mRNA_14171 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352609
Unique NamemRNA_14171
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352609 vs. uniprot
Match: A0A835ZHJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHJ1_9STRA)

HSP 1 Score: 412 bits (1060), Expect = 2.220e-143
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 
Query:    1 MPSTSPVAVMVASLTSLLPVAVLLLLSLRQAAALLPSPSPLPASRPHQQQPTRGAITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHAR 642
            MPSTSPVAVMVASLTSLLPVAVLLLLSLRQAAALLPSPSPLPASRPHQQQPTRGAITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHAR
Sbjct:    1 MPSTSPVAVMVASLTSLLPVAVLLLLSLRQAAALLPSPSPLPASRPHQQQPTRGAITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHAR 214
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BLAST of jgi.p|Trimin1|352609 vs. uniprot
Match: A0A835YQW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 2.080e-54
Identity = 89/129 (68.99%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:  256 FEARVERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRARFVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHAR 642
            ++ RVERLHLSARKAIKH H + A  MY +++T W S + ++D ARTYLLMALN QRLG Y  AR VFMRG+AHCHSPKL L+WALFESKHGRMDAALALA+ +V+LD +LAPVLRWKMF +AS   AR
Sbjct:   80 YQLRVERLHLSARKAIKHKHADWASRMYTYVLTAWTSELDSQDTARTYLLMALNEQRLGQYDAARLVFMRGVAHCHSPKLLLSWALFESKHGRMDAALALAQHSVELDRSLAPVLRWKMFADASAAKAR 208
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BLAST of jgi.p|Trimin1|352609 vs. uniprot
Match: B7FP56_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP56_PHATC)

HSP 1 Score: 63.2 bits (152), Expect = 6.910e-8
Identity = 50/138 (36.23%), Postives = 68/138 (49.28%), Query Frame = 1 
Query:  268 VERLHLSARKAIKHSHPELAHCMYDFIITRWRSRMGARDAAR---TYLLMALNAQRLGDYGRARFVFMRGMA----------HCH-SPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVLRWKMFVEASEEHA 639
            + + H  A + IK   P  A  +Y  +I    +     D A+   T LL+AL  QRLGD  + R VF+               C  S K+  A+ALFE K G    +L +  +AV+LD +LAPVLRWK F +A E  A
Sbjct:  106 LAKKHYFALRKIKDGKPGHAETIYRRVIDELSADDEHCDHAKLAVTTLLLALLLQRLGDIKQTRSVFLNFFRIAVLESAKDEECACSAKVLQAYALFEMKQGHSLKSLDIVCKAVKLDPSLAPVLRWKQFRDALERRA 243
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352609 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZHJ1_9STRA2.220e-143100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQW7_9STRA2.080e-5468.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7FP56_PHATC6.910e-836.23Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:353648..354611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352609|estExt_Genemark1.C_Ctg_1250039
Max annot lvl2836|Bacillariophyta
EggNOG OGs2EIJ4@1|root,2SNYG@2759|Eukaryota,2XCSM@2836|Bacillariophyta
Evalue4.13e-09
Seed ortholog2850.Phatr53967
Hectar predicted targeting categorysignal peptide
TranscriptId352931
TrackFilteredModels1
ProteinId352609
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352609gene_14171Tribonema minus UTEX_B_3156 geneContig_125 353648..354611 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14171_1exon_14171_1Tribonema minus UTEX_B_3156 exonContig_125 353648..354611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14171CDS_14171Tribonema minus UTEX_B_3156 CDSContig_125 353648..354349 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14171UTR3_14171Tribonema minus UTEX_B_3156 three_prime_UTRContig_125 354350..354611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352609Trimin1|352609|estExt_Genemark1.C_Ctg_1250039Tribonema minus UTEX_B_3156 polypeptideContig_125 353648..354349 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14171 ID=mRNA_14171|Name=jgi.p|Trimin1|352609|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=964bp|location=Sequence derived from alignment at Contig_125:353648..354611+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCCACCAGCCCTGTTGCGGTGATGGTCGCCAGCCTGACCTCCCT
GCTGCCTGTGGCAGTCCTGCTGCTGCTGTCCTTGCGGCAAGCAGCAGCGC
TGCTGCCCTCACCATCCCCACTACCAGCGAGCAGGCCGCACCAGCAGCAA
CCCACCAGGGGCGCCATCACCATGCTCGTCAGCGGAGAGGGGCCGGAGCT
GAGGCGCTACCGCAGCATCGACATGTCGCCTCAGCGCGCCCCCACCCCCA
CGTCCTTCGAGGCGCGCGTGGAGCGCCTCCACCTCAGCGCGCGCAAGGCC
ATCAAGCACAGCCACCCCGAGCTGGCGCACTGCATGTACGACTTCATCAT
CACGCGCTGGCGCTCGCGCATGGGCGCGCGCGACGCGGCGCGCACGTACC
TGCTCATGGCGCTCAACGCGCAGCGCCTCGGCGACTACGGGCGCGCGCGC
TTCGTCTTCATGCGCGGCATGGCGCACTGCCACTCGCCCAAGCTGTCGCT
TGCGTGGGCGCTGTTCGAGTCCAAGCACGGCCGCATGGACGCTGCGCTCG
CGCTTGCGCGCCGCGCCGTGCAGCTCGACGGCACGCTCGCGCCAGTGCTC
AGGTGGAAGATGTTCGTCGAGGCGAGCGAGGAGCACGCGCGGCGGCGGCG
GCGGCGCGGCGCGCTGACCACTGCGGCAGCAGCCGCCGCCGCGCATTCAT
AGAATCGTCGATGCCGCGGCACTGGTTGAGATTGCCGCGCGCAGGCGCCG
TGGTTGCATAGTGCGCGCTCCCGTCCCGGGGTGCCCGGTAGAACTTCAAG
TAGTTGTGTATAAAGTGTTTCGCGATGGTGTCGTTGTCTCGTTCAGTGCA
GCAGTGAGGGGACGGGTGGAGTTAGTGTGTCGGTAGCAGCCAGCGGTTCT
TGGCCAGGTGTTCAGCAGAAGTTCCCTGTTCACGTTGTTTTGTGAATAAA
CCATGTATGTTGCA
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protein sequence of jgi.p|Trimin1|352609

>Trimin1|352609|estExt_Genemark1.C_Ctg_1250039 ID=Trimin1|352609|estExt_Genemark1.C_Ctg_1250039|Name=jgi.p|Trimin1|352609|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
MPSTSPVAVMVASLTSLLPVAVLLLLSLRQAAALLPSPSPLPASRPHQQQ
