mRNA_10627 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352448
Unique NamemRNA_10627
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A835ZDT5_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA)

HSP 1 Score: 810 bits (2093), Expect = 2.910e-294
Identity = 472/472 (100.00%), Postives = 472/472 (100.00%), Query Frame = 1 
Query:    1 MGGRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVPVPAPRAADPRSVRAAALTGRRRAGLARAKAVPPRPSPTKGGAAXXXXXXXAAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAAAPAAARPGVRRAAAXXXXXXXXXXXXXXXXXXXXXXXXAGAGVKRGGSRSKAQSGAGCRQ 1416
            MGGRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVPVPAPRAADPRSVRAAALTGRRRAGLARAKAVPPRPSPTKGGAAXXXXXXXAAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAAAPAAARPGVRRAAAXXXXXXXXXXXXXXXXXXXXXXXXAGAGVKRGGSRSKAQSGAGCRQ
Sbjct:    1 MGGRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVPVPAPRAADPRSVRAAALTGRRRAGLARAKAVPPRPSPTKGGAAXXXXXXXAAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAAAPAAARPGVRRAAAXXXXXXXXXXXXXXXXXXXXXXXXAGAGVKRGGSRSKAQSGAGCRQ 472
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.020e-66
Identity = 128/275 (46.55%), Postives = 174/275 (63.27%), Query Frame = 1 
Query:  115 VMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVD---------GKELSTHIA----------PARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRG-----EKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQV 867
            VMRL++RIARSG +SRREAER+++ G V              ++NGA   +PA+NV   D V+V+         G +  T +             ++W VHK R ELV R D +GR  V +R+  + L D L PVGRLD+ TEGLLLLT+DGDLARK+E P+  + R Y VRV+G++T EKLR M+ GC I+GV YKGM V ++ G     E  N WL + C EGKN QIR++C++L LTVNRL RT +GPF LGK+ +GGVA V + + F++++
Sbjct:  112 VMRLSRRIARSGIASRREAERMVEAGVV--------------MVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRL 372
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A7C5SFA6_9PROT (Pseudouridine synthase n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SFA6_9PROT)

HSP 1 Score: 206 bits (524), Expect = 5.120e-60
Identity = 119/239 (49.79%), Postives = 150/239 (62.76%), Query Frame = 1 
Query:  121 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEV 837
            RLA+RIAR+G  SRR AE LI+EGRV              ++NG    +PAVNV+  D V VDG  L +  AP R+W  HK  G +V+  DEKGR  V ER+   G    +  VGRLD  +EGLLLLT+DG LAR+LE P  G  R YRVR FG VT + L  ++ G  I+GVHY  +V  +D  E  N W+     EGKN +IRR+C+HL L VNRLIRTA+GPF+LG++  G +AEV
Sbjct:    7 RLARRIARAGVCSRRAAEELIREGRV--------------MVNGETVTTPAVNVTADDVVVVDGAPLPSP-APVRLWRYHKPCGLIVSERDEKGRPTVFERLP--GDLGRVISVGRLDLNSEGLLLLTNDGALARRLELPATGWTRRYRVRAFGCVTQDALAALRDGLTIDGVHYGKIVAKLDTAEGANVWMTFALKEGKNREIRRICEHLGLKVNRLIRTAYGPFQLGRLKRGALAEV 228
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: W4FXM7_9STRA (S4 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXM7_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.640e-57
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 1 
Query:  118 MRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHN-TWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEV 837
            MRLAKR+A +G SSRREAE++I EGRV              ++NGA     AVNV+  D V VD K L+   +  RVW  HK  GELV  SD +GR  +L+R+KA+G+   L  VGRLDF TEGLL+LT+DGD AR LEHP   ++R YRV V+G V   KL  ++RG +++GV Y+ M V I+   K   TWL V   EGKN +IR    H+ L + RLIR  +GP++L  +  G V EV
Sbjct:   72 MRLAKRLAMAGVSSRREAEKIILEGRV--------------VVNGAKVNQVAVNVTFDDVVTVDHKTLAARPSKRRVWIAHKLAGELVTSSDPRGRPTILQRIKAMGVESHLMAVGRLDFNTEGLLVLTNDGDYARYLEHPKHAVQRVYRVLVWGQVLPSKLDELRRGALVDGVKYRPMAVKIESTTKDKETWLQVKLTEGKNREIRNAMAHVRLVLKRLIRVEYGPYRLADLNKGNVLEV 298
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A537NY95_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NY95_9PROT)

HSP 1 Score: 199 bits (507), Expect = 3.610e-57
Identity = 115/253 (45.45%), Postives = 155/253 (61.26%), Query Frame = 1 
Query:  121 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVP---LHEQFLKQVN 870
            R+AK IAR+G  SRR+AERLI EGRVK              +NG V +SPA+NV   D +R+DG+ L      +R+W  HK  G + +  D +GRR V + ++       +  +GRLD  TEGLLLLT+DG+LAR LE P  G  R YRVR +G      L  ++ G  IEGVHY  +   ID+ +  N WL +   EGKN +++++C+HL L VNRLIRTAFGPF+LG +  GG+AEVP   L EQ  ++V+
Sbjct:   22 RIAKAIARAGLCSRRDAERLIGEGRVK--------------LNGKVLVSPAMNVKPGDDIRIDGQPLPQK-EESRLWRYHKPAGLVTSHKDPEGRRTVFDALREQ--LPRVISIGRLDINTEGLLLLTNDGELARLLELPATGWVRRYRVRAYGHPDPAALEKLKGGITIEGVHYGPIEAKIDKAQGDNAWLNIAIREGKNREVKKICEHLGLQVNRLIRTAFGPFQLGDLERGGIAEVPAKVLAEQLGRKVS 257
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A2W2BBS9_9HYPH (Pseudouridine synthase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BBS9_9HYPH)

HSP 1 Score: 197 bits (502), Expect = 1.220e-56
Identity = 116/259 (44.79%), Postives = 159/259 (61.39%), Query Frame = 1 
Query:  121 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVP-------LHEQFLKQVNTA 876
            R+AK IAR+G  SRR+AERLI EGRVK              +NG V  S A NV+  D + VDG+ L +  A  ++W  HK  G +V+ +D +GR  V E+++       +  +GRLD  TEGLLLLT+DG+LAR LE P  G  R+YRVR FG V    L  +++G  +EGV Y  +   I+R +  NTWL +   EGKN +++R+C+HL L VNRLIRTAFGPF+LG++  GG+ EVP       + E+F K+ + A
Sbjct:    8 RIAKVIARAGVCSRRDAERLIGEGRVK--------------MNGKVLTSAATNVTAKDVILVDGQPLPSKEA-TKLWRYHKPGGLVVSNNDPQGRPTVFEKLREQ--LPRVVSIGRLDINTEGLLLLTNDGELARFLELPATGWTRKYRVRAFGHVNEASLTKLEKGVEVEGVRYGPIEAKIERVQGDNTWLTIAIKEGKNREVKRICEHLGLQVNRLIRTAFGPFQLGELPRGGIEEVPTRAMKSSIGEKFFKKEDDA 249
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A6G6WY02_9HYPH (Pseudouridine synthase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6WY02_9HYPH)

HSP 1 Score: 195 bits (496), Expect = 1.610e-55
Identity = 112/252 (44.44%), Postives = 153/252 (60.71%), Query Frame = 1 
Query:  121 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVP---LHEQFLKQV 867
            R+AK IAR+G  SRR+AERLI +GRVK              +NG V  SPA+NV  +D VRVDG+ L      +R+W  HK  G + +  D +GRR V + ++       +  +GRLD  TEGLLLLT+DG+LAR LE P  G  R YRVR +G      L  +  G  +EG+HY  +   +D+ +  N WL +   EGKN +++++C+HL LTVNRLIR AFGPF+LG +  GG++EVP   L EQ  ++V
Sbjct:   15 RIAKAIARAGLCSRRDAERLIADGRVK--------------LNGKVLSSPAINVKPSDDVRVDGQPLPQK-EESRLWRYHKPAGLVTSHKDPEGRRTVFDALREQ--LPRVISIGRLDINTEGLLLLTNDGELARLLELPATGWVRRYRVRAYGKPDPAALARLAGGVTLEGIHYGPIEATLDKAQGDNAWLNIAIREGKNREVKKICEHLGLTVNRLIRIAFGPFQLGDLERGGISEVPAKVLAEQLGRKV 249
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A521DN63_9RHOB (Pseudouridine synthase n=1 Tax=Thalassobius litoralis TaxID=1010611 RepID=A0A521DN63_9RHOB)

HSP 1 Score: 197 bits (502), Expect = 1.710e-55
Identity = 114/239 (47.70%), Postives = 153/239 (64.02%), Query Frame = 1 
Query:  121 RLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEV 837
            R+AK IAR+G++SRREAERLI+EGRV               +NG    SPA+NV+  D + VDGK L     PARVW  HK  G +    DE+GR  + +++   GL   +  VGRLD  +EGLLLLT+DG++ RKLE P  G  R+YRVRV G V+ EKL  +++G   +GV+Y  M+V++DR +  N WL V   EGKN +IRR  + +  TVNRLIRT++GPF+LG++  G V EV
Sbjct:   10 RIAKIIARAGRASRREAERLIEEGRVT--------------VNGKQITSPALNVTARDTITVDGKPLEA-AEPARVWLYHKPAGLVTTNRDEQGRATIFDKLPD-GLPRVMS-VGRLDLNSEGLLLLTNDGEVKRKLELPATGWLRKYRVRVNGRVSEEKLEPLRKGITHDGVNYLPMIVSLDRQQGANAWLTVGLREGKNREIRRAMEAIGFTVNRLIRTSYGPFQLGQLKPGEVEEV 231
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A1T4SUE8_9HYPH (Pseudouridine synthase n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4SUE8_9HYPH)

HSP 1 Score: 195 bits (496), Expect = 2.100e-55
Identity = 118/245 (48.16%), Postives = 150/245 (61.22%), Query Frame = 1 
Query:  112 EVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLH 846
            E  R+AKR+AR+G  SRR+AER I  GRVK              ++G V  +PA  V+ A R+ VDGK L T   P R+W  HK  GELV   D +GRR + E +   G+   +  VGRLDFM+EGLLLLT+DG LARKLE P     R YR RV G+V  E+L  + +G  IEGV Y  +  ++DR ++ N WL +   EGKN ++RRV  HL+L V RLIR AFGPF LG++  G V EVP H
Sbjct:    3 EPERIAKRLARAGLCSRRDAERWIAAGRVK--------------VDGKVLDTPAFVVTDASRIEVDGKPLPTADRP-RLWLYHKPPGELVTARDPQGRRTIFESLPK-GMPRVVT-VGRLDFMSEGLLLLTNDGGLARKLELPANAWTRRYRARVHGAVDEERLAELAKGITIEGVRYGAIRASLDRQQRSNAWLDIALTEGKNREVRRVLGHLDLPVVRLIRVAFGPFHLGQLERGVVEEVPPH 230
[Close]
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Match: A0A485L9R2_9STRA (Aste57867_18304 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9R2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.810e-55
Identity = 107/240 (44.58%), Postives = 146/240 (60.83%), Query Frame = 1 
Query:  118 MRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEV 837
            MRLAKR+A +G SSRR+AE++I EGRV              L+NGA   + A NV+  D + VD K LS      RVW  HK  GELV   D +GR  +++R+K +G+   L   GRLDF TEGLLLLT+DGD AR+LEHP   + R YRV V G V   K+  +QRG +++G+ Y+ M V I+  +  ++WL +   EGKN +IR+   H+ L V RL+R  +GP++L  +  G V EV
Sbjct:   64 MRLAKRLAMAGVSSRRDAEKIILEGRV--------------LVNGAPTTNVATNVTMRDLISVDEKPLSARPTKRRVWMAHKLAGELVTTHDPQGRPTIMDRIKRMGIQSHLM-AGRLDFNTEGLLLLTNDGDYARQLEHPKYEVTRVYRVLVRGQVLPSKIEELQRGALVDGIKYRPMQVKIESTKDKDSWLQIKLTEGKNREIRKAMAHVRLIVKRLVRVEYGPYRLADLTKGHVLEV 288
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352448 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDT5_9STRA2.910e-294100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
D8LDE8_ECTSI1.020e-6646.55RNA pseudouridylate synthase domain-containing pro... [more]
A0A7C5SFA6_9PROT5.120e-6049.79Pseudouridine synthase n=1 Tax=Thermopetrobacter s... [more]
W4FXM7_9STRA1.640e-5747.72S4 domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A537NY95_9PROT3.610e-5745.45Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]
A0A2W2BBS9_9HYPH1.220e-5644.79Pseudouridine synthase n=1 Tax=Aestuariivirga lito... [more]
A0A6G6WY02_9HYPH1.610e-5544.44Pseudouridine synthase n=2 Tax=Hyphomicrobiales Ta... [more]
A0A521DN63_9RHOB1.710e-5547.70Pseudouridine synthase n=1 Tax=Thalassobius litora... [more]
A0A1T4SUE8_9HYPH2.100e-5548.16Pseudouridine synthase n=1 Tax=Enhydrobacter aeros... [more]
A0A485L9R2_9STRA2.810e-5544.58Aste57867_18304 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:233268..237742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352448|estExt_Genemark1.C_Ctg_1190036
BRITEko00000,ko01000,ko03009
KEGG koko:K06178
EC5.4.99.22
Preferred namerluB
DescriptionS4 RNA-binding domain
COG categoryJ
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,2TQP2@28211|Alphaproteobacteria,4BP8I@82117|unclassified Alphaproteobacteria
Evalue5.33e-56
Seed ortholog488538.SAR116_1139
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom
Ec32 orthologEc-15_000880.1
TranscriptId352770
TrackFilteredModels1
ProteinId352448
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352448gene_10627Tribonema minus UTEX_B_3156 geneContig_119 233268..237742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352448Trimin1|352448|estExt_Genemark1.C_Ctg_1190036Tribonema minus UTEX_B_3156 polypeptideContig_119 233268..237742 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10627_1exon_10627_1Tribonema minus UTEX_B_3156 exonContig_119 233268..233297 +
exon_10627_2exon_10627_2Tribonema minus UTEX_B_3156 exonContig_119 233928..234098 +
exon_10627_3exon_10627_3Tribonema minus UTEX_B_3156 exonContig_119 234741..234782 +
exon_10627_4exon_10627_4Tribonema minus UTEX_B_3156 exonContig_119 234924..235080 +
exon_10627_5exon_10627_5Tribonema minus UTEX_B_3156 exonContig_119 235422..235588 +
exon_10627_6exon_10627_6Tribonema minus UTEX_B_3156 exonContig_119 236052..236204 +
exon_10627_7exon_10627_7Tribonema minus UTEX_B_3156 exonContig_119 236643..236786 +
exon_10627_8exon_10627_8Tribonema minus UTEX_B_3156 exonContig_119 237188..237742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10627CDS_10627Tribonema minus UTEX_B_3156 CDSContig_119 233268..233297 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10627 ID=mRNA_10627|Name=jgi.p|Trimin1|352448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1419bp|location=Sequence derived from alignment at Contig_119:233268..237742+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGGACGCGCCTCAAAAGTGCTGGAGGAGGGAGTGGTGAACGGTGG
CAACAGCGGGGAGGAGCACGCCGAGCTGCAGCCGCAGCGACAGCGCACGC
GCAAGCAGCACGAGGTGATGCGTCTCGCCAAGAGGATTGCCAGGTCCGGC
AAAAGCAGCAGGCGAGAGGCGGAGCGGCTCATACAGGAGGGCAGAGTGAA
GCCGCGGCGCTACCTCTACCACCTGCAGCTTCTGCTGTCGCTCATCAACG
GCGCGGTCGCGCTGTCGCCCGCCGTCAACGTGAGCACCGCGGACCGCGTG
CGCGTGGACGGCAAGGAGCTCAGCACGCACATTGCGCCGGCGCGCGTGTG
GGCGGTGCACAAGGCGCGCGGCGAGCTCGTCGCGCGCAGCGACGAGAAGG
GTCGGCGGTGCGTGCTGGAGCGCGTGAAGGCGGTGGGGCTCAGCGACGCG
CTGAAGCCCGTGGGCAGGCTGGATTTCATGACGGAGGGGCTGCTGCTGCT
CACTGACGACGGGGACTTGGCTCGCAAGCTCGAACACCCCACCGTGGGAC
TGCGAAGGGAGTACAGGGTGCGCGTGTTCGGCAGCGTGACGGCGGAGAAG
CTGCGCACCATGCAGCGCGGCTGCGTCATCGAAGGCGTGCACTACAAGGG
CATGGTTGTCAACATCGACAGGGGAGAGAAGCACAACACGTGGCTCGTGG
TGCACTGCGTGGAGGGCAAGAACAACCAGATCCGCCGTGTCTGCCAGCAC
TTGAATTTGACAGTCAACAGACTTATCCGGACCGCTTTCGGGCCGTTCAA
ACTGGGGAAAATGGCCTCTGGTGGGGTGGCAGAAGTGCCGTTGCATGAAC
AGTTTCTTAAACAGGTCAACACCGCCATGGAGACGGGCGTGCCCGTCCCA
GCGCCGCGCGCCGCCGACCCGCGCAGCGTGCGCGCCGCCGCCCTGACCGG
CCGCCGCCGCGCTGGGCTCGCGCGCGCCAAGGCAGTGCCGCCGCGGCCGA
GCCCCACGAAGGGGGGCGCGGCGGCGGGGGCAACGGCGCAGGGGGCGGCG
GCGAAGTGGGGCGTGCGCGTGAAGCGCGGCCGCGGCGGCGGCGTGACGGT
GCGCGCGCCCAAGGCGGACGCCGAGGAGCCCGTGCGCGAGGCGCGCAAGC
GCAAGAAGGCCAACAAGGTGCTCGCGTGGAAGCTGCGCGCGAAGGCGAGG
GACGCGCGGCAGCGGCGCCGCGCGCCGGCGGCGGCGGCGCCGGCGGCAGC
AAGGCCTGGCGTCAGGCGCGCGGCGGCGGCGCCGGCGAGGCCTGGCAGCA
GGCGCGCAGCGTCGGCGGCAAGGGGCGGCGGCGTCAGGCGCGCTGCGACG
GCGGGGGCTGGCGTCAAGCGGGGGGGGTCGCGGTCAAAGGCGCAGAGCGG
CGCCGGCTGCCGCCAATGA
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protein sequence of jgi.p|Trimin1|352448

>Trimin1|352448|estExt_Genemark1.C_Ctg_1190036 ID=Trimin1|352448|estExt_Genemark1.C_Ctg_1190036|Name=jgi.p|Trimin1|352448|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=473bp
MGGRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSG
KSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRV
RVDGKELSTHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDA
LKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEK
LRTMQRGCVIEGVHYKGMVVNIDRGEKHNTWLVVHCVEGKNNQIRRVCQH
LNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVPVP
APRAADPRSVRAAALTGRRRAGLARAKAVPPRPSPTKGGAAAGATAQGAA
AKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKAR
DARQRRRAPAAAAPAAARPGVRRAAAAPARPGSRRAASAARGGGVRRAAT
AGAGVKRGGSRSKAQSGAGCRQ*
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mRNA from alignment at Contig_119:233268..237742+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10627 ID=mRNA_10627|Name=jgi.p|Trimin1|352448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4475bp|location=Sequence derived from alignment at Contig_119:233268..237742+ (Tribonema minus UTEX_B_3156 )
ATGGGGGGACGCGCCTCAAAAGTGCTGGAGGTGATGACTGTGCCTCAGCT
TGATTAGCCCTTGCCCACCAGATAGTCTACTTGGTCTGCAGACAATTACG
CCATGCTGCGAGCTCTTGCCCTGGCTCGCTCGCCAGCACTGGGTGCCGCG
AGGTTGCGTGCAGCTGTACATACATCGGCTAGGACAGCAAAGACCTTCAG
GAATGTGGCCGAGCCGGACAAGCGGTTGGTCGTTAACGCAGTGCCTGCCA
CATGGTCACCATCTGCTGCAGAGCAGCAACCGTCCACCATGAGCAATGAC
AATAACGACAGCAGCATTGGTGCTAAAAACCCCATAGTTCAGCGATTCCG
GCAGCTGCAGCAACAACGGCTTGCAGAGCTTGCCGCAAAAGCCAAGCCCC
CCGAGAGAAAGCGGCGCTCGAAGCGACGCTTGCCAGTCCAGGCCTCTGAT
GTTGACGCCAGAGCAAGTCATCAATCGGCTAGCGCACACGCAGCATCGCC
TGCAGACATGATGCTGCAGAGCCTTAGCTTCTCTGTCGGCGAAGCACCTG
AACTTGAGCACAGCACACATGCGGAAGAGCTTCTTTTTTCTCCGTTATTC
AATCCAGACATCGTCGGCAGCAGCAGCAGCAGCAACAGCGTCACTGGCCC
GCTCACAGAGGAGGGAGTGGTGAACGGTGGCAACAGCGGGGAGGAGCACG
CCGAGCTGCAGCCGCAGCGACAGCGCACGCGCAAGCAGCACGAGGTGATG
CGTCTCGCCAAGAGGATTGCCAGGTCCGGCAAAAGCAGCAGGCGAGAGGC
GGAGCGGCTCATACAGGAGGGCAGAGTGAAGGTGAGCGCGTGGCCTCTGA
ACAGCGCTTTTGACCACACTTCAATTGGCTAACGGGCTCGAGTGCGCTCT
GTGGTATGTTAGCACCGAATGCATCGCCTTCATATGCGTCCAGCTCCATG
TGGTTCTCACTCATGCTGTAGATGGTGTACTCAGTTTTGCTGGCGAGTGG
CCCATCGCAGGAGCATCAGCTAGAGCCAGGGTACCATCATGAGCTGTCAA
CGCCATGGCGATGGGGACTGCACGTTGTGGTTTGTGTCTACAGCGGCGTG
CAAGCAAAGGGTCCTTGCGAGCACAGGGCGCCCTCGGCCTGCCTCTGCCT
AGATGACTTGTATGCAACGCGGCGCCACTATGGCAGCGGCATCACGCTGT
GACACGCGTTGCAGATTTAGACACAGATCTTCATGGGCATCTGTCTGCAA
TATGGCGTCCTGCCTAGTCGCTGGCCATGCGCCTTCATCAGGGTGTTTGA
ACGCACAGCGCTGTGGTCCCCAGAAGGCACGGTGCCAGTCAGGTCTCTGT
GTGTGTCGAAGCGCAACTCTTGCGGCTGCGCTCTTGCCGCGCGCATGCTC
ACTGATGCGGGTACCCGGGCAGAGAGTCCACTGAGGCGAGGAAACATGAT
GTCCAGCAATGCCCCATCGGCAGCCGCGGCGCTACCTCTACCACCTGCAG
CTTCTGCTGTCGCTCGTGCGTCATGTCAGCGGCCACTGCGCTGCCCTGCC
TCTGCTGCTGCTGCTGCCGCCGCCGCTGCTGCTGCTTCCCTTCCACGCAC
TTACGAATCGCACACCCACCTGCCTCCGCCATCGCACACACGCCGCCGCC
CCGCAGATCAACGGCGCGGTCGCGCTGTCGCCCGCCGTCAACGTGAGCAC
CGCGGACCGCGTGCGCGTGGACGGCAAGGAGCTCAGCACGCACATTGCGC
CGGCGCGCGTGTGGGCGGTGCACAAGGCGCGCGGCGAGCTCGTCGCGCGC
AGCGACGAGAAGGGTGAGGGTTAGGGTTAGGGTTAGGGTCAGGATTACTG
TTTGGCCGCCAGCACGTCATGGCGCTTGAATTTGCGTCGTGCGCAGTGCA
GCGCGTGCCGCGGCGGATGGTTGGTGGCGCTGCACGGCGCCGGTGTCGCG
TGTGGCGACAGGCTTAGCAGCGTGCGCGTAACACACATCGGCAGCGACGC
GCGCGCTGCGGGCAGGCGGCGTCGAAATGCGGTCGGGCCAGTGCACTACG
CCCCGGCGACACACCAGTACACAAAACGCAACATCGTCAGCAGTAAACCT
CAACAATGTGACACGCGCTGATCTTCTCTGCTCCCTCTACGCGTTTATGT
GTAGGTCGGCGGTGCGTGCTGGAGCGCGTGAAGGCGGTGGGGCTCAGCGA
CGCGCTGAAGCCCGTGGGCAGGCTGGATTTCATGACGGAGGGGCTGCTGC
TGCTCACTGACGACGGGGACTTGGCTCGCAAGCTCGAACACCCCACCGTG
GGACTGCGAAGGGAGTACAGGGTGAGTCCACACGCGGTACATGGTTCAAC
CGTGAACTGTGGCGCCGGCGACCCCCCTTGGTACTGCGATGTCTGCTGGA
CGTTGTACCGGCAGTCACCCGAGCATCATGTGGCTCCTCGCCCTGAGTAG
AGGATGTATTGTAGCTTCTGGGGTGGTACCAGAAGGCTGGCAGCACCTCC
AGCCGCCAGCATGCAGCCTGCTGCGAACGGCACAGCCAGCAGATGGCAGC
CTGGACTTGCGCAGTGTTCTGCGCGTGCAATTGCATGGGGGCTCACGATG
CGATGACCGCAGAGACAGCGCGCCGCACAGACTCTGAGCATAAGAGTGAT
CATCGCTGCTGCTGGTCTGCGCCAACATGCGTGAGGCTACATGGTTGTGT
TTACGATGGCCGGCGCACGCCGCGCATGTCATCTCACACTGCTGCTGCTG
CACCCCCCTGGGTGCACATACCCTCGCCGTGCAGGTGCGCGTGTTCGGCA
GCGTGACGGCGGAGAAGCTGCGCACCATGCAGCGCGGCTGCGTCATCGAA
GGCGTGCACTACAAGGGCATGGTTGTCAACATCGACAGGGGAGAGAAGCA
CAACACGTGGCTCGTGGTGCACTGCGTGGAGGGCAAGGTGGGGCATGCTT
TTCACTCTGAGCTTCAAAGTTCAGTAAGGTTGTCGTGTCTGTGCTAAGGT
TAGGTGCCAGGATGTGCACAGGGTAGGATGGCTGCGCGTGCTACTCTCAT
GTCTCAACTGTGTTCACTGATGAACGATATGCAATGGACGTAGCAGCTAC
TAAGTGTCCCCCGTTTCAGATGCACGTACCTTGAAGCACATGTATCATTC
ACCAGCGGTTCACAGTGCCTGTGCCTGCACAATAGTGCCTCTTGCATCTG
GTTTTCGCTGTGTGCTCACATCTTGTAGGCACACCAGTCGTGTATTGATG
GGCGCAGCTGGCTACGTGCCTTTCTTCCTCGTATCATGCATTCCCAATCA
CTGGAAATACAACCTCTCCTCATGCTCTTGTGCTAAACTTGTCGCTGAAC
GTCGTCTGTCCACTGGATGCTGCAGAACAACCAGATCCGCCGTGTCTGCC
AGCACTTGAATTTGACAGTCAACAGACTTATCCGGACCGCTTTCGGGCCG
TTCAAACTGGGGAAAATGGCCTCTGGTGGGGTGGCAGAAGTGCCGTTGCA
TGAACAGTTTCTTAAACAGGTGAGCAAACTGTAGATGGTGACGCTCCAGA
GGCATGGCTGCTACGTTTGTACTTCTGAGTACAAATGTTGCCTTGTTTGG
TTCTGCCGACCGGATGTAGCATGGCGGCATTGGCAAACCGCATTTTCTGA
ATGTGGACTTACAGGCAAGGAGCACAGAGTGCCGCATGAGCTCTCCTGTG
ATGTGTGGTCATGATTGCATTGTTTTGAAGCGACACGCACGCAAGTGAAA
GACACTGGTTGATAACAGTGGTAACAAAGGGGCACCGCAGAGGCGCAACA
CCTCCGCCGCACGAACGTCAACAGCGTCAGCACTGCAGTCACCTCCCCCC
CCCCCTTCCCCCCTGCCCACACCCCCTGCTAACCGCAATCTCACTCCCTC
CCCCCCCCCCCCCCTATCAGGTCAACACCGCCATGGAGACGGGCGTGCCC
GTCCCAGCGCCGCGCGCCGCCGACCCGCGCAGCGTGCGCGCCGCCGCCCT
GACCGGCCGCCGCCGCGCTGGGCTCGCGCGCGCCAAGGCAGTGCCGCCGC
GGCCGAGCCCCACGAAGGGGGGCGCGGCGGCGGGGGCAACGGCGCAGGGG
GCGGCGGCGAAGTGGGGCGTGCGCGTGAAGCGCGGCCGCGGCGGCGGCGT
GACGGTGCGCGCGCCCAAGGCGGACGCCGAGGAGCCCGTGCGCGAGGCGC
GCAAGCGCAAGAAGGCCAACAAGGTGCTCGCGTGGAAGCTGCGCGCGAAG
GCGAGGGACGCGCGGCAGCGGCGCCGCGCGCCGGCGGCGGCGGCGCCGGC
GGCAGCAAGGCCTGGCGTCAGGCGCGCGGCGGCGGCGCCGGCGAGGCCTG
GCAGCAGGCGCGCAGCGTCGGCGGCAAGGGGCGGCGGCGTCAGGCGCGCT
GCGACGGCGGGGGCTGGCGTCAAGCGGGGGGGGTCGCGGTCAAAGGCGCA
GAGCGGCGCCGGCTGCCGCCAATGA
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Coding sequence (CDS) from alignment at Contig_119:233268..237742+

>mRNA_10627 ID=mRNA_10627|Name=jgi.p|Trimin1|352448|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1419bp|location=Sequence derived from alignment at Contig_119:233268..237742+ (Tribonema minus UTEX_B_3156 )
ATGGGGGGACGCGCCTCAAAAGTGCTGGAGGAGGGAGTGGTGAACGGTGG
CAACAGCGGGGAGGAGCACGCCGAGCTGCAGCCGCAGCGACAGCGCACGC
GCAAGCAGCACGAGGTGATGCGTCTCGCCAAGAGGATTGCCAGGTCCGGC
AAAAGCAGCAGGCGAGAGGCGGAGCGGCTCATACAGGAGGGCAGAGTGAA
GCCGCGGCGCTACCTCTACCACCTGCAGCTTCTGCTGTCGCTCATCAACG
GCGCGGTCGCGCTGTCGCCCGCCGTCAACGTGAGCACCGCGGACCGCGTG
CGCGTGGACGGCAAGGAGCTCAGCACGCACATTGCGCCGGCGCGCGTGTG
GGCGGTGCACAAGGCGCGCGGCGAGCTCGTCGCGCGCAGCGACGAGAAGG
GTCGGCGGTGCGTGCTGGAGCGCGTGAAGGCGGTGGGGCTCAGCGACGCG
CTGAAGCCCGTGGGCAGGCTGGATTTCATGACGGAGGGGCTGCTGCTGCT
CACTGACGACGGGGACTTGGCTCGCAAGCTCGAACACCCCACCGTGGGAC
TGCGAAGGGAGTACAGGGTGCGCGTGTTCGGCAGCGTGACGGCGGAGAAG
CTGCGCACCATGCAGCGCGGCTGCGTCATCGAAGGCGTGCACTACAAGGG
CATGGTTGTCAACATCGACAGGGGAGAGAAGCACAACACGTGGCTCGTGG
TGCACTGCGTGGAGGGCAAGAACAACCAGATCCGCCGTGTCTGCCAGCAC
TTGAATTTGACAGTCAACAGACTTATCCGGACCGCTTTCGGGCCGTTCAA
ACTGGGGAAAATGGCCTCTGGTGGGGTGGCAGAAGTGCCGTTGCATGAAC
AGTTTCTTAAACAGGTCAACACCGCCATGGAGACGGGCGTGCCCGTCCCA
GCGCCGCGCGCCGCCGACCCGCGCAGCGTGCGCGCCGCCGCCCTGACCGG
CCGCCGCCGCGCTGGGCTCGCGCGCGCCAAGGCAGTGCCGCCGCGGCCGA
GCCCCACGAAGGGGGGCGCGGCGGCGGGGGCAACGGCGCAGGGGGCGGCG
GCGAAGTGGGGCGTGCGCGTGAAGCGCGGCCGCGGCGGCGGCGTGACGGT
GCGCGCGCCCAAGGCGGACGCCGAGGAGCCCGTGCGCGAGGCGCGCAAGC
GCAAGAAGGCCAACAAGGTGCTCGCGTGGAAGCTGCGCGCGAAGGCGAGG
GACGCGCGGCAGCGGCGCCGCGCGCCGGCGGCGGCGGCGCCGGCGGCAGC
AAGGCCTGGCGTCAGGCGCGCGGCGGCGGCGCCGGCGAGGCCTGGCAGCA
GGCGCGCAGCGTCGGCGGCAAGGGGCGGCGGCGTCAGGCGCGCTGCGACG
GCGGGGGCTGGCGTCAAGCGGGGGGGGTCGCGGTCAAAGGCGCAGAGCGG
CGCCGGCTGCCGCCAATGA
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