Trimin1|352609|estExt_Genemark1.C_Ctg_1250039 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352609
Unique NameTrimin1|352609|estExt_Genemark1.C_Ctg_1250039
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length234
Homology
BLAST of jgi.p|Trimin1|352609 vs. uniprot
Match: A0A835ZHJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHJ1_9STRA)

HSP 1 Score: 413 bits (1061), Expect = 5.150e-145
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MPSTSPVAVMVASLTSLLPVAVLLLLSLRQAAALLPSPSPLPASRPHQQQPTRGAITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHARXXXXXXXXXXXXXXXXAHS 233
            MPSTSPVAVMVASLTSLLPVAVLLLLSLRQAAALLPSPSPLPASRPHQQQPTRGAITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHARXXXXXXXXXXXXXXXXAHS
Sbjct:    1 MPSTSPVAVMVASLTSLLPVAVLLLLSLRQAAALLPSPSPLPASRPHQQQPTRGAITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHARXXXXXXXXXXXXXXXXAHS 233          
BLAST of jgi.p|Trimin1|352609 vs. uniprot
Match: A0A835YQW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.240e-55
Identity = 89/129 (68.99%), Postives = 105/129 (81.40%), Query Frame = 0
Query:   86 FEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHAR 214
            ++ RVERLHLSARKAIKH H + A  MY +++T W S + ++D ARTYLLMALN QRLG Y  AR VFMRG+AHCHSPKL L+WALFESKHGRMDAALALA+ +V+LD +LAPVLRWKMF +AS   AR
Sbjct:   80 YQLRVERLHLSARKAIKHKHADWASRMYTYVLTAWTSELDSQDTARTYLLMALNEQRLGQYDAARLVFMRGVAHCHSPKLLLSWALFESKHGRMDAALALAQHSVELDRSLAPVLRWKMFADASAAKAR 208          
BLAST of jgi.p|Trimin1|352609 vs. uniprot
Match: K8YSD5_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSD5_NANGC)

HSP 1 Score: 67.4 bits (163), Expect = 6.870e-10
Identity = 46/152 (30.26%), Postives = 67/152 (44.08%), Query Frame = 0
Query:   55 AITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHS-PKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMF 205
            A  +++S  G  ++ YR +  S          + R   LH+SARKAIK    E+A   Y+  + +W+        A TY L AL  QR  DY +AR +F    A   +  +L  A                    AV+ D +L PVL+WKM+
Sbjct:   64 ASNVVISDSGLMIKNYRPLPPSDN-----DPLDVRCALLHISARKAIKSGKMEIARRFYELFLFKWKGYRTENAIAHTYFLWALLEQRAEDYSKARRLFQEATARYPTHARLFQAXXXXXXXXXXXXXXXXXIASAVEHDKSLEPVLKWKMW 210          
BLAST of jgi.p|Trimin1|352609 vs. uniprot
Match: B7FP56_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP56_PHATC)

HSP 1 Score: 63.2 bits (152), Expect = 2.520e-8
Identity = 50/138 (36.23%), Postives = 68/138 (49.28%), Query Frame = 0
Query:   90 VERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAAR---TYLLMALNAQRLGDYGRARFVFMRGMA----------HCH-SPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHA 213
            + + H  A + IK   P  A  +Y  +I    +     D A+   T LL+AL  QRLGD  + R VF+               C  S K+  A+ALFE K G    +L +  +AV+LD +LAPVLRWK F +A E  A
Sbjct:  106 LAKKHYFALRKIKDGKPGHAETIYRRVIDELSADDEHCDHAKLAVTTLLLALLLQRLGDIKQTRSVFLNFFRIAVLESAKDEECACSAKVLQAYALFEMKQGHSLKSLDIVCKAVKLDPSLAPVLRWKQFRDALERRA 243          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352609 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZHJ1_9STRA5.150e-145100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQW7_9STRA1.240e-5568.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YSD5_NANGC6.870e-1030.26Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
B7FP56_PHATC2.520e-836.23Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 76..232
e-value: 8.6E-6
score: 27.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 104..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:353648..354349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352609mRNA_14171Tribonema minus UTEX_B_3156 mRNAContig_125 353648..354611 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352609|estExt_Genemark1.C_Ctg_1250039 ID=Trimin1|352609|estExt_Genemark1.C_Ctg_1250039|Name=jgi.p|Trimin1|352609|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
MPSTSPVAVMVASLTSLLPVAVLLLLSLRQAAALLPSPSPLPASRPHQQQ
PTRGAITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKA
IKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRAR
FVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVL
RWKMFVEASEEHARRRRRRGALTTAAAAAAAHS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf