Trimin1|352376|estExt_Genemark1.C_Ctg_1170077 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352376
Unique NameTrimin1|352376|estExt_Genemark1.C_Ctg_1170077
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length254
Homology
BLAST of jgi.p|Trimin1|352376 vs. uniprot
Match: A0A836CLW1_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW1_9STRA)

HSP 1 Score: 564 bits (1453), Expect = 4.110e-204
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query:    1 MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNKDPYSKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATAT 253
            MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNKDPYSKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATAT
Sbjct:    1 MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNKDPYSKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATAT 253          
BLAST of jgi.p|Trimin1|352376 vs. uniprot
Match: A0A835Z859_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z859_9STRA)

HSP 1 Score: 516 bits (1328), Expect = 9.900e-184
Identity = 233/264 (88.26%), Postives = 242/264 (91.67%), Query Frame = 0
Query:    1 MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNK------------DPYSKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATA 252
            + EALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFP NDKNCLNGNLECEKEIYAFTPFGSTRN+            DP SKHYGS CVARVQCAKGQDACGRSKKA SIL+TADNTCCPC+TKCYT+ TDGGGYKTKCLDCAVPCGRDYV+KPGIDTQCCLPRQTCIPS +GAAEP+TTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAP FKGVFC+K  AATA
Sbjct:   72 VQEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPFNDKNCLNGNLECEKEIYAFTPFGSTRNQVCCKVATHDCVQDPDSKHYGSICVARVQCAKGQDACGRSKKAGSILQTADNTCCPCNTKCYTIDTDGGGYKTKCLDCAVPCGRDYVNKPGIDTQCCLPRQTCIPSFHGAAEPDTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPGFKGVFCDKAVAATA 335          
BLAST of jgi.p|Trimin1|352376 vs. uniprot
Match: A0A835ZAJ2_9STRA (EGF-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ2_9STRA)

HSP 1 Score: 231 bits (590), Expect = 2.760e-72
Identity = 118/259 (45.56%), Postives = 144/259 (55.60%), Query Frame = 0
Query:   10 KCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDN-TWGTACFPVNDKNCLNGNLECEKEIYAFTPFG-----------STRN--KDPYSKHY-GSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATAT 253
            KC   E +CG  ++ GADEY P +   +T CC GVV G+SACKALPI  D   WGT C PV  K+C      C    YAFT  G           ST     DP ++ Y G+ CV + +CAKG+ ACGRSK+A  IL  +D+ CCP   +CY V    G + TKC  C  PCGR  VD+PG D         C  + +G A P TT CAY F C  D CKN G+C   +FPY GQF +C CAP FKGVFC   AA  ++
Sbjct:   32 KCDVPEAECGGTFRAGADEYTPEKVDAHTQCCPGVVNGESACKALPIDKDTGIWGTHCAPVT-KDCPFDAPACGSNTYAFTLSGGQTVDNICCPSSTHECVSDPAARAYNGTKCVKKQKCAKGRQACGRSKEAGQILVNSDDKCCPAGQQCYMVDQPNGSFTTKCSSCNTPCGRAQVDQPGDDXXXXXXXXQCTAAFHGTAAPVTTRCAYAFKCEDDTCKNSGRCVEDEFPYQGQFKKCHCAPGFKGVFCEIKAATKSS 289          
BLAST of jgi.p|Trimin1|352376 vs. uniprot
Match: A0A835YUV0_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.310e-29
Identity = 76/192 (39.58%), Postives = 93/192 (48.44%), Query Frame = 0
Query:   92 GSTRNKDPYSKHY-GSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHT-------------------------------DG--GGYKTKCLDCAVPCGRDYV-DKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAG---QFDRCDCAPEFKGVFCN 245
            G+T   DP    Y G+TC A V+CA G+D CGR++   S LE+ D  CCP   +C+                                   DG  G Y TKC  CA PCGR  + DK G D +CC  RQ C P+  G  +  TTHC Y FPCSK LCK+GGKC     P+ G   +F RC C   +KG FC 
Sbjct:  228 GATCVPDPARPKYDGTTCAAPVRCAAGRDPCGRAR-GRSDLESVDTRCCPRGEQCFIKLRCAGAAAIDAAALTFSLRAPILFGGAISGSLRDGKNGRYTTKCGKCAKPCGRAKLSDKQG-DNRCCNYRQVCRPAFNGVRDSVTTHCVYPFPCSKGLCKHGGKCVESSSPFEGHRGRFQRCRCKRGWKGAFCQ 417          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352376 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CLW1_9STRA4.110e-204100.00EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z859_9STRA9.900e-18488.26EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835ZAJ2_9STRA2.760e-7245.56EGF-like domain-containing protein n=2 Tax=Tribone... [more]
A0A835YUV0_9STRA5.310e-2939.58EGF-like domain-containing protein n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.10.25.10Laminincoord: 207..248
e-value: 1.2E-5
score: 27.2
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 207..247
IPR000742EGF-like domainPROSITEPS00022EGF_1coord: 233..244
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 204..245
score: 12.307925

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:395581..397658 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352376mRNA_5128Tribonema minus UTEX_B_3156 mRNAContig_117 395377..397658 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352376|estExt_Genemark1.C_Ctg_1170077 ID=Trimin1|352376|estExt_Genemark1.C_Ctg_1170077|Name=jgi.p|Trimin1|352376|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=254bp
MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSA
CKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNKDPY
SKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHT
DGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTT
HCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAA
TAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom