Trimin1|352774|estExt_Genemark1.C_Ctg_1310022 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352774
Unique NameTrimin1|352774|estExt_Genemark1.C_Ctg_1310022
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length225
Homology
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BLAST of jgi.p|Trimin1|352774 vs. uniprot
Match: A0A835ZD71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD71_9STRA)

HSP 1 Score: 384 bits (985), Expect = 9.920e-134
Identity = 220/224 (98.21%), Postives = 220/224 (98.21%), Query Frame = 0 
Query:    1 MKGEGLKRRFTKRDGSNLIEAVGLDADTLGEEVLGHWVRQAEDKFESLCFEKGVQRKLAALDASADAAXXXXXXPQLTAALRPQQQQLAQTQSSNGEMLPLPGVSAREAVRAAIMEVKLTERQRLAQQGFHACVPPLRRSPAALTTATAAAHAETSKWRRSAAFSTARSGQFVAAAEAQAQAEVVACSALLDGAQRRLEDVAGVAADLQAANEAAAXXXXQQQR 224
            MKGEGLKRRFTKRDGSNLIEAVGLDADTLGEEVLGHWVRQAEDKFESLCFEKGVQRKLAALDASADAAXXXXXXPQLTAALRPQQQQLAQTQSSNGEMLPLPGVSAREAVRAAIMEVKLTERQRLAQQGFHACVPPLRRSPAALTTATAAAHAETSKWRRSAAFSTARSGQFVAAAEAQAQAEVVACSALLDGAQRRLEDVAGVAADLQAANEAAA    QQQR
Sbjct:    1 MKGEGLKRRFTKRDGSNLIEAVGLDADTLGEEVLGHWVRQAEDKFESLCFEKGVQRKLAALDASADAAXXXXXXPQLTAALRPQQQQLAQTQSSNGEMLPLPGVSAREAVRAAIMEVKLTERQRLAQQGFHACVPPLRRSPAALTTATAAAHAETSKWRRSAAFSTARSGQFVAAAEAQAQAEVVACSALLDGAQRRLEDVAGVAADLQAANEAAAAAEQQQQR 224
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352774 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZD71_9STRA9.920e-13498.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 201..221
IPR007128Nuclear MIS12/MIND complex subunit PMF1/Nnf1PFAMPF03980Nnf1coord: 32..127
e-value: 3.7E-6
score: 27.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_131contigContig_131:161834..164526 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352774mRNA_13616Tribonema minus UTEX_B_3156 mRNAContig_131 161834..164641 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352774|estExt_Genemark1.C_Ctg_1310022 ID=Trimin1|352774|estExt_Genemark1.C_Ctg_1310022|Name=jgi.p|Trimin1|352774|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp
MKGEGLKRRFTKRDGSNLIEAVGLDADTLGEEVLGHWVRQAEDKFESLCF
EKGVQRKLAALDASADAAAAAAPAPQLTAALRPQQQQLAQTQSSNGEMLP
LPGVSAREAVRAAIMEVKLTERQRLAQQGFHACVPPLRRSPAALTTATAA
AHAETSKWRRSAAFSTARSGQFVAAAEAQAQAEVVACSALLDGAQRRLED
VAGVAADLQAANEAAAAAEQQQQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007128PMF1/Nnf1