Trimin1|352859|estExt_Genemark1.C_Ctg_1340021 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352859
Unique NameTrimin1|352859|estExt_Genemark1.C_Ctg_1340021
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length264
Homology
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BLAST of jgi.p|Trimin1|352859 vs. uniprot
Match: A0A835ZBG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG4_9STRA)

HSP 1 Score: 412 bits (1058), Expect = 1.430e-143
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0 
Query:    1 MAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEFLPDGRFRLSGDTRATRNAAGVLHANANWGKVWYPELIAAWQGARRERRSITTEPPARFAGLALAREGRAEEALAAFRRAVKAGPRDADSHYNIGALLRSAGDEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARGEALAAMQGALRHGTPLRVVTSGD 263
            MAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEFLPDGRFRLSGDTRATRNAAGVLHANANWGKVWYPELIAAWQGARRERRSITTEPPARFAGLALAREGRAEEALAAFRRAVKAGPRDADSHYNIGALLRSAGDEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARGEALAAMQGALRHGTPLRVVTSGD
Sbjct:    1 MAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEFLPDGRFRLSGDTRATRNAAGVLHANANWGKVWYPELIAAWQGARRERRSITTEPPARFAGLALAREGRAEEALAAFRRAVKAGPRDADSHYNIGALLRSAGDEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARGEALAAMQGALRHGTPLRVVTSGD 263
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352859 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZBG4_9STRA1.430e-143100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 136..169
e-value: 130.0
score: 5.1
coord: 204..237
e-value: 21.0
score: 12.1
coord: 170..203
e-value: 0.0035
score: 26.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 170..203
score: 9.1159
NoneNo IPR availablePFAMPF13432TPR_16coord: 143..203
e-value: 2.1E-9
score: 37.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 198..254
e-value: 5.1E-6
score: 28.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 97..197
e-value: 5.6E-12
score: 47.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 142..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:130374..131614 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352859mRNA_12308Tribonema minus UTEX_B_3156 mRNAContig_134 130334..132352 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352859|estExt_Genemark1.C_Ctg_1340021 ID=Trimin1|352859|estExt_Genemark1.C_Ctg_1340021|Name=jgi.p|Trimin1|352859|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=264bp
MAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRA
MTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEFLPDGRFRLSGDTRATRN
AAGVLHANANWGKVWYPELIAAWQGARRERRSITTEPPARFAGLALAREG
RAEEALAAFRRAVKAGPRDADSHYNIGALLRSAGDEAGARAAYERALVAD
PAHANSLHNLALLVYVEGRVADAADMLRRAYAAEPTQARGEALAAMQGAL
RHGTPLRVVTSGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf