Trimin1|352868|estExt_Genemark1.C_Ctg_1340043 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352868
Unique NameTrimin1|352868|estExt_Genemark1.C_Ctg_1340043
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length207
Homology
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 5.550e-138
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 206
            MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC
Sbjct:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 206          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 6.460e-111
Identity = 168/184 (91.30%), Postives = 174/184 (94.57%), Query Frame = 0
Query:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESS 184
            MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QESF HVNDWLSEVNRYASEGTSKLLIGNKSDR DK V +  AK +A+SLGIPFLETSAK+ASNVEEAFLTMASELIRTREARAA Q ++S
Sbjct:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNS 184          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: W7TI50_9STRA (Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI50_9STRA)

HSP 1 Score: 305 bits (781), Expect = 3.640e-103
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0
Query:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAA 178
            MSKRDYD LFKLVLIGD+GVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF H+ DWL+EVNRYASEGT KLL+GNKSDR DK V+TE+AK FA  LGIPFLETSAK+ASNVEEAFLTMA ELIR REA+ A
Sbjct:    1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGA 178          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A7S3VAP6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP6_9STRA)

HSP 1 Score: 301 bits (770), Expect = 1.660e-101
Identity = 162/205 (79.02%), Postives = 171/205 (83.41%), Query Frame = 0
Query:    3 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRA-DKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 206
            K DYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQ+SF HVNDWL EVNRYASEGT KLL+GNKSDR  DK VT EQAK FA  +GIPFLETSAKSA+NVEEAFLTMASELI+ R AR     ++ G    VQL  G         CC
Sbjct:    8 KSDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQDSFDHVNDWLKEVNRYASEGTCKLLVGNKSDRTTDKVVTAEQAKEFADDIGIPFLETSAKSAANVEEAFLTMASELIKQRIARGGTAEDADGD--NVQLGGGKRAKEMMSNCC 210          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: F0YFR6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFR6_AURAN)

HSP 1 Score: 300 bits (768), Expect = 2.720e-101
Identity = 161/207 (77.78%), Postives = 179/207 (86.47%), Query Frame = 0
Query:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAE-SSGTAATVQLRPGASGGGSSGKCC 206
            MSKRDYDHLFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS ESF HV+DWL+EVNRYA+EGT KLL+GNK D  DK VTTE AK +A  LGIPFLETSAK+A+NVEEAFLTMA ELIR REA  +Q A+  +G A+ ++L  G+S    + KCC
Sbjct:    1 MSKRDYDHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVDGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVSDWLTEVNRYANEGTCKLLVGNKCDMEDKVVTTEAAKEYADGLGIPFLETSAKNATNVEEAFLTMAGELIRLREA--SQSAKPGAGGASGLKLSGGSS---RTKKCC 202          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A7S2C3M2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C3M2_9STRA)

HSP 1 Score: 298 bits (764), Expect = 1.230e-100
Identity = 149/175 (85.14%), Postives = 166/175 (94.86%), Query Frame = 0
Query:    2 SKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 176
            +KRDYDHLFKLVLIGDSGVGKSCLLLRFAD+AFT+SYISTIGVDFRFRT+K++K TVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESF HV+DWL+EVNRYASEGT KLL+GNKSDRAD AV++E+AK +A+ LGIPFLETSAK+A NVE AFLTMASELI+ R+AR
Sbjct:    8 TKRDYDHLFKLVLIGDSGVGKSCLLLRFADNAFTESYISTIGVDFRFRTIKVEKNTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFNHVSDWLTEVNRYASEGTCKLLVGNKSDRADWAVSSEEAKVYAEKLGIPFLETSAKNAENVETAFLTMASELIKIRQAR 182          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A7S1GR15_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GR15_CYCTE)

HSP 1 Score: 296 bits (759), Expect = 8.120e-100
Identity = 154/175 (88.00%), Postives = 161/175 (92.00%), Query Frame = 0
Query:    3 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 176
            +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS ESF HVNDWL EVNRYA+EGT KLL+GNKSDR ADK VT E+AK FA  LGI FLETSAKSA NVEEAFLTMA ELIR R+AR
Sbjct:   12 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRVADKVVTEEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIRQRDAR 186          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: B7FVL6_PHATC (Predicted protein n=5 Tax=Bacillariophycidae TaxID=33850 RepID=B7FVL6_PHATC)

HSP 1 Score: 295 bits (755), Expect = 2.980e-99
Identity = 152/177 (85.88%), Postives = 163/177 (92.09%), Query Frame = 0
Query:    3 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAA 178
            +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMV+DVTS +SF HVNDWL EVNRYA+EGT KLL+GNKSDR AD+ VT EQA+ FA  LGIPF+ETSAKSA NVEEAFLTMA ELIR R AR+A
Sbjct:    9 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVFDVTSTDSFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRTADRVVTEEQAREFADELGIPFIETSAKSAKNVEEAFLTMAGELIRQRAARSA 185          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A7S4JIY9_9STRA (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S4JIY9_9STRA)

HSP 1 Score: 295 bits (755), Expect = 1.130e-98
Identity = 153/176 (86.93%), Postives = 161/176 (91.48%), Query Frame = 0
Query:    2 SKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 176
            +KRDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGII+VYDVTS +SF HVNDWL EVNRYASEGT KLLIGNKSDR +DK V  E+AK FA  LGI FLETSAKSA NVEEAFLTMA ELI+ REAR
Sbjct:   45 NKRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIILVYDVTSADSFDHVNDWLKEVNRYASEGTCKLLIGNKSDRTSDKVVAAEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIKQREAR 220          
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A1Z5J904_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J904_FISSO)

HSP 1 Score: 293 bits (751), Expect = 1.210e-98
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 0
Query:    3 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSG 185
            +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+DKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMV+DVTS ESF HVNDWL EVNRYA+EGT KLL+GNKSDR AD+ VTTEQA+ FA  LGIP++ETSAKSA NVEEAFLTMA ELIR R A    + E  G
Sbjct:    9 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKLDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVFDVTSTESFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRTADRVVTTEQAQEFAAELGIPYIETSAKSAKNVEEAFLTMAGELIRQRVASGTDKDEKKG 192          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z965_9STRA5.550e-138100.00Rab1A, rab family GTPase n=1 Tax=Tribonema minus T... [more]
D7G118_ECTSI6.460e-11191.30Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
W7TI50_9STRA3.640e-10387.08Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S3VAP6_9STRA1.660e-10179.02Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
F0YFR6_AURAN2.720e-10177.78Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2C3M2_9STRA1.230e-10085.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1GR15_CYCTE8.120e-10088.00Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
B7FVL6_PHATC2.980e-9985.88Predicted protein n=5 Tax=Bacillariophycidae TaxID... [more]
A0A7S4JIY9_9STRA1.130e-9886.93Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A1Z5J904_FISSO1.210e-9882.61Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 51..73
score: 56.57
coord: 10..31
score: 58.6
coord: 33..49
score: 38.7
coord: 147..169
score: 44.83
coord: 113..126
score: 40.09
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 10..172
e-value: 7.2E-98
score: 341.1
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 15..197
e-value: 2.2E-6
score: 37.2
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 7..172
e-value: 6.5E-32
score: 122.0
NoneNo IPR availablePIRSRPIRSR006809-2PIRSR006809-2coord: 3..160
e-value: 7.0E-4
score: 16.4
NoneNo IPR availablePIRSRPIRSR006809-1PIRSR006809-1coord: 3..160
e-value: 7.0E-4
score: 16.4
NoneNo IPR availablePANTHERPTHR47977:SF6RAS-RELATED PROTEIN RABD2A-LIKEcoord: 7..193
NoneNo IPR availablePANTHERPTHR47977LD21953P-RELATEDcoord: 7..193
NoneNo IPR availablePROSITEPS51420RHOcoord: 3..175
score: 10.751999
NoneNo IPR availablePROSITEPS51419RABcoord: 5..206
score: 37.237469
NoneNo IPR availableCDDcd01869Rab1_Ypt1coord: 8..171
e-value: 1.53466E-111
score: 313.882
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 12..173
e-value: 1.6E-15
score: 67.6
IPR001806Small GTPasePFAMPF00071Rascoord: 11..169
e-value: 3.4E-62
score: 208.8
IPR001806Small GTPasePROSITEPS51421RAScoord: 1..191
score: 19.673193
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 10..164
e-value: 4.7E-34
score: 115.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..194
e-value: 6.2E-72
score: 243.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:361409..363063 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352868mRNA_12341Tribonema minus UTEX_B_3156 mRNAContig_134 361398..363063 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352868|estExt_Genemark1.C_Ctg_1340043 ID=Trimin1|352868|estExt_Genemark1.C_Ctg_1340043|Name=jgi.p|Trimin1|352868|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=207bp
MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRT
VKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHV
NDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLET
SAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGG
SSGKCC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase