mRNA_5128 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352376
Unique NamemRNA_5128
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352376 vs. uniprot
Match: A0A836CLW1_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW1_9STRA)

HSP 1 Score: 562 bits (1448), Expect = 3.730e-202
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1 
Query:    1 MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNKDPYSKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATAT 759
            MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNKDPYSKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATAT
Sbjct:    1 MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNKDPYSKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATAT 253
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BLAST of jgi.p|Trimin1|352376 vs. uniprot
Match: A0A835Z859_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z859_9STRA)

HSP 1 Score: 514 bits (1323), Expect = 8.740e-182
Identity = 233/264 (88.26%), Postives = 242/264 (91.67%), Query Frame = 1 
Query:    1 MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNK------------DPYSKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAATA 756
            + EALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFP NDKNCLNGNLECEKEIYAFTPFGSTRN+            DP SKHYGS CVARVQCAKGQDACGRSKKA SIL+TADNTCCPC+TKCYT+ TDGGGYKTKCLDCAVPCGRDYV+KPGIDTQCCLPRQTCIPS +GAAEP+TTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAP FKGVFC+K  AATA
Sbjct:   72 VQEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDNTWGTACFPFNDKNCLNGNLECEKEIYAFTPFGSTRNQVCCKVATHDCVQDPDSKHYGSICVARVQCAKGQDACGRSKKAGSILQTADNTCCPCNTKCYTIDTDGGGYKTKCLDCAVPCGRDYVNKPGIDTQCCLPRQTCIPSFHGAAEPDTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPGFKGVFCDKAVAATA 335
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BLAST of jgi.p|Trimin1|352376 vs. uniprot
Match: A0A835ZAJ2_9STRA (EGF-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ2_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.150e-70
Identity = 118/255 (46.27%), Postives = 142/255 (55.69%), Query Frame = 1 
Query:   28 KCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSACKALPIQSDN-TWGTACFPVNDKNCLNGNLECEKEIYAFTPFG-----------STRN--KDPYSKHY-GSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHTDGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAA 747
            KC   E +CG  ++ GADEY P +   +T CC GVV G+SACKALPI  D   WGT C PV  K+C      C    YAFT  G           ST     DP ++ Y G+ CV + +CAKG+ ACGRSK+A  IL  +D+ CCP   +CY V    G + TKC  C  PCGR  VD+PG D         C  + +G A P TT CAY F C  D CKN G+C   +FPY GQF +C CAP FKGVFC   AA
Sbjct:   32 KCDVPEAECGGTFRAGADEYTPEKVDAHTQCCPGVVNGESACKALPIDKDTGIWGTHCAPVT-KDCPFDAPACGSNTYAFTLSGGQTVDNICCPSSTHECVSDPAARAYNGTKCVKKQKCAKGRQACGRSKEAGQILVNSDDKCCPAGQQCYMVDQPNGSFTTKCSSCNTPCGRAQVDQPGDDXXXXXXXXQCTAAFHGTAAPVTTRCAYAFKCEDDTCKNSGRCVEDEFPYQGQFKKCHCAPGFKGVFCEIKAA 285
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BLAST of jgi.p|Trimin1|352376 vs. uniprot
Match: A0A835YUV0_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.770e-28
Identity = 76/191 (39.79%), Postives = 93/191 (48.69%), Query Frame = 1 
Query:  274 GSTRNKDPYSKHY-GSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHT-------------------------------DG--GGYKTKCLDCAVPCGRDYV-DKPGIDTQCCLPRQTCIPSVYGAAEPNTTHCAYDFPCSKDLCKNGGKCRVKQFPYAG---QFDRCDCAPEFKGVFC 732
            G+T   DP    Y G+TC A V+CA G+D CGR++   S LE+ D  CCP   +C+                                   DG  G Y TKC  CA PCGR  + DK G D +CC  RQ C P+  G  +  TTHC Y FPCSK LCK+GGKC     P+ G   +F RC C   +KG FC
Sbjct:  228 GATCVPDPARPKYDGTTCAAPVRCAAGRDPCGRAR-GRSDLESVDTRCCPRGEQCFIKLRCAGAAAIDAAALTFSLRAPILFGGAISGSLRDGKNGRYTTKCGKCAKPCGRAKLSDKQG-DNRCCNYRQVCRPAFNGVRDSVTTHCVYPFPCSKGLCKHGGKCVESSSPFEGHRGRFQRCRCKRGWKGAFC 416
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352376 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CLW1_9STRA3.730e-202100.00EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z859_9STRA8.740e-18288.26EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835ZAJ2_9STRA1.150e-7046.27EGF-like domain-containing protein n=2 Tax=Tribone... [more]
A0A835YUV0_9STRA5.770e-2839.79EGF-like domain-containing protein n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:395377..397658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352376|estExt_Genemark1.C_Ctg_1170077
Hectar predicted targeting categoryother localisation
TranscriptId352698
TrackFilteredModels1
ProteinId352376
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352376gene_5128Tribonema minus UTEX_B_3156 geneContig_117 395377..397658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352376Trimin1|352376|estExt_Genemark1.C_Ctg_1170077Tribonema minus UTEX_B_3156 polypeptideContig_117 395581..397658 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5128_4exon_5128_4Tribonema minus UTEX_B_3156 exonContig_117 395377..396022 -
exon_5128_3exon_5128_3Tribonema minus UTEX_B_3156 exonContig_117 396939..396967 -
exon_5128_2exon_5128_2Tribonema minus UTEX_B_3156 exonContig_117 397004..397138 -
exon_5128_1exon_5128_1Tribonema minus UTEX_B_3156 exonContig_117 397503..397658 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5128UTR3_5128Tribonema minus UTEX_B_3156 three_prime_UTRContig_117 395377..395580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5128CDS_5128Tribonema minus UTEX_B_3156 CDSContig_117 397503..397658 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5128 ID=mRNA_5128|Name=jgi.p|Trimin1|352376|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=966bp|location=Sequence derived from alignment at Contig_117:395377..397658- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGGCTCTCAAGGCGCCTCCAAAGTGCCAGTATGAGGAGGATCA
GTGCGGGGCACGCTGGAAAACTGGCGCTGATGAGTACAACCCGGTGCAGC
AGACGCCCTACACCACCTGTTGCCAAGGCGTGGTGTTCGGCCAAAGTGCC
TGCAAGGCACTGCCCATCCAGAGCGATAACACATGGGGCACCGCGTGCTT
TCCGGTCAACGACAAGAACTGTCTGAATGGCAACTTGGAGTGCGAGAAGG
AAATCTATGCATTCACGCCCTTTGGCTCGACTCGCAATAAAGACCCGTAC
TCCAAGCACTATGGCTCAACCTGCGTGGCCAGAGTGCAGTGCGCCAAGGG
CCAGGACGCATGCGGCCGCAGCAAGAAGGCCGACTCCATCCTGGAAACCG
CAGACAACACGTGCTGCCCGTGCAGTACCAAGTGCTACACCGTACACACG
GACGGCGGCGGCTACAAGACCAAGTGCCTTGACTGTGCTGTGCCATGTGG
CCGCGACTACGTCGACAAGCCCGGCATTGACACGCAGTGCTGCCTGCCGC
GCCAGACCTGCATACCGTCTGTATACGGCGCCGCAGAGCCCAACACGACG
CACTGCGCGTACGACTTCCCCTGCAGCAAGGACTTGTGCAAGAACGGCGG
CAAGTGCCGCGTCAAGCAGTTCCCGTACGCAGGGCAGTTTGACCGCTGTG
ACTGCGCGCCGGAGTTCAAGGGCGTCTTCTGCAACAAGGTGGCGGCGGCG
ACGGCGACATAAGCGAATGCTGCGGTGCTGGAGGCACGATTGCAGTGGTG
CGGCAGAGTATCGGCCGCTTTCTGGTGGAGTTGTTGGGGTGAGACAGGCA
GTCATCAACATCACCTAGCTGTTCGGGGGATCGGCGCTCAGTGATTGTTT
GTAGACACGTGTGGTTGCGACGGCTAACTAGAGTGAAAGGCCTGGTGTGG
TGAGACACAGTGTCCA
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protein sequence of jgi.p|Trimin1|352376

>Trimin1|352376|estExt_Genemark1.C_Ctg_1170077 ID=Trimin1|352376|estExt_Genemark1.C_Ctg_1170077|Name=jgi.p|Trimin1|352376|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=254bp
MAEALKAPPKCQYEEDQCGARWKTGADEYNPVQQTPYTTCCQGVVFGQSA
CKALPIQSDNTWGTACFPVNDKNCLNGNLECEKEIYAFTPFGSTRNKDPY
SKHYGSTCVARVQCAKGQDACGRSKKADSILETADNTCCPCSTKCYTVHT
DGGGYKTKCLDCAVPCGRDYVDKPGIDTQCCLPRQTCIPSVYGAAEPNTT
HCAYDFPCSKDLCKNGGKCRVKQFPYAGQFDRCDCAPEFKGVFCNKVAAA
TAT*
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mRNA from alignment at Contig_117:395377..397658-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5128 ID=mRNA_5128|Name=jgi.p|Trimin1|352376|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2282bp|location=Sequence derived from alignment at Contig_117:395377..397658- (Tribonema minus UTEX_B_3156 )
ATGGCAGAGGCTCTCAAGGCGCCTCCAAAGTGCCAGTATGAGGAGGATCA
GTGCGGGGCACGCTGGAAAACTGGCGCTGATGAGTACAACCCGGTGCAGC
AGACGCCCTACACCACCTGTTGCCAAGGCGTGGTGTTCGGCCAAAGTGCC
TGCAAGGTCAGCCCTGTCTGACTGTGTGCTACACACCACATTCAAATGTG
GACTTGTTGAGTAGAGATCTGCCCCATGGCTTTCGAGCATCGGTGATATG
CAGAACTGCTGTCTGTTACTATGCGTCAGGACTTCAATCACCAAATTATC
CAGCAAGTCAAATGTTCAACGCTCACTGCAATTTCATGTGCATCGCCACT
TGCAATAGATATAAAATGAGAGGAGTTTGTGTTGCTCTGCCGCCTTGTGT
TCGGTCTCACCAGTCCAGTCAGCTACTACAGGTGTAGTGCATGTTGCAGC
AAAAGCACCTCTTTCTGAAGCCTGCATCTTCAACTGTGAAGGTTCACCTG
CTCACTTGCATGCCTCGCAGGCACTGCCCATCCAGAGCGATAACACATGG
GGCACCGCGTGCTTTCCGGTCAACGACAAGAACTGTCTGAATGGCAACTT
GGAGTGCGAGAAGGAAATCTATGCATTCACGCCCTTTGGCTCGACTCGCA
ATAAAGTGCGCTGCAAAGTAGCGACTCATGACTGCGTTTAGGACCCGTAC
TCCAAGCACTATGGCTCAACGTGAGTGCGGAAGGCTATCCATTCGCAGGT
AGCACGATAACACGCGTACATGCGTCCACATACCTGATAGTCGTGTCACA
TGACAACTTAACCTAGTTGCGCAAGCGTGCGTTGACAACCATTATTGCAG
AAGAAGCCTTCAGGCTCGCTGTGTCGTGAGCACACTGCACCCAGACGGCA
ATCTCAGACAAGGAAGTGGCTAGCCACAGCTGCCATGTTTGCTGACTCGC
GGCGTCTGCCGAAGAGCGCATGATTGCCTTCATGTGTTCTGAGGTTTTTA
CCAATAATGACCACGTGTTCTGAGTTTATGTTGCACCAAACCGAACCAGC
AGTCCTCAACAAAAGCTTATAATAGCATGCATCATGGCAATGGCACAATT
GGGGACATGGACATTGCTGTGTGAGGGTATAATGTGTTATAGTCGCGCTT
ATTGAGATCTGCATGCGAGAAATTGCCAACATCTGAGCTCGCTCGTCATC
CCTGAACTGCCAAAAGTGATGCAGGAGGTGATGTGCCGGTTCATCACACC
AACATTAGTGATACTCGTCATGTGTCTCCTGTGCAATATAGTCTