mRNA_12308 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352859
Unique NamemRNA_12308
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352859 vs. uniprot
Match: A0A835ZBG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG4_9STRA)

HSP 1 Score: 411 bits (1057), Expect = 1.480e-142
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1 
Query:  115 MAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEFLPDGRFRLSGDTRATRNAAGVLHANANWGKVWYPELIAAWQGARRERRSITTEPPARFAGLALAREGRAEEALAAFRRAVKAGPRDADSHYNIGALLRSAGDEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARGEALAAMQGALRHGTPLRVVTSGD 903
            MAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEFLPDGRFRLSGDTRATRNAAGVLHANANWGKVWYPELIAAWQGARRERRSITTEPPARFAGLALAREGRAEEALAAFRRAVKAGPRDADSHYNIGALLRSAGDEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARGEALAAMQGALRHGTPLRVVTSGD
Sbjct:    1 MAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEFLPDGRFRLSGDTRATRNAAGVLHANANWGKVWYPELIAAWQGARRERRSITTEPPARFAGLALAREGRAEEALAAFRRAVKAGPRDADSHYNIGALLRSAGDEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARGEALAAMQGALRHGTPLRVVTSGD 263
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BLAST of jgi.p|Trimin1|352859 vs. uniprot
Match: A0A6C0IQ45_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IQ45_9ZZZZ)

HSP 1 Score: 57.8 bits (138), Expect = 3.540e-6
Identity = 37/110 (33.64%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    1 DAYDVLLSPDLKGVPAALARASAPVVFSAEKSCYPEPGMAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFLEHPGIVTLDYDQDMFV 330
            DAYDV+ +     V         P+VF  E  C P+P   E Y  + R  +  +LN+G F GRA  +    +E    D      DQR  T+ F E+P +++LDYD  +F+
Sbjct:   78 DAYDVIYTGTRDVVIERFVGMKIPIVFGCETECNPDPDQREKY--VHRDVKFPYLNSGMFIGRAWAIRKCMKEYVYDDDHD---DQRFWTQKFFEYPEMISLDYDNALFL 182
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BLAST of jgi.p|Trimin1|352859 vs. uniprot
Match: A0A839AC03_9HYPH (Uncharacterized protein n=1 Tax=Stappia albiluteola TaxID=2758565 RepID=A0A839AC03_9HYPH)

HSP 1 Score: 55.5 bits (132), Expect = 3.600e-5
Identity = 39/136 (28.68%), Postives = 64/136 (47.06%), Query Frame = 1 
Query:    1 DAYDVLLSPDLKGVPAALARASAPVVFSAEKSCYPEPGMAELYP-----PMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEF---LPDGRFR 384
            D YDV+    ++ +          ++FS E++C    G+   +P     P  +G   RFLN+GS+ G+A  LL +F ++      PT  DQ  + +Y + H   + LD +Q +F   A  +   E    + DGR R
Sbjct:   64 DGYDVVFLAGVEEIERKFKAFGREILFSTEQNCNVNGGLRVRFPTWLKYPKAKGPY-RFLNSGSYVGKAGRLLELFSQLRI---KPTDSDQTVLNRYLVAHSPDIALDCEQQIFTCTAGRTGLEEQDYRVEDGRLR 195
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BLAST of jgi.p|Trimin1|352859 vs. uniprot
Match: UPI001BC8BFFA (multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3-like n=1 Tax=Taeniopygia guttata TaxID=59729 RepID=UPI001BC8BFFA)

HSP 1 Score: 56.2 bits (134), Expect = 4.340e-5
Identity = 58/189 (30.69%), Postives = 86/189 (45.50%), Query Frame = 1 
Query:    1 DAYDVLLSPDLKGVPAALARASAPVVFSAEKSCYPEPGMAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRAMTKYFL-----EHPGIVTLDYDQDMFVTL--AMSSSPVEFLPDG---RFRLSGDTRATRNAAG----VLHANANWGKV-WYPELIAAWQGARRERRSITTE 522
            D+YDV+ +   + + A    A + V+F+AE  C+P+ G+A LYPP P G +  FLN+G   G A  L  + E     D      DQ   T+ +L     E  G+  LD+   +F  L  A+    + F PDG   R  LSG      +  G     L++ AN+  + W P      +  RR+ R    E
Sbjct:  222 DSYDVVFAGGPRELLAKFGAAGSGVLFAAEGFCWPQGGLAPLYPPAPPGGKP-FLNSGGIVGYAPALWALVERWHFRD---DDDDQLFYTQLYLNSELRERLGLA-LDHHSRIFQNLNGALEELSIRFEPDGNRVRNDLSGTWPVVIHGNGPTKVALNSLANYVPLGWRPGGCGDCERGRRDLRDTPPE 405
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352859 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZBG4_9STRA1.480e-142100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0IQ45_9ZZZZ3.540e-633.64Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A839AC03_9HYPH3.600e-528.68Uncharacterized protein n=1 Tax=Stappia albiluteol... [more]
UPI001BC8BFFA4.340e-530.69multifunctional procollagen lysine hydroxylase and... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:130334..132352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352859|estExt_Genemark1.C_Ctg_1340021
Hectar predicted targeting categoryother localisation
TranscriptId353181
TrackFilteredModels1
ProteinId352859
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352859gene_12308Tribonema minus UTEX_B_3156 geneContig_134 130334..132352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352859Trimin1|352859|estExt_Genemark1.C_Ctg_1340021Tribonema minus UTEX_B_3156 polypeptideContig_134 130374..131614 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12308_3exon_12308_3Tribonema minus UTEX_B_3156 exonContig_134 130334..130961 -
exon_12308_2exon_12308_2Tribonema minus UTEX_B_3156 exonContig_134 131411..131690 -
exon_12308_1exon_12308_1Tribonema minus UTEX_B_3156 exonContig_134 132315..132352 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12308UTR3_12308Tribonema minus UTEX_B_3156 three_prime_UTRContig_134 130334..130373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12308CDS_12308Tribonema minus UTEX_B_3156 CDSContig_134 131411..131614 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12308UTR5_12308Tribonema minus UTEX_B_3156 five_prime_UTRContig_134 132315..132352 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12308 ID=mRNA_12308|Name=jgi.p|Trimin1|352859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=946bp|location=Sequence derived from alignment at Contig_134:130334..132352- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGCCTACGACGTGTTGTTGTCTCCGGACTTGAAAGGTGTTCCGGCGGC
GCTCGCTCGCGCATCAGCGCCAGTTGTCTTTTCCGCAGAAAAGTCCTGCT
ATCCAGAGCCTGGCATGGCAGAGCTGTATCCGCCCATGCCCCGCGGGGCG
CAGGGGCGCTTCTTGAATGCGGGCAGCTTTGCGGGACGCGCCGCAGACTT
GCTGTACGTGTTTGAGGAAGTGGCCGCATATGATGCCATGCCGACCACGT
GTGACCAGCGCGCAATGACCAAGTACTTCCTGGAGCACCCCGGCATTGTC
ACCTTGGACTACGATCAGGACATGTTCGTCACGCTCGCCATGAGCAGCTC
GCCCGTGGAGTTCCTCCCCGACGGGCGCTTCCGCCTCAGCGGCGACACGC
GCGCCACGCGCAACGCCGCCGGTGTCCTGCACGCCAACGCCAACTGGGGC
AAGGTCTGGTACCCGGAGCTCATCGCGGCGTGGCAGGGCGCGCGGCGCGA
GCGCAGGAGCATCACCACCGAGCCGCCCGCGCGATTCGCGGGGCTCGCGC
TGGCGCGGGAGGGGCGCGCAGAGGAGGCGCTGGCGGCGTTCCGGCGCGCG
GTCAAGGCAGGCCCGCGCGACGCCGATTCGCACTACAACATCGGAGCGCT
GCTGCGGAGCGCGGGAGACGAGGCGGGGGCGCGCGCCGCGTACGAGAGGG
CGCTGGTTGCGGACCCCGCGCACGCCAACTCGCTGCACAATCTGGCGCTG
CTGGTGTATGTTGAGGGGCGCGTGGCGGATGCTGCTGATATGCTGCGGAG
GGCGTACGCTGCGGAACCCACGCAGGCGCGCGGGGAGGCGCTCGCGGCGA
TGCAGGGGGCGCTGCGGCACGGCACGCCGCTGCGGGTCGTGACGAGCGGG
GACTAGATGTGTGTGTGTCTGTGTGTGTCAATGCAAGACAAGTGAG
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protein sequence of jgi.p|Trimin1|352859

>Trimin1|352859|estExt_Genemark1.C_Ctg_1340021 ID=Trimin1|352859|estExt_Genemark1.C_Ctg_1340021|Name=jgi.p|Trimin1|352859|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=264bp
MAELYPPMPRGAQGRFLNAGSFAGRAADLLYVFEEVAAYDAMPTTCDQRA
MTKYFLEHPGIVTLDYDQDMFVTLAMSSSPVEFLPDGRFRLSGDTRATRN
AAGVLHANANWGKVWYPELIAAWQGARRERRSITTEPPARFAGLALAREG
RAEEALAAFRRAVKAGPRDADSHYNIGALLRSAGDEAGARAAYERALVAD
PAHANSLHNLALLVYVEGRVADAADMLRRAYAAEPTQARGEALAAMQGAL
RHGTPLRVVTSGD*
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mRNA from alignment at Contig_134:130334..132352-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12308 ID=mRNA_12308|Name=jgi.p|Trimin1|352859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2019bp|location=Sequence derived from alignment at Contig_134:130334..132352- (Tribonema minus UTEX_B_3156 )
GATGCCTACGACGTGTTGTTGTCTCCGGACTTGAAAGGGTGAGACAGCGC
AGTGGGAAGCACATGTTTTCTTCATTGTCTCAGTATTACGACAGCAAAAG
GTATTGTGTACTGCTGTGTACTAAGTACTGTGTATTGCGCTTCAACGTGT
ACTGCACTCTGCGCTGAATTGTGTGGACAAAACATTGAATGCAGTGGCAG
CTTTTCTAGGTCCGCGCAGACATTTCCAAAGTGATCATGTCCAGTTAGTG
GATGATTTGCTTGCCATGCATGCATGCAGCACTAGCGAGTGGAGAGTCAA
CTTTTGAGTACAGTAACGGCTGCCAATTGCCGATGTCTGAGCTGTTGTCT
GGCTGTGTGTTCATGCTATATGGCTGGCTTTTCCTCGCATAAAATTCACG
CACGCATTTACATATGTGCTCCTGTCGTCACTCTTTCAGGGATAGCTTCA
TATCATGCACTGACAGAGCTGCTCATTTACCTCAGCCATGTACACCCAAC
ATCCACCACTTGCCGGGTACATGGCAGCACCGCATGGCACGTGATACACC
TGTACACCCAAGTTGCCCACCCAATTGAGCTCACTCAGTCACTCACTCAC
GCACTCACTGTCCCTGACCTTCTGCCCCCCCCACCTGCTGCACTGCCATC
GCTACCAACCAGTGTTCCGGCGGCGCTCGCTCGCGCATCAGCGCCAGTTG
TCTTTTCCGCAGAAAAGTCCTGCTATCCAGAGCCTGGCATGGCAGAGCTG
TATCCGCCCATGCCCCGCGGGGCGCAGGGGCGCTTCTTGAATGCGGGCAG
CTTTGCGGGACGCGCCGCAGACTTGCTGTACGTGTTTGAGGAAGTGGCCG
CATATGATGCCATGCCGACCACGTGTGACCAGCGCGCAATGACCAAGTAC
TTCCTGGAGCACCCCGGCATTGTCACCTTGGACTACGATCAGGTGTGTAT
GGTGGTGCAGGGTGGTGACACTCCCTCGCCTCAAATCCGAGCATCTGGTA
CACATGTTGAAGGTGAAGTCACCTGTGACCTGTAGGCATGGAGTGCCAAA
GTACTGTAGAGTCTGCCAATCCGGTGTTTGCCATGTTCAAGTGTGTGGCG
CTTGCTGCCCATGAGAATGCAACGGGACATTTACTTGTGACGCCATCAAC
GTGCCCCCCCTCTTGTCTGCTATTGCTGCATGTGAAGGTTAAGTTTGTTG
CTTTTCCACCAGATCATCCAGCGCCTGATCACTTGTTATATGCATGACAC
CCCTGCACACGGATATCTGCTTCGCACCATGGGTTCTGTCACAGCGCACC
ATCATGACTCAACACTGTATGGCGTGTACACGAGCGTCGTCTAGCGCACG
CACTCACACCAGCCACCTTGCCAAAACTCCATCACCTGCAGGACATGTTC
GTCACGCTCGCCATGAGCAGCTCGCCCGTGGAGTTCCTCCCCGACGGGCG
CTTCCGCCTCAGCGGCGACACGCGCGCCACGCGCAACGCCGCCGGTGTCC
TGCACGCCAACGCCAACTGGGGCAAGGTCTGGTACCCGGAGCTCATCGCG
GCGTGGCAGGGCGCGCGGCGCGAGCGCAGGAGCATCACCACCGAGCCGCC
CGCGCGATTCGCGGGGCTCGCGCTGGCGCGGGAGGGGCGCGCAGAGGAGG
CGCTGGCGGCGTTCCGGCGCGCGGTCAAGGCAGGCCCGCGCGACGCCGAT
TCGCACTACAACATCGGAGCGCTGCTGCGGAGCGCGGGAGACGAGGCGGG
GGCGCGCGCCGCGTACGAGAGGGCGCTGGTTGCGGACCCCGCGCACGCCA
ACTCGCTGCACAATCTGGCGCTGCTGGTGTATGTTGAGGGGCGCGTGGCG
GATGCTGCTGATATGCTGCGGAGGGCGTACGCTGCGGAACCCACGCAGGC
GCGCGGGGAGGCGCTCGCGGCGATGCAGGGGGCGCTGCGGCACGGCACGC
CGCTGCGGGTCGTGACGAGCGGGGACTAGATGTGTGTGTGTCTGTGTGTG
TCAATGCAAGACAAGTGAG
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Coding sequence (CDS) from alignment at Contig_134:130334..132352-

>mRNA_12308 ID=mRNA_12308|Name=jgi.p|Trimin1|352859|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=792bp|location=Sequence derived from alignment at Contig_134:130334..132352- (Tribonema minus UTEX_B_3156 )
ATGGCAGAGCTGTATCCGCCCATGCCCCGCGGGGCGCAGGGGCGCTTCTT
GAATGCGGGCAGCTTTGCGGGACGCGCCGCAGACTTGCTGTACGTGTTTG
AGGAAGTGGCCGCATATGATGCCATGCCGACCACGTGTGACCAGCGCGCA
ATGACCAAGTACTTCCTGGAGCACCCCGGCATTGTCACCTTGGACTACGA
TCAGGACATGTTCGTCACGCTCGCCATGAGCAGCTCGCCCGTGGAGTTCC
TCCCCGACGGGCGCTTCCGCCTCAGCGGCGACACGCGCGCCACGCGCAAC
GCCGCCGGTGTCCTGCACGCCAACGCCAACTGGGGCAAGGTCTGGTACCC
GGAGCTCATCGCGGCGTGGCAGGGCGCGCGGCGCGAGCGCAGGAGCATCA
CCACCGAGCCGCCCGCGCGATTCGCGGGGCTCGCGCTGGCGCGGGAGGGG
CGCGCAGAGGAGGCGCTGGCGGCGTTCCGGCGCGCGGTCAAGGCAGGCCC
GCGCGACGCCGATTCGCACTACAACATCGGAGCGCTGCTGCGGAGCGCGG
GAGACGAGGCGGGGGCGCGCGCCGCGTACGAGAGGGCGCTGGTTGCGGAC
CCCGCGCACGCCAACTCGCTGCACAATCTGGCGCTGCTGGTGTATGTTGA
GGGGCGCGTGGCGGATGCTGCTGATATGCTGCGGAGGGCGTACGCTGCGG
AACCCACGCAGGCGCGCGGGGAGGCGCTCGCGGCGATGCAGGGGGCGCTG
CGGCACGGCACGCCGCTGCGGGTCGTGACGAGCGGGGACTAG
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