mRNA_12341 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA) HSP 1 Score: 393 bits (1009), Expect = 6.270e-138 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 3 Query: 12 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 629 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC Sbjct: 1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 206
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI) HSP 1 Score: 324 bits (831), Expect = 7.280e-111 Identity = 168/184 (91.30%), Postives = 174/184 (94.57%), Query Frame = 3 Query: 12 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESS 563 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QESF HVNDWLSEVNRYASEGTSKLLIGNKSDR DK V + AK +A+SLGIPFLETSAK+ASNVEEAFLTMASELIRTREARAA Q ++S Sbjct: 1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNS 184
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: W7TI50_9STRA (Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI50_9STRA) HSP 1 Score: 305 bits (781), Expect = 4.090e-103 Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 3 Query: 12 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAA 545 MSKRDYD LFKLVLIGD+GVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF H+ DWL+EVNRYASEGT KLL+GNKSDR DK V+TE+AK FA LGIPFLETSAK+ASNVEEAFLTMA ELIR REA+ A Sbjct: 1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGA 178
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A7S3VAP6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP6_9STRA) HSP 1 Score: 301 bits (770), Expect = 1.870e-101 Identity = 162/205 (79.02%), Postives = 171/205 (83.41%), Query Frame = 3 Query: 18 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRA-DKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 629 K DYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQ+SF HVNDWL EVNRYASEGT KLL+GNKSDR DK VT EQAK FA +GIPFLETSAKSA+NVEEAFLTMASELI+ R AR ++ G VQL G CC Sbjct: 8 KSDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQDSFDHVNDWLKEVNRYASEGTCKLLVGNKSDRTTDKVVTAEQAKEFADDIGIPFLETSAKSAANVEEAFLTMASELIKQRIARGGTAEDADGD--NVQLGGGKRAKEMMSNCC 210
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: F0YFR6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFR6_AURAN) HSP 1 Score: 300 bits (768), Expect = 3.060e-101 Identity = 161/207 (77.78%), Postives = 179/207 (86.47%), Query Frame = 3 Query: 12 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAE-SSGTAATVQLRPGASGGGSSGKCC 629 MSKRDYDHLFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS ESF HV+DWL+EVNRYA+EGT KLL+GNK D DK VTTE AK +A LGIPFLETSAK+A+NVEEAFLTMA ELIR REA +Q A+ +G A+ ++L G+S + KCC Sbjct: 1 MSKRDYDHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVDGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVSDWLTEVNRYANEGTCKLLVGNKCDMEDKVVTTEAAKEYADGLGIPFLETSAKNATNVEEAFLTMAGELIRLREA--SQSAKPGAGGASGLKLSGGSS---RTKKCC 202
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A7S2C3M2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C3M2_9STRA) HSP 1 Score: 298 bits (764), Expect = 1.380e-100 Identity = 149/175 (85.14%), Postives = 166/175 (94.86%), Query Frame = 3 Query: 15 SKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 539 +KRDYDHLFKLVLIGDSGVGKSCLLLRFAD+AFT+SYISTIGVDFRFRT+K++K TVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESF HV+DWL+EVNRYASEGT KLL+GNKSDRAD AV++E+AK +A+ LGIPFLETSAK+A NVE AFLTMASELI+ R+AR Sbjct: 8 TKRDYDHLFKLVLIGDSGVGKSCLLLRFADNAFTESYISTIGVDFRFRTIKVEKNTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFNHVSDWLTEVNRYASEGTCKLLVGNKSDRADWAVSSEEAKVYAEKLGIPFLETSAKNAENVETAFLTMASELIKIRQAR 182
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A7S1GR15_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GR15_CYCTE) HSP 1 Score: 296 bits (759), Expect = 9.140e-100 Identity = 154/175 (88.00%), Postives = 161/175 (92.00%), Query Frame = 3 Query: 18 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 539 +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS ESF HVNDWL EVNRYA+EGT KLL+GNKSDR ADK VT E+AK FA LGI FLETSAKSA NVEEAFLTMA ELIR R+AR Sbjct: 12 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRVADKVVTEEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIRQRDAR 186
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: B7FVL6_PHATC (Predicted protein n=5 Tax=Bacillariophycidae TaxID=33850 RepID=B7FVL6_PHATC) HSP 1 Score: 295 bits (755), Expect = 3.350e-99 Identity = 152/177 (85.88%), Postives = 163/177 (92.09%), Query Frame = 3 Query: 18 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAA 545 +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMV+DVTS +SF HVNDWL EVNRYA+EGT KLL+GNKSDR AD+ VT EQA+ FA LGIPF+ETSAKSA NVEEAFLTMA ELIR R AR+A Sbjct: 9 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVFDVTSTDSFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRTADRVVTEEQAREFADELGIPFIETSAKSAKNVEEAFLTMAGELIRQRAARSA 185
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A7S4JIY9_9STRA (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S4JIY9_9STRA) HSP 1 Score: 295 bits (755), Expect = 1.270e-98 Identity = 153/176 (86.93%), Postives = 161/176 (91.48%), Query Frame = 3 Query: 15 SKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 539 +KRDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGII+VYDVTS +SF HVNDWL EVNRYASEGT KLLIGNKSDR +DK V E+AK FA LGI FLETSAKSA NVEEAFLTMA ELI+ REAR Sbjct: 45 NKRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIILVYDVTSADSFDHVNDWLKEVNRYASEGTCKLLIGNKSDRTSDKVVAAEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIKQREAR 220
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Match: A0A1Z5J904_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J904_FISSO) HSP 1 Score: 293 bits (751), Expect = 1.360e-98 Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 3 Query: 18 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSG 566 +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+DKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMV+DVTS ESF HVNDWL EVNRYA+EGT KLL+GNKSDR AD+ VTTEQA+ FA LGIP++ETSAKSA NVEEAFLTMA ELIR R A + E G Sbjct: 9 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKLDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVFDVTSTESFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRTADRVVTTEQAQEFAAELGIPYIETSAKSAKNVEEAFLTMAGELIRQRVASGTDKDEKKG 192 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352868 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12341 ID=mRNA_12341|Name=jgi.p|Trimin1|352868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=632bp|location=Sequence derived from alignment at Contig_134:361398..363063+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGAGGCGGAGGATGTCCAAGCGCGACTATGATCACCTGTTCAAGCTGGTGback to top protein sequence of jgi.p|Trimin1|352868 >Trimin1|352868|estExt_Genemark1.C_Ctg_1340043 ID=Trimin1|352868|estExt_Genemark1.C_Ctg_1340043|Name=jgi.p|Trimin1|352868|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=207bp MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTback to top mRNA from alignment at Contig_134:361398..363063+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12341 ID=mRNA_12341|Name=jgi.p|Trimin1|352868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1666bp|location=Sequence derived from alignment at Contig_134:361398..363063+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_134:361398..363063+ >mRNA_12341 ID=mRNA_12341|Name=jgi.p|Trimin1|352868|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=621bp|location=Sequence derived from alignment at Contig_134:361398..363063+ (Tribonema minus UTEX_B_3156 )back to top |