mRNA_14982 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA) HSP 1 Score: 526 bits (1355), Expect = 4.010e-188 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS 804 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS Sbjct: 1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKDS 258
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN) HSP 1 Score: 448 bits (1153), Expect = 2.300e-157 Identity = 207/257 (80.54%), Postives = 235/257 (91.44%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKD 801 MGKVIRGCRKG+GT+FT+HTRLRKGPVKLRK DYAE+ GY+KGVVK I+HE RGAPIAK+QFQN Y +++DNEL VAAEG+Y G FIYCG KAQL VGN+LP+ ++PEG+VICN E+RPGDRG+ ARCSGDYAVVVTHDED GTTK+RLPSG KKT+ S CRAM+GI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPSTTKR+ SAG+KVGLIAARRTGRLRG+KKT+ KD Sbjct: 1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLKKTAVDKD 257
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA) HSP 1 Score: 444 bits (1142), Expect = 1.130e-155 Identity = 207/257 (80.54%), Postives = 237/257 (92.22%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEKKD 801 MGKVIRG RKG+G+VF SHT+ RKG VK RKLDYAERHGY+KGVVK+I+HEP RGAP+A + F+NPY +KKD EL+VA EGMY+GMFIYCGKKA LT+GNI+PVG+MPEG+V CN+E+ PGDRG+ ARCSGDYAVV++HDEDKGT++IRLPSGSKKTI S CRAMVGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPST+ RLASAG+KVGLIAARRTGRLRGIKK +K+D Sbjct: 1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIKKIVDKED 257
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI) HSP 1 Score: 441 bits (1134), Expect = 1.610e-154 Identity = 207/254 (81.50%), Postives = 235/254 (92.52%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 792 MGKVIRG RKG+G +FTSHTRLRKGPVKLRKLDYAERHGYIKGVVK++IHEP RGAP+AK+QFQNPY++K+DNELIVA EGMY+G FIYCGKKA LTVGNI+PV SMPEG+V ++E++ GDRG+ ARCSGDYAV+++HDE+KGT+K+RLPSGSKKTI S+CRAMVGI+AGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST RLASAGQKVGLIAARRTGRLRGI+ E Sbjct: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA) HSP 1 Score: 427 bits (1099), Expect = 3.970e-149 Identity = 196/251 (78.09%), Postives = 231/251 (92.03%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKK 783 MGKV+RGCRKG+G+VF SHTRLRKGP KLR+LD++ER GY+KG+VKEI+HEP RGAP+A+IQFQNPY+Y+KDNEL+V AEGMY+G FI+CGKKA L+VGNILP+G +PEG+V+CNVES GDRG+L + SG Y VV+T DEDKGT++IRLPSG+KKT+ + CRAMVGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHP GGGNHQHIGHPSTT R+ SAG+KVGLIAARRTGRLRG+KK Sbjct: 1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA) HSP 1 Score: 420 bits (1079), Expect = 4.400e-146 Identity = 194/251 (77.29%), Postives = 225/251 (89.64%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKK 783 MGKV++ CRKG+G+VF SHTRLRKG V++R LD+ ER GYIKG+VK+IIHEP RGAP+AK+QF N YEYKKDN L+VAAEGMYTG FI+CGKKAQL VGNILP+G +PEG+V+CNVE+ GDRG+L + SG Y VV+T DEDKGTT+IRLPSG+KKT+ + CRAMVGI+AGGGRTDKPLLKAGRAYHKYRVKRNEWP++RGVA NPVEHP GGGNHQHIGHPSTT R+ SAG+KVGLIAARRTGRLRG+KK Sbjct: 1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA) HSP 1 Score: 420 bits (1079), Expect = 7.520e-146 Identity = 194/264 (73.48%), Postives = 226/264 (85.61%), Query Frame = 1 Query: 1 WCADWLG*GSMGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 792 W D +MGKV RG RKG+G++F SHTRLR G VK R LDYAER G+ KGV+K+ +HEP RGAP+AK+QF N Y YK+DN L VA EGMYTG F+YCGKKA+LTVGNILP+G+MPEG+++CN+E++PGDRG +A+CSGDYAVVVTHDEDKGTT++RLPSGSKKT+ + CRA VGI+AGGGRTDKPLLKAGRA+HKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPSTT+R AG+K GLIAARRTGRL G K E Sbjct: 13 WATDSA---AMGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAGKKVIDE 273
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC) HSP 1 Score: 408 bits (1049), Expect = 1.560e-141 Identity = 191/255 (74.90%), Postives = 222/255 (87.06%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSEK 795 MGKVIR CRKG G +F SHT+L K PVKLRKLDYAE+HGYIKGVVKEI+HE RGAPIA++QF+N Y +K+D E VA EG+Y+G FI+ GKKA L +GN+LP+ +PEG+V+ NVE+RPGDRGS AR SG YAV+V DED+GTTKIRLPSG+KKT+ S+ R ++GIIAGGGRTDKP+LKAGRAYHKYRVKRNEWP+VRGVAMNPVEHPHGGGNHQHIGHPST KR A AG+KVGL+AARRTGRLRGIKK +EK Sbjct: 1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEK 255
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA) HSP 1 Score: 408 bits (1048), Expect = 2.140e-141 Identity = 190/254 (74.80%), Postives = 220/254 (86.61%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 792 MG+VIRG RKG G +F SH + RKG R DY ER GYIKGV+KEIIH+P RGAP+A++ F++PY+Y+ ++EL++AAEGMYTGMFIY GKKA + VGNILP+ +PEG+++CNVE+R GD+G ARCSGDYAV+VTHDEDKG TKIRLPSGSKKTI S CRAMVG++AGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHPHGGGNHQHIGHPST KR AG+KVGLIAARRTGRLRGIKKT + Sbjct: 1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDK 254
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD) HSP 1 Score: 405 bits (1041), Expect = 2.480e-140 Identity = 188/254 (74.02%), Postives = 221/254 (87.01%), Query Frame = 1 Query: 31 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 792 MG+VIRG RKG G +F SHT R+G R LDY ERHGYIKGVVKEIIH+ RGAP+A++ +++PY YK ++EL++AAEGMYTG FIY G KA +TVGNILP+ ++PEG+++CNVE+R GDRGS AR SGDYAV+VTHDEDKG TK+RLPSGSKKT+ S CRAM+G++AGGGRTDKP+LKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPST +R A +G+KVGLIAARRTGRLRGIKK + Sbjct: 1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIKKVEK 254 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352897 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14982 ID=mRNA_14982|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=927bp|location=Sequence derived from alignment at Contig_135:359209..362630- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGTGTGCAGACTGGCTAGGCTGAGGGAGCATGGGTAAGGTTATCAGGGGback to top protein sequence of jgi.p|Trimin1|352897 >Trimin1|352897|estExt_Genemark1.C_Ctg_1350040 ID=Trimin1|352897|estExt_Genemark1.C_Ctg_1350040|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHback to top mRNA from alignment at Contig_135:359209..362630- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14982 ID=mRNA_14982|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3422bp|location=Sequence derived from alignment at Contig_135:359209..362630- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_135:359209..362630- >mRNA_14982 ID=mRNA_14982|Name=jgi.p|Trimin1|352897|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_135:359209..362630- (Tribonema minus UTEX_B_3156 )back to top |