Trimin1|352448|estExt_Genemark1.C_Ctg_1190036 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352448
Unique NameTrimin1|352448|estExt_Genemark1.C_Ctg_1190036
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length473
Homology
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A835ZDT5_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA)

HSP 1 Score: 810 bits (2093), Expect = 2.910e-294
Identity = 472/472 (100.00%), Postives = 472/472 (100.00%), Query Frame = 0
Query:    1 MGGRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVPVPAPRAADPRSVRAAALTGRRRAGLARAKAVPPRPSPTKGGAAXXXXXXXAAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAAAPAAARPGVRRAAAXXXXXXXXXXXXXXXXXXXXXXXXAGAGVKRGGSRSKAQSGAGCRQ 472
            MGGRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVPVPAPRAADPRSVRAAALTGRRRAGLARAKAVPPRPSPTKGGAAXXXXXXXAAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAAAPAAARPGVRRAAAXXXXXXXXXXXXXXXXXXXXXXXXAGAGVKRGGSRSKAQSGAGCRQ
Sbjct:    1 MGGRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVPVPAPRAADPRSVRAAALTGRRRAGLARAKAVPPRPSPTKGGAAXXXXXXXAAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAAAPAAARPGVRRAAAXXXXXXXXXXXXXXXXXXXXXXXXAGAGVKRGGSRSKAQSGAGCRQ 472          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.020e-66
Identity = 128/275 (46.55%), Postives = 174/275 (63.27%), Query Frame = 0
Query:   39 VMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVD---------GKELSTHIA----------PARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRG-----EKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQV 289
            VMRL++RIARSG +SRREAER+++ G V              ++NGA   +PA+NV   D V+V+         G +  T +             ++W VHK R ELV R D +GR  V +R+  + L D L PVGRLD+ TEGLLLLT+DGDLARK+E P+  + R Y VRV+G++T EKLR M+ GC I+GV YKGM V ++ G     E  N WL + C EGKN QIR++C++L LTVNRL RT +GPF LGK+ +GGVA V + + F++++
Sbjct:  112 VMRLSRRIARSGIASRREAERMVEAGVV--------------MVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRL 372          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A7C5SFA6_9PROT (Pseudouridine synthase n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SFA6_9PROT)

HSP 1 Score: 206 bits (524), Expect = 5.120e-60
Identity = 119/239 (49.79%), Postives = 150/239 (62.76%), Query Frame = 0
Query:   41 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEV 279
            RLA+RIAR+G  SRR AE LI+EGRV              ++NG    +PAVNV+  D V VDG  L +  AP R+W  HK  G +V+  DEKGR  V ER+   G    +  VGRLD  +EGLLLLT+DG LAR+LE P  G  R YRVR FG VT + L  ++ G  I+GVHY  +V  +D  E  N W+     EGKN +IRR+C+HL L VNRLIRTA+GPF+LG++  G +AEV
Sbjct:    7 RLARRIARAGVCSRRAAEELIREGRV--------------MVNGETVTTPAVNVTADDVVVVDGAPLPSP-APVRLWRYHKPCGLIVSERDEKGRPTVFERLP--GDLGRVISVGRLDLNSEGLLLLTNDGALARRLELPATGWTRRYRVRAFGCVTQDALAALRDGLTIDGVHYGKIVAKLDTAEGANVWMTFALKEGKNREIRRICEHLGLKVNRLIRTAYGPFQLGRLKRGALAEV 228          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: W4FXM7_9STRA (S4 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXM7_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.640e-57
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 0
Query:   40 MRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHN-TWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEV 279
            MRLAKR+A +G SSRREAE++I EGRV              ++NGA     AVNV+  D V VD K L+   +  RVW  HK  GELV  SD +GR  +L+R+KA+G+   L  VGRLDF TEGLL+LT+DGD AR LEHP   ++R YRV V+G V   KL  ++RG +++GV Y+ M V I+   K   TWL V   EGKN +IR    H+ L + RLIR  +GP++L  +  G V EV
Sbjct:   72 MRLAKRLAMAGVSSRREAEKIILEGRV--------------VVNGAKVNQVAVNVTFDDVVTVDHKTLAARPSKRRVWIAHKLAGELVTSSDPRGRPTILQRIKAMGVESHLMAVGRLDFNTEGLLVLTNDGDYARYLEHPKHAVQRVYRVLVWGQVLPSKLDELRRGALVDGVKYRPMAVKIESTTKDKETWLQVKLTEGKNREIRNAMAHVRLVLKRLIRVEYGPYRLADLNKGNVLEV 298          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A537NY95_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NY95_9PROT)

HSP 1 Score: 199 bits (507), Expect = 3.610e-57
Identity = 115/253 (45.45%), Postives = 155/253 (61.26%), Query Frame = 0
Query:   41 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVP---LHEQFLKQVN 290
            R+AK IAR+G  SRR+AERLI EGRVK              +NG V +SPA+NV   D +R+DG+ L      +R+W  HK  G + +  D +GRR V + ++       +  +GRLD  TEGLLLLT+DG+LAR LE P  G  R YRVR +G      L  ++ G  IEGVHY  +   ID+ +  N WL +   EGKN +++++C+HL L VNRLIRTAFGPF+LG +  GG+AEVP   L EQ  ++V+
Sbjct:   22 RIAKAIARAGLCSRRDAERLIGEGRVK--------------LNGKVLVSPAMNVKPGDDIRIDGQPLPQK-EESRLWRYHKPAGLVTSHKDPEGRRTVFDALREQ--LPRVISIGRLDINTEGLLLLTNDGELARLLELPATGWVRRYRVRAYGHPDPAALEKLKGGITIEGVHYGPIEAKIDKAQGDNAWLNIAIREGKNREVKKICEHLGLQVNRLIRTAFGPFQLGDLERGGIAEVPAKVLAEQLGRKVS 257          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A2W2BBS9_9HYPH (Pseudouridine synthase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BBS9_9HYPH)

HSP 1 Score: 197 bits (502), Expect = 1.220e-56
Identity = 116/259 (44.79%), Postives = 159/259 (61.39%), Query Frame = 0
Query:   41 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVP-------LHEQFLKQVNTA 292
            R+AK IAR+G  SRR+AERLI EGRVK              +NG V  S A NV+  D + VDG+ L +  A  ++W  HK  G +V+ +D +GR  V E+++       +  +GRLD  TEGLLLLT+DG+LAR LE P  G  R+YRVR FG V    L  +++G  +EGV Y  +   I+R +  NTWL +   EGKN +++R+C+HL L VNRLIRTAFGPF+LG++  GG+ EVP       + E+F K+ + A
Sbjct:    8 RIAKVIARAGVCSRRDAERLIGEGRVK--------------MNGKVLTSAATNVTAKDVILVDGQPLPSKEA-TKLWRYHKPGGLVVSNNDPQGRPTVFEKLREQ--LPRVVSIGRLDINTEGLLLLTNDGELARFLELPATGWTRKYRVRAFGHVNEASLTKLEKGVEVEGVRYGPIEAKIERVQGDNTWLTIAIKEGKNREVKRICEHLGLQVNRLIRTAFGPFQLGELPRGGIEEVPTRAMKSSIGEKFFKKEDDA 249          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A6G6WY02_9HYPH (Pseudouridine synthase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6WY02_9HYPH)

HSP 1 Score: 195 bits (496), Expect = 1.610e-55
Identity = 112/252 (44.44%), Postives = 153/252 (60.71%), Query Frame = 0
Query:   41 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVP---LHEQFLKQV 289
            R+AK IAR+G  SRR+AERLI +GRVK              +NG V  SPA+NV  +D VRVDG+ L      +R+W  HK  G + +  D +GRR V + ++       +  +GRLD  TEGLLLLT+DG+LAR LE P  G  R YRVR +G      L  +  G  +EG+HY  +   +D+ +  N WL +   EGKN +++++C+HL LTVNRLIR AFGPF+LG +  GG++EVP   L EQ  ++V
Sbjct:   15 RIAKAIARAGLCSRRDAERLIADGRVK--------------LNGKVLSSPAINVKPSDDVRVDGQPLPQK-EESRLWRYHKPAGLVTSHKDPEGRRTVFDALREQ--LPRVISIGRLDINTEGLLLLTNDGELARLLELPATGWVRRYRVRAYGKPDPAALARLAGGVTLEGIHYGPIEATLDKAQGDNAWLNIAIREGKNREVKKICEHLGLTVNRLIRIAFGPFQLGDLERGGISEVPAKVLAEQLGRKV 249          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A521DN63_9RHOB (Pseudouridine synthase n=1 Tax=Thalassobius litoralis TaxID=1010611 RepID=A0A521DN63_9RHOB)

HSP 1 Score: 197 bits (502), Expect = 1.710e-55
Identity = 114/239 (47.70%), Postives = 153/239 (64.02%), Query Frame = 0
Query:   41 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEV 279
            R+AK IAR+G++SRREAERLI+EGRV               +NG    SPA+NV+  D + VDGK L     PARVW  HK  G +    DE+GR  + +++   GL   +  VGRLD  +EGLLLLT+DG++ RKLE P  G  R+YRVRV G V+ EKL  +++G   +GV+Y  M+V++DR +  N WL V   EGKN +IRR  + +  TVNRLIRT++GPF+LG++  G V EV
Sbjct:   10 RIAKIIARAGRASRREAERLIEEGRVT--------------VNGKQITSPALNVTARDTITVDGKPLEA-AEPARVWLYHKPAGLVTTNRDEQGRATIFDKLPD-GLPRVMS-VGRLDLNSEGLLLLTNDGEVKRKLELPATGWLRKYRVRVNGRVSEEKLEPLRKGITHDGVNYLPMIVSLDRQQGANAWLTVGLREGKNREIRRAMEAIGFTVNRLIRTSYGPFQLGQLKPGEVEEV 231          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A1T4SUE8_9HYPH (Pseudouridine synthase n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4SUE8_9HYPH)

HSP 1 Score: 195 bits (496), Expect = 2.100e-55
Identity = 118/245 (48.16%), Postives = 150/245 (61.22%), Query Frame = 0
Query:   38 EVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLH 282
            E  R+AKR+AR+G  SRR+AER I  GRVK              ++G V  +PA  V+ A R+ VDGK L T   P R+W  HK  GELV   D +GRR + E +   G+   +  VGRLDFM+EGLLLLT+DG LARKLE P     R YR RV G+V  E+L  + +G  IEGV Y  +  ++DR ++ N WL +   EGKN ++RRV  HL+L V RLIR AFGPF LG++  G V EVP H
Sbjct:    3 EPERIAKRLARAGLCSRRDAERWIAAGRVK--------------VDGKVLDTPAFVVTDASRIEVDGKPLPTADRP-RLWLYHKPPGELVTARDPQGRRTIFESLPK-GMPRVVT-VGRLDFMSEGLLLLTNDGGLARKLELPANAWTRRYRARVHGAVDEERLAELAKGITIEGVRYGAIRASLDRQQRSNAWLDIALTEGKNREVRRVLGHLDLPVVRLIRVAFGPFHLGQLERGVVEEVPPH 230          
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A485L9R2_9STRA (Aste57867_18304 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9R2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.810e-55
Identity = 107/240 (44.58%), Postives = 146/240 (60.83%), Query Frame = 0
Query:   40 MRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEV 279
            MRLAKR+A +G SSRR+AE++I EGRV              L+NGA   + A NV+  D + VD K LS      RVW  HK  GELV   D +GR  +++R+K +G+   L   GRLDF TEGLLLLT+DGD AR+LEHP   + R YRV V G V   K+  +QRG +++G+ Y+ M V I+  +  ++WL +   EGKN +IR+   H+ L V RL+R  +GP++L  +  G V EV
Sbjct:   64 MRLAKRLAMAGVSSRRDAEKIILEGRV--------------LVNGAPTTNVATNVTMRDLISVDEKPLSARPTKRRVWMAHKLAGELVTTHDPQGRPTIMDRIKRMGIQSHLM-AGRLDFNTEGLLLLTNDGDYARQLEHPKYEVTRVYRVLVRGQVLPSKIEELQRGALVDGIKYRPMQVKIESTKDKDSWLQIKLTEGKNREIRKAMAHVRLIVKRLVRVEYGPYRLADLTKGHVLEV 288          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDT5_9STRA2.910e-294100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
D8LDE8_ECTSI1.020e-6646.55RNA pseudouridylate synthase domain-containing pro... [more]
A0A7C5SFA6_9PROT5.120e-6049.79Pseudouridine synthase n=1 Tax=Thermopetrobacter s... [more]
W4FXM7_9STRA1.640e-5747.72S4 domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A537NY95_9PROT3.610e-5745.45Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]
A0A2W2BBS9_9HYPH1.220e-5644.79Pseudouridine synthase n=1 Tax=Aestuariivirga lito... [more]
A0A6G6WY02_9HYPH1.610e-5544.44Pseudouridine synthase n=2 Tax=Hyphomicrobiales Ta... [more]
A0A521DN63_9RHOB1.710e-5547.70Pseudouridine synthase n=1 Tax=Thalassobius litora... [more]
A0A1T4SUE8_9HYPH2.100e-5548.16Pseudouridine synthase n=1 Tax=Enhydrobacter aeros... [more]
A0A485L9R2_9STRA2.810e-5544.58Aste57867_18304 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 40..115
e-value: 0.0038
score: 26.4
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 40..67
e-value: 1.6E-5
score: 24.5
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 40..111
e-value: 6.8279E-8
score: 47.6294
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 116..250
e-value: 1.8E-14
score: 54.1
IPR020094Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalGENE3D3.30.70.580coord: 108..183
e-value: 1.4E-18
score: 68.0
IPR042092Pseudouridine synthase, RsuA/RluB/E/F, catalytic domainGENE3D3.30.70.1560coord: 184..269
e-value: 1.8E-16
score: 62.6
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 36..107
e-value: 7.1E-14
score: 52.9
IPR000748Pseudouridine synthase, RsuA/RluB/E/FTIGRFAMTIGR00093TIGR00093coord: 120..276
e-value: 4.5E-38
score: 128.5
NoneNo IPR availablePIRSRPIRSR606225-1PIRSR606225-1coord: 149..241
e-value: 0.0093
score: 13.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..345
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 396..472
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 40..283
NoneNo IPR availablePANTHERPTHR21600:SF2RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Ecoord: 40..283
NoneNo IPR availablePROSITEPS50889S4coord: 40..122
score: 10.590015
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 28..158
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved sitePROSITEPS01149PSI_RSUcoord: 155..169
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 115..284

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:233268..237742 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352448mRNA_10627Tribonema minus UTEX_B_3156 mRNAContig_119 233268..237742 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352448|estExt_Genemark1.C_Ctg_1190036 ID=Trimin1|352448|estExt_Genemark1.C_Ctg_1190036|Name=jgi.p|Trimin1|352448|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=473bp
MGGRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSG
KSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRV
RVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDA
LKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEK
LRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQH
LNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVPVP
APRAADPRSVRAAALTGRRRAGLARAKAVPPRPSPTKGGAAAGATAQGAA
AKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKAR
DARQRRRAPAAAAPAAARPGVRRAAAAPARPGSRRAASAARGGGVRRAAT
AGAGVKRGGSRSKAQSGAGCRQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR006145PsdUridine_synth_RsuA/RluA
IPR020094TruA/RsuA/RluB/E/F_N
IPR042092PsdUridine_s_RsuA/RluB/E/F_cat
IPR036986S4_RNA-bd_sf
IPR000748PsdUridine_synth_RsuA/RluB/E/F
IPR018496PsdUridine_synth_RsuA/RluB_CS
IPR020103PsdUridine_synth_cat_dom_sf