Trimin1|352414|estExt_Genemark1.C_Ctg_1180047 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352414
Unique NameTrimin1|352414|estExt_Genemark1.C_Ctg_1180047
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length229
Homology
BLAST of jgi.p|Trimin1|352414 vs. uniprot
Match: A0A836CN06_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN06_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 9.660e-143
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query:    1 MDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 228
            MDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV
Sbjct:    1 MDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 228          
BLAST of jgi.p|Trimin1|352414 vs. uniprot
Match: D7G8N9_ECTSI (Myb-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N9_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 3.140e-55
Identity = 105/211 (49.76%), Postives = 135/211 (63.98%), Query Frame = 0
Query:   22 ADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDG----SFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 228
            A+  WTEFEDWLLQDT++RYAIGSGKHVLW RMV EVPEL+ RTPQEAR RWL +TGRL+    GG                 +G+P ++ FY+QPP+L  WEE+ +G    SF G+V G  GLADG  + T  +D++GR++ DQYV T+CG V+ELG RR  D       ++  +S     AP   LA A A    T L+HH+Q+EVFV+
Sbjct:  164 AEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLS---AGGAEGGSRRERGEVM----AGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETD------LVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 361          
BLAST of jgi.p|Trimin1|352414 vs. uniprot
Match: A0A7S0Q7J8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q7J8_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 7.950e-12
Identity = 40/130 (30.77%), Postives = 62/130 (47.69%), Query Frame = 0
Query:   20 EEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRT 149
            E+ +  W++ E W L+D    Y++  G+ V+W R+  +VPELIGR P++ R RWL +                            + AP V  +   PP L +WE L D  F+G + G+ G+ DG +  T
Sbjct:   53 EDLEDGWSDRELWALEDAVPHYSLERGRLVMWRRLSLDVPELIGRPPEQLRARWLSLQ--------------------------PADAPQV--WPENPPTLENWEALGDSCFQGDLFGVSGVRDGTVRAT 154          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352414 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CN06_9STRA9.660e-143100.00Myb-like domain-containing protein n=1 Tax=Tribone... [more]
D7G8N9_ECTSI3.140e-5549.76Myb-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S0Q7J8_9EUKA7.950e-1230.77Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..108
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 25..77
score: 6.457902

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:394058..397181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352414mRNA_13273Tribonema minus UTEX_B_3156 mRNAContig_118 394031..397181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352414|estExt_Genemark1.C_Ctg_1180047 ID=Trimin1|352414|estExt_Genemark1.C_Ctg_1180047|Name=jgi.p|Trimin1|352414|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=229bp
MDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVL
WNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGGSGAAAAAAKQRS
GSGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRTR
GVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAA
PLLALASAAAVLGATVLTHHVQLEVFVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb