Trimin1|352685|estExt_Genemark1.C_Ctg_1280025 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352685
Unique Name	Trimin1\|352685\|estExt_Genemark1.C_Ctg_1280025
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	412

Homology

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BLAST of jgi.p|Trimin1|352685 vs. uniprot
Match: A0A835ZFV9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFV9_9STRA)

HSP 1 Score: 493 bits (1269), Expect = 6.690e-171
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0

Query:    1 MSAGGRKQAAGVRQSNGPDGSVGFGAGRGKPASPSPPPIESGNGEIGGLQGASQSSLSGGAVPLKIVSALELAAVGQEREQLQXXXXXXXXXXQFMGSVEGYGSPGDFRRGSTGSERKAVVDAGLWLKDGKVKARRRGDNPSDPDFQRNYEVYRPSFAPYRETAASQAQAGPLPIPPAQGQLPQWGPDPQQQQYLMQGQQGGLSPIQMQQLAAQLHPQHAAQQQQVYYATGMQQMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGPTAQQXXXXXXXXXXXXXXXXXXXXXVRQETDYYAIXXXXXXXXXXXXXXXXXXXMGYAMHSAMALNLQQHAHMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTTRMHNASYNENFPALS 411
            MSAGGRKQAAGVRQSNGPDGSVGFGAGRGKPASPSPPPIESGNGEIGGLQGASQSSLSGGAVPLKIVSALELAAVGQEREQLQXXXXXXXXXXQFMGSVEGYGSPGDFRRGSTGSERKAVVDAGLWLKDGKVKARRRGDNPSDPDFQRNYEVYRPSFAPYRETAASQAQAGPLPIPPAQGQLPQWGPDPQQQQYLMQGQQGGLSPIQMQQLAAQLHPQHAAQQQQVYYATGMQQMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGPTAQQXXXXXXXXXXXXXXXXXXXXXVRQETDYYAIXXXXXXXXXXXXXXXXXXXMGYAMHSAMALNLQQHAHMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTTRMHNASYNENFPALS
Sbjct:    1 MSAGGRKQAAGVRQSNGPDGSVGFGAGRGKPASPSPPPIESGNGEIGGLQGASQSSLSGGAVPLKIVSALELAAVGQEREQLQXXXXXXXXXXQFMGSVEGYGSPGDFRRGSTGSERKAVVDAGLWLKDGKVKARRRGDNPSDPDFQRNYEVYRPSFAPYRETAASQAQAGPLPIPPAQGQLPQWGPDPQQQQYLMQGQQGGLSPIQMQQLAAQLHPQHAAQQQQVYYATGMQQMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGPTAQQXXXXXXXXXXXXXXXXXXXXXVRQETDYYAIXXXXXXXXXXXXXXXXXXXMGYAMHSAMALNLQQHAHMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTTRMHNASYNENFPALS 411

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BLAST of jgi.p|Trimin1|352685 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.110e-6
Identity = 58/159 (36.48%), Postives = 68/159 (42.77%), Query Frame = 0

Query:    7 KQAAGVRQSNGPDGSVGFGAGRGKPASPSPPPIESGNGEIGGLQGASQSSLSGGAVP-LKIVSALELAAVGQEREQLQXXXXXXXXXXQFMGSVEGYGSPGDFRRGSTGSERKAVVDAGLWLKDGKVKARRRGDNPSDPDFQRNYEVYRPSFAPYRETA 164
            KQA G   S GPDG++GFG+GRGKP                              VP          AA G+E E+               G+ EG  S G       GS R AV +AG W K  +   R R    SDPDF RNY+ YRPSFAPYR+ A
Sbjct:  504 KQAGGAVTSQGPDGTMGFGSGRGKP------------------------------VPGXXXXXXXXXAAAGREGER-------GVREEGGAGAAEGPVSXGAXXXXXRGSRRPAV-NAGEW-KGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLA 623

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352685 vs. uniprot

BLAST of jgi.p|Trimin1|352685 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZFV9_9STRA	6.690e-171	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5KC01_9PHAE	3.110e-6	36.48	SUZ domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 311..331
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 343..411
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..411
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..151

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_128	contig	Contig_128:229641..237045 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352685	mRNA_15302	Tribonema minus UTEX_B_3156	mRNA	Contig_128 229546..237210 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352685|estExt_Genemark1.C_Ctg_1280025 ID=Trimin1|352685|estExt_Genemark1.C_Ctg_1280025|Name=jgi.p|Trimin1|352685|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=412bp
MSAGGRKQAAGVRQSNGPDGSVGFGAGRGKPASPSPPPIESGNGEIGGLQ
GASQSSLSGGAVPLKIVSALELAAVGQEREQLQRQQQQQQQQQQFMGSVE
GYGSPGDFRRGSTGSERKAVVDAGLWLKDGKVKARRRGDNPSDPDFQRNY
EVYRPSFAPYRETAASQAQAGPLPIPPAQGQLPQWGPDPQQQQYLMQGQQ
GGLSPIQMQQLAAQLHPQHAAQQQQVYYATGMQQMAQQTAPYMQQQNGAA
ASALHAAAGMQQMAQQPAPYMQQYGPTAQQQQQQQQQQIMLQQQQQQSQT
PVRQETDYYAIQLAQQQAAQLAQQQQQQQQMGYAMHSAMALNLQQHAHMQ
QQQQQQLRQSPPPANSQQSYGGTPQQQQLMLQQQQAQAQQQQQHTTRMHN
ASYNENFPALS*