PTRGAITMLVSGEGPELRRYRSIDMSPQRAPTPTSFEARVERLHLSARKA
IKHSHPELAHCMYDFIITRWRSRMGARDAARTYLLMALNAQRLGDYGRAR
FVFMRGMAHCHSPKLSLAWALFESKHGRMDAALALARRAVQLDGTLAPVL
RWKMFVEASEEHARRRRRRGALTTAAAAAAAHS*
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mRNA from alignment at Contig_125:353648..354611+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14171 ID=mRNA_14171|Name=jgi.p|Trimin1|352609|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=964bp|location=Sequence derived from alignment at Contig_125:353648..354611+ (Tribonema minus UTEX_B_3156 )
ATGCCTTCCACCAGCCCTGTTGCGGTGATGGTCGCCAGCCTGACCTCCCT
GCTGCCTGTGGCAGTCCTGCTGCTGCTGTCCTTGCGGCAAGCAGCAGCGC
TGCTGCCCTCACCATCCCCACTACCAGCGAGCAGGCCGCACCAGCAGCAA
CCCACCAGGGGCGCCATCACCATGCTCGTCAGCGGAGAGGGGCCGGAGCT
GAGGCGCTACCGCAGCATCGACATGTCGCCTCAGCGCGCCCCCACCCCCA
CGTCCTTCGAGGCGCGCGTGGAGCGCCTCCACCTCAGCGCGCGCAAGGCC
ATCAAGCACAGCCACCCCGAGCTGGCGCACTGCATGTACGACTTCATCAT
CACGCGCTGGCGCTCGCGCATGGGCGCGCGCGACGCGGCGCGCACGTACC
TGCTCATGGCGCTCAACGCGCAGCGCCTCGGCGACTACGGGCGCGCGCGC
TTCGTCTTCATGCGCGGCATGGCGCACTGCCACTCGCCCAAGCTGTCGCT
TGCGTGGGCGCTGTTCGAGTCCAAGCACGGCCGCATGGACGCTGCGCTCG
CGCTTGCGCGCCGCGCCGTGCAGCTCGACGGCACGCTCGCGCCAGTGCTC
AGGTGGAAGATGTTCGTCGAGGCGAGCGAGGAGCACGCGCGGCGGCGGCG
GCGGCGCGGCGCGCTGACCACTGCGGCAGCAGCCGCCGCCGCGCATTCAT
AGAATCGTCGATGCCGCGGCACTGGTTGAGATTGCCGCGCGCAGGCGCCG
TGGTTGCATAGTGCGCGCTCCCGTCCCGGGGTGCCCGGTAGAACTTCAAG
TAGTTGTGTATAAAGTGTTTCGCGATGGTGTCGTTGTCTCGTTCAGTGCA
GCAGTGAGGGGACGGGTGGAGTTAGTGTGTCGGTAGCAGCCAGCGGTTCT
TGGCCAGGTGTTCAGCAGAAGTTCCCTGTTCACGTTGTTTTGTGAATAAA
CCATGTATGTTGCA
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Coding sequence (CDS) from alignment at Contig_125:353648..354611+

>mRNA_14171 ID=mRNA_14171|Name=jgi.p|Trimin1|352609|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_125:353648..354611+ (Tribonema minus UTEX_B_3156 )
ATGCCTTCCACCAGCCCTGTTGCGGTGATGGTCGCCAGCCTGACCTCCCT
GCTGCCTGTGGCAGTCCTGCTGCTGCTGTCCTTGCGGCAAGCAGCAGCGC
TGCTGCCCTCACCATCCCCACTACCAGCGAGCAGGCCGCACCAGCAGCAA
CCCACCAGGGGCGCCATCACCATGCTCGTCAGCGGAGAGGGGCCGGAGCT
GAGGCGCTACCGCAGCATCGACATGTCGCCTCAGCGCGCCCCCACCCCCA
CGTCCTTCGAGGCGCGCGTGGAGCGCCTCCACCTCAGCGCGCGCAAGGCC
ATCAAGCACAGCCACCCCGAGCTGGCGCACTGCATGTACGACTTCATCAT
CACGCGCTGGCGCTCGCGCATGGGCGCGCGCGACGCGGCGCGCACGTACC
TGCTCATGGCGCTCAACGCGCAGCGCCTCGGCGACTACGGGCGCGCGCGC
TTCGTCTTCATGCGCGGCATGGCGCACTGCCACTCGCCCAAGCTGTCGCT
TGCGTGGGCGCTGTTCGAGTCCAAGCACGGCCGCATGGACGCTGCGCTCG
CGCTTGCGCGCCGCGCCGTGCAGCTCGACGGCACGCTCGCGCCAGTGCTC
AGGTGGAAGATGTTCGTCGAGGCGAGCGAGGAGCACGCGCGGCGGCGGCG
GCGGCGCGGCGCGCTGACCACTGCGGCAGCAGCCGCCGCCGCGCATTCAT
AG
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