mRNA_13273 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352414
Unique NamemRNA_13273
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352414 vs. uniprot
Match: A0A836CN06_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN06_9STRA)

HSP 1 Score: 407 bits (1046), Expect = 9.760e-143
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1 
Query:   28 MDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 711
            MDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV
Sbjct:    1 MDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 228
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BLAST of jgi.p|Trimin1|352414 vs. uniprot
Match: D7G8N9_ECTSI (Myb-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N9_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 3.050e-55
Identity = 112/241 (46.47%), Postives = 146/241 (60.58%), Query Frame = 1 
Query:    1 KGASQFRATMDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDG----SFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 711
            +GA+  R    G A   ++   F  +   EA   WTEFEDWLLQDT++RYAIGSGKHVLW RMV EVPEL+ RTPQEAR RWL +TGRL+    GG                 +G+P ++ FY+QPP+L  WEE+ +G    SF G+V G  GLADG  + T  +D++GR++ DQYV T+CG V+ELG RR  D       ++  +S     AP   LA A A    T L+HH+Q+EVFV+
Sbjct:  136 EGATAVRVGKWGEAAEGNLAGEFEWEGGAEA--AWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLS---AGGAEGGSRRERGEVM----AGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETD------LVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 361
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BLAST of jgi.p|Trimin1|352414 vs. uniprot
Match: A0A7S0Q7J8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q7J8_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 9.380e-12
Identity = 40/130 (30.77%), Postives = 62/130 (47.69%), Query Frame = 1 
Query:   85 EEADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRT 474
            E+ +  W++ E W L+D    Y++  G+ V+W R+  +VPELIGR P++ R RWL +                            + AP V  +   PP L +WE L D  F+G + G+ G+ DG +  T
Sbjct:   53 EDLEDGWSDRELWALEDAVPHYSLERGRLVMWRRLSLDVPELIGRPPEQLRARWLSLQ--------------------------PADAPQV--WPENPPTLENWEALGDSCFQGDLFGVSGVRDGTVRAT 154
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352414 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CN06_9STRA9.760e-143100.00Myb-like domain-containing protein n=1 Tax=Tribone... [more]
D7G8N9_ECTSI3.050e-5546.47Myb-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S0Q7J8_9EUKA9.380e-1230.77Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:394031..397181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352414|estExt_Genemark1.C_Ctg_1180047
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002440.1
TranscriptId352736
TrackFilteredModels1
ProteinId352414
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352414gene_13273Tribonema minus UTEX_B_3156 geneContig_118 394031..397181 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13273_1exon_13273_1Tribonema minus UTEX_B_3156 exonContig_118 394031..394162 +
exon_13273_2exon_13273_2Tribonema minus UTEX_B_3156 exonContig_118 395065..395425 +
exon_13273_3exon_13273_3Tribonema minus UTEX_B_3156 exonContig_118 396961..397181 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13273UTR5_13273Tribonema minus UTEX_B_3156 five_prime_UTRContig_118 394031..394057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13273CDS_13273Tribonema minus UTEX_B_3156 CDSContig_118 394058..394162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352414Trimin1|352414|estExt_Genemark1.C_Ctg_1180047Tribonema minus UTEX_B_3156 polypeptideContig_118 394058..397181 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13273 ID=mRNA_13273|Name=jgi.p|Trimin1|352414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=714bp|location=Sequence derived from alignment at Contig_118:394031..397181+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGGGAGCGTCCCAATTTCGGGCGACCATGGATGGCGTGGCTACGGCCAG
CTCTGTGCGATACCGGTTCTCGGAGGACCAGCACGAGGAGGCCGACATGC
CATGGACTGAATTCGAAGATTGGCTCTTGCAGGACACGTTCGCGCGCTAC
GCCATCGGCTCTGGCAAGCACGTGCTCTGGAACCGCATGGTCACGGAGGT
CCCGGAGCTCATAGGGCGCACGCCGCAAGAGGCGCGGCGGCGCTGGCTCC
ACATCACCGGCAGGCTGACGGATCAGCGGCAGGGCGGCGGCAGCGGCGCG
GCCGCTGCGGCGGCGAAGCAGCGCAGCGGCAGCGGCAGCAGCGGCGCACC
CGATGTGGAGACATTTTACCTGCAGCCACCGCTGCTGCACGACTGGGAGG
AACTTGAGGACGGGTCATTTGAGGGGAGCGTGGAGGGGATGGGGGGGCTC
GCGGACGGCGTGCTGGTGCGCACGCGCGGCGTCGATCTTGCAGGGCGCCG
CGTCGCGGACCAGTACGTGCGCACGGAGTGCGGCGCCGTCTTTGAGCTCG
GCGCGCGGCGCGGCGCGGACGACGACGCCGCAACCACGGCGCTGGCGCCC
GTGGCGAGCGCGTTCGCGGCGGCGGCGCCGCTGCTCGCGCTGGCGTCCGC
GGCGGCGGTCCTCGGCGCGACGGTGCTCACGCACCACGTGCAGCTCGAGG
TGTTTGTCGTGTGA
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protein sequence of jgi.p|Trimin1|352414

>Trimin1|352414|estExt_Genemark1.C_Ctg_1180047 ID=Trimin1|352414|estExt_Genemark1.C_Ctg_1180047|Name=jgi.p|Trimin1|352414|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=229bp
MDGVATASSVRYRFSEDQHEEADMPWTEFEDWLLQDTFARYAIGSGKHVL
WNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGGSGAAAAAAKQRS
GSGSSGAPDVETFYLQPPLLHDWEELEDGSFEGSVEGMGGLADGVLVRTR
GVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAA
PLLALASAAAVLGATVLTHHVQLEVFVV*
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mRNA from alignment at Contig_118:394031..397181+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13273 ID=mRNA_13273|Name=jgi.p|Trimin1|352414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3151bp|location=Sequence derived from alignment at Contig_118:394031..397181+ (Tribonema minus UTEX_B_3156 )
AAGGGAGCGTCCCAATTTCGGGCGACCATGGATGGCGTGGCTACGGCCAG
CTCTGTGCGATACCGGTTCTCGGAGGACCAGCACGAGGAGGCCGACATGC
CATGGACTGAATTCGAAGATTGGCTCTTGCAGGTAACATGGATCCATGTA
CATCGATCCACAGTTACCAGCTTGACAGCATCGCAAAACTCAGCTGCATC
GTGAAAGTCAAGTTGTTGCTTGCATTTGGCTTTTTCAATCCCACCTTCAA
TGCGAGCTTCGCTTTGAGATCATGTTCACTTGATCTACTGTACATAGCTT
TGAGCAAGATCAGTTGATATCAACTTACCTCAGACCGTGTACTGCTCCAA
TCAAGCTTTGGGGGCGCAGGGCGATGCCACCTGCTGGTGTCCACAAGCAG
ATGTGGCTGGCAACTCGCGATTTGCTTGTATGGCATGCTGTTGCGGCCTG
GCACCTAGTGAAATGCATAGCTATGTGAGTTAAGTGCGTGCTGTTATTGT
TATTTTCGCACCCGCTGCTGTCATGTCACACGAGTGGCTTGCTACACGAT
GCGCAGCTAACACTCAAGGCCATGGACATGAACCCATGCGCGTTTGCAGC
AACACACGCACAGTCTCAAACAGATAGCAATCACAGTCTGGCGCGTTGCA
CTCACCACACATGGACCGCAAATTGCTGACCATTTTGACCTCAACTTTAA
AGAAGTGCGAACACCCTTCTGATGTTGAAGTGCTCTCTGCGCATGTTGCC
CAGTTGTTATAACACTCCCCATCACTGCCGATCACCTGGAACCGCATGCC
TGCTCGCGCGGACGCACCGCTGCTGCGCGCGCGGCAGGACACGTTCGCGC
GCTACGCCATCGGCTCCGGCAAGCATCGCTGTCCCATGCTGAATGCAACT
GCCAGGGGGGGTAAACACCCCTCCAATGTTGAAAGTTTCATTTGCGCATG
TTGCCCAGTTGTTGCAACACTCGCCACCACCGCAGCTCACCTGAAACGGC
ATGCCCTCTGACGTGGGCGCTGCGCGCGCCGCAGGACACGTTCGCGCGCT
ACGCCATCGGCTCTGGCAAGCACGTGCTCTGGAACCGCATGGTCACGGAG
GTCCCGGAGCTCATAGGGCGCACGCCGCAAGAGGCGCGGCGGCGCTGGCT
CCACATCACCGGCAGGCTGACGGATCAGCGGCAGGGCGGCGGCAGCGGCG
CGGCCGCTGCGGCGGCGAAGCAGCGCAGCGGCAGCGGCAGCAGCGGCGCA
CCCGATGTGGAGACATTTTACCTGCAGCCACCGCTGCTGCACGACTGGGA
GGAACTTGAGGACGGGTCATTTGAGGGGAGCGTGGAGGGGATGGGGGGGC
TCGCGGACGGCGTGCTGGTGCGCACGCGCGGCGTCGATCTTGCAGGTCAG
TGCTCAGCAGCGGCAACTGCTCACCAGTAGCAGCGCTCAAACAGTAGCAG
TGCTCAGAGCTGCGAGCAGCGCCGGCCTCGCAGGTCAGTGCTCAGCAGCA
GCAGTGCTCGACAGTAGCAGTGCTCAAAGAGTAGCAGTGCTTAGAGCTAC
GTGCAGCGTCGACCTCGCAGGTCAGTGCTCAGCAGCAGCAGTGCTCGACA
GTAGCAGTGCTCAAAAAGTAGCAGTGCTCAGAGCTACGTGCAGCGTCGAC
CTTGCAGGTCAGTGCTCAGCAGCAGCAGTGCTCACCACAGCAGTGCTCAA
AGCTGCGAGCAGCGCCGACCTCGCAGGTCAGTGCTCACCAGCAGCAACTG
CTCACTTATAGCAGTGCTGAGAGCTGCGATCGCTGGCGCTTGTGGAAGAT
TGTGCGTGACTGGGGTGTCGGTGTTGCGGGTAATGGTGACTGAGGGAGGT
TGCCGTGGCTCATGGCAGACCTCAGCTACTTTGAATTAGGGCAAGTGATA
GGGTAAGGGTCAGGTACAACTGTTCTGGGAGTTCTGGGAGTGCTCGGTGG
GCTGATGACTCAACTGTTACACATGCTTTGTGCAGGGCCCCCCATTTCTT
TTCAAAGTAGCCATCAAGGAGCCGTGCAGGCAATATGCAACTTGCAGTAA
ATTTTGGCGAGAGCTTCGTGAATACATGTGGCAATGATTGCGCCATGTTG
CAGTAACGACGACTTCCCATCAAGTGACATGGAGCAGGCCGTGCTCTACG
TTTCATGCTCTAGGTAGTGTGCAACTGCTGCACTTAGGGCTACATTTCAA
AGTCAGCATACACTACAGCCCACTGGTTGAGCGCTGTTGGCGCCGACAGG
ACTCAGACTCAGACTCTTTGACCCCAAATGCCCCAGAGTACAATGAAGTA
GAATGCAGTCGACGTCATGGCTGTGTCGACAAGTGCAGGCCACAGTTGAG
GCGCAGGTTGGTGCCAGCGAAGTTTGCATTGAAGTTTTGCAAGTGGATGA
CGCGCCTGAAGTAGTATCAAACAGCGCACGCAAAACCACCCCTGGATTGC
AAGATGCTCTGAGCACTGCAGTGAACATCCATGCGGAGTTCTGCAAGGGC
CACAGGATGCTCTCAGAACACAAGGGGGGGGGGGGGGGGGAGACGCAGGA
ATGGCTTTCAGCGGCGCAGAGCTACAGTCGATTCGGCCGCACACTCTCGA
TTGTGAGTGGGTGTATGACCGCTCTGACGTAGCCCCACAAGTGAGTGTGA
GCTTTAAGACTGGCGCACCGAGAAGCACTCGTGGCATCCTGTGCACCAGC
GGCAATTAACAGTCCTGATTTGCACAATGCAACATGCTTGCATTCATTCG
CATTCATTTCCGCTGCCCGTGGCCCCAACCTCGACCGCGGCGGCCACTAT
CATATGTATGAGCTGCCAGACAGCCTCAGCCCAGAACAGACGCAGCCGAT
CCTACAGAGAGTATGGATGACCAATACCCCCCCCCCCCCCCCCCCGCGCC
CCCCTCCCCTTCCCGCCGCCCCCTGCACAGGGCGCCGCGTCGCGGACCAG
TACGTGCGCACGGAGTGCGGCGCCGTCTTTGAGCTCGGCGCGCGGCGCGG
CGCGGACGACGACGCCGCAACCACGGCGCTGGCGCCCGTGGCGAGCGCGT
TCGCGGCGGCGGCGCCGCTGCTCGCGCTGGCGTCCGCGGCGGCGGTCCTC
GGCGCGACGGTGCTCACGCACCACGTGCAGCTCGAGGTGTTTGTCGTGTG
A
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Coding sequence (CDS) from alignment at Contig_118:394031..397181+

>mRNA_13273 ID=mRNA_13273|Name=jgi.p|Trimin1|352414|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=687bp|location=Sequence derived from alignment at Contig_118:394031..397181+ (Tribonema minus UTEX_B_3156 )
ATGGATGGCGTGGCTACGGCCAGCTCTGTGCGATACCGGTTCTCGGAGGA
CCAGCACGAGGAGGCCGACATGCCATGGACTGAATTCGAAGATTGGCTCT
TGCAGGACACGTTCGCGCGCTACGCCATCGGCTCTGGCAAGCACGTGCTC
TGGAACCGCATGGTCACGGAGGTCCCGGAGCTCATAGGGCGCACGCCGCA
AGAGGCGCGGCGGCGCTGGCTCCACATCACCGGCAGGCTGACGGATCAGC
GGCAGGGCGGCGGCAGCGGCGCGGCCGCTGCGGCGGCGAAGCAGCGCAGC
GGCAGCGGCAGCAGCGGCGCACCCGATGTGGAGACATTTTACCTGCAGCC
ACCGCTGCTGCACGACTGGGAGGAACTTGAGGACGGGTCATTTGAGGGGA
GCGTGGAGGGGATGGGGGGGCTCGCGGACGGCGTGCTGGTGCGCACGCGC
GGCGTCGATCTTGCAGGGCGCCGCGTCGCGGACCAGTACGTGCGCACGGA
GTGCGGCGCCGTCTTTGAGCTCGGCGCGCGGCGCGGCGCGGACGACGACG
CCGCAACCACGGCGCTGGCGCCCGTGGCGAGCGCGTTCGCGGCGGCGGCG
CCGCTGCTCGCGCTGGCGTCCGCGGCGGCGGTCCTCGGCGCGACGGTGCT
CACGCACCACGTGCAGCTCGAGGTGTTTGTCGTGTGA
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