAAGGA
CTCGTAGAGCGCTGCTGCTGCTGCTGCAGCTTCGCGCTCAGAGTTGCAGT
TGGGCTTGGAGTTGAGGTTGGGCTCACCGTCCACCGCCGCTGCCTGCATC
AAACAATGCACACCCCAGACACCAGCA
back to top

protein sequence of jgi.p|Trimin1|352897

>Trimin1|352897|estExt_Genemark1.C_Ctg_1350040 ID=Trimin1|352897|estExt_Genemark1.C_Ctg_1350040|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIH
EPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGN
ILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRL
PSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVR
GVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIK
KTSEKKDS*
back to top

mRNA from alignment at Contig_135:359209..362630-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14982 ID=mRNA_14982|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3422bp|location=Sequence derived from alignment at Contig_135:359209..362630- (Tribonema minus UTEX_B_3156 )
TGGTGTGCAGACTGGCTAGGCTGAGGGAGCATGGGTAAGGTTATCAGGGG CTGCCGTAAAGGCAGAGGGACTGTTTTCACGTCCCACACTCGCCTGCGGA AGGGCCCCGTCAAGCTTCGCAAGCTCGACTATGCCGAGAGGTGGGTTTTT GTAAGGCCTAGGACTGTAGGGCTAAGCTAAGCGCAATGTAGAGGTGGGAT CGTGTTACAGGTTGCGTTATTTTGGTTTCTGCAGCCGCTCTTTTGCTCTG GGCACCCTGGTGCCCAGTGCAACAATTTTGTCCTGCTGGTCTTGCTGATG GTAGCCAATGAGGATGTTTGAGTCGCACAAGAGGCTGGTGCGGCTCATCA TTGTGCTGTTGACGTTTGCGACGTCGTTGGTGGTCGCTGATACTCCTGCA AGTGCTTGTCCAGCTGCTTAGGGGACCATTTATATCTCAGTGTTGCCTGG GCCTGCCTGGGCTGGGCCAGTGCATCGACGTATTCAAAATCTGGGTCGGC GCTCATCTGCTTTATTGCCTGCAAGCATTGCCGGTGCTCTTAAATGTGTC GACTCGTGTCGTTGTTCTCACTCCGAAGGCTGGGTTGGCTGTCGAGCACG AAAGCAGATGCAGTCGTAGGACACATGGCAACTCCGCTTTTCTTGGGTAC CCTGCATTAGCAGGCCACTGGCTGCGTCTTCACAACATTCATATCTCCAC CTGAAGTCATGTATCAGCTCAGAGCGTGCTCAGGTGCTTTCATGGCACCG AAAGCTTGGCATTTGGCAGATACTCAACTCAATGCTTGGCAATTTGCATC TATAAACACACTTATTTTGCATGCTGAGCTGCCACCATCAGGTGAGGGTA CGCCTACTTCTGTCAAGGGCATTTCAAATGGAATTAGTCACAGCTACCTT GTAGATGCGCCATTTGTGTGCTACAGACTTACTGCGGCACACCGTGTTTT CTGTTGCATCGCAGCCTTCACCAATTACCCAGGAGATGATGACCCACTCA CTTTCTTTATCGCCAGCACTTTTGTCACATCTGCACCTATCCATACTCGC TTTGAAGCTTCGCACAGCCACTGACACTCGCTACCTTGCCGTTGTCACTT TTTCTAGGCACGGCTACATCAAGGGCGTTGTGAAGGAGATCATCCACGAG CCCGCACGTGGCGCGCCCATTGCCAAGATCCAGTTCCAGAACCCCTACGA GTACAAGAAGGACAACGAGCTCATCGTGGCCGCCGAGGGCATGTACACTG GCATGTTCATCTACTGCGGCAAGAAGGGTCAGTGAGGGATTCAGCGCTCG AGTCGTCTGCGAGTCATTCGCGAGTCACTCACTCGGTGACTGACTGAGCA ATGCCGTGATTACCAGCGCCTGCGACAGTGACGCCAGCGCATGCTGCGTC ACCGTCTTTTGCCTTGAGGCGCGATCCCCGCTTGTGTTGCCCCGTGCTGC ATTGCTCAGGGAGCTCCCTCCGCGTTGCTCCGTGACCACAGTCATAGGGA CACACTGGATGGCCGTGCTTCAGCACATGCAGCCTCACGGTTTGCTGGTG CTGCTGCGAGCGCCCCCAGTTTTTCCTTGTGCCTCTTTATCAGAGTTGCG CAGAGCGGGGTTCCCTGAGTGCTTTGGCATGGGGCAACTTGCACACAAGC GGCTGTGATCCACGGCTATGTTATGGGTGGCTCCCGCTAACAGCTCGTAT GGGTGGCTCCCGCGAACAGCCCGTATGGGTGGCACCCGCGAACAGCCATT GCGATGTCTCACACTCTGCTGTGTCACGTCACGTGCGTCATTGGACTGGA TTCGGAACTTGAGAGCGGCCCGGCGTGAGTGTCACTCAGTTGAAGTTGTC ACGTGCATTCGTGATAGGTTCGGTGCGTGTTTCGTGGTATGCACACCGTG GTGGGCCTGCTTTTGGCGCTTCAGGCCTCATAGACGCTAGCGGGAGCATT ATGATGTATTGCTAGGCATATGGCTGTTTTCACTTTGCTCTGTGGCAAGT GTGGTTAGTTGCAGCTACAGCTACAAGTTCTCGCTTTACTCTGTTGATGA AATGCAGCAGGCAGTCTTGAGCCTCAGCAATTCATTCCATGTGCAGGCGT CTGAGCGACATGCAGTGTTGCATGAACCCAGCATGCAGATGTTGCCTGCA AACCTCATGCAGTCCCATGCATCAGCATATTCTGTACGCATCATGCTGTC GCTCTCTGTCTTGCCAGTTTCTCACTGCAGTCAGCGCTCCTCTCTGGTTA TTGTTGGATTTCGCTGCCCTCTTCTTTGCAGTGTCAATGCAGTCACGCCT GTGACCCTCTCCCGACTGACAGCACCACACTCAGTCCTGTCATCAACACA CACTGCTACCTCATCTCTACGCTACGTTGACGCAACTTCAACTGTGTCTG CCTGCCGCTACAGCCCAGCTCACCGTTGGCAACATCCTGCCCGTCGGCTC CATGCCTGAGGGGTCTGTGATCTGCAACGTGGAGTCCCGCCCCGGCGACC GCGGGTCCCTTGCGCGTTGCTCTGGCGACTACGCCGTTGTCGTCACCCAC GACGAGGACAAGGGCACCACCAAGGTATGTATCTTACACCATTTTGTCAT TCACTTGTTTGCTCAATTTGAAACATTGTCAATGCAGGCGTACATGATTC GGGAGAGTTTGTGTCACATATGTTGTGTGTTGATCCACTTTGGCGAGTCT GTCGTTGTTCTCTCTGGTGACCAGGGCAAGGGTGTGTGATGCGTATGTAG CTACGCAGCTCGTGTCAGCTATTCTTACAGAATGATGTCATGATGAATGA GTATCCTGTCAGCTATTCTTGCAGAATGATGTCATGACGAATGAGTATCT TCTTCCTCTTCACTGTCCCTTGATGAGCTCATGGGGCACCACCCAGGTCG CGCTGCTTATCCGGTAATTTATACTTGAACTTGACGCCCCCCCACCCCTC CTTCCCTTTCTGCCAGATCCGCCTTCCCTCCGGCTCCAAGAAGACCATCT TCTCCAACTGCCGCGCCATGGTGGGCATCATCGCGGGCGGCGGCCGCACG GACAAGCCCCTGCTCAAGGCCGGCCGCGCGTACCACAAGTACCGCGTCAA GCGCAACGAGTGGCCGCGCGTGCGTGGTGTGGCCATGAACCCCGTGGAGC ACCCCCACGGTGGTGGTAACCACCAGCACATCGGCCACCCCTCCACCACC AAGAGGCTGGCCAGCGCGGGTCAGAAGGTGGGCCTCATCGCGGCCCGCCG CACCGGGCGCCTGCGCGGCATAAAGAAGACGTCTGAGAAGAAGGACTCGT AGAGCGCTGCTGCTGCTGCTGCAGCTTCGCGCTCAGAGTTGCAGTTGGGC TTGGAGTTGAGGTTGGGCTCACCGTCCACCGCCGCTGCCTGCATCAAACA ATGCACACCCCAGACACCAGCA
back to top

Coding sequence (CDS) from alignment at Contig_135:359209..362630-

>mRNA_14982 ID=mRNA_14982|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_135:359209..362630- (Tribonema minus UTEX_B_3156 )
ATGGGTAAGGTTATCAGGGGCTGCCGTAAAGGCAGAGGGACTGTTTTCAC
GTCCCACACTCGCCTGCGGAAGGGCCCCGTCAAGCTTCGCAAGCTCGACT
ATGCCGAGAGGCACGGCTACATCAAGGGCGTTGTGAAGGAGATCATCCAC
GAGCCCGCACGTGGCGCGCCCATTGCCAAGATCCAGTTCCAGAACCCCTA
CGAGTACAAGAAGGACAACGAGCTCATCGTGGCCGCCGAGGGCATGTACA
CTGGCATGTTCATCTACTGCGGCAAGAAGGCCCAGCTCACCGTTGGCAAC
ATCCTGCCCGTCGGCTCCATGCCTGAGGGGTCTGTGATCTGCAACGTGGA
GTCCCGCCCCGGCGACCGCGGGTCCCTTGCGCGTTGCTCTGGCGACTACG
CCGTTGTCGTCACCCACGACGAGGACAAGGGCACCACCAAGATCCGCCTT
CCCTCCGGCTCCAAGAAGACCATCTTCTCCAACTGCCGCGCCATGGTGGG
CATCATCGCGGGCGGCGGCCGCACGGACAAGCCCCTGCTCAAGGCCGGCC
GCGCGTACCACAAGTACCGCGTCAAGCGCAACGAGTGGCCGCGCGTGCGT
GGTGTGGCCATGAACCCCGTGGAGCACCCCCACGGTGGTGGTAACCACCA
GCACATCGGCCACCCCTCCACCACCAAGAGGCTGGCCAGCGCGGGTCAGA
AGGTGGGCCTCATCGCGGCCCGCCGCACCGGGCGCCTGCGCGGCATAAAG
AAGACGTCTGAGAAGAAGGACTCGTAG
back to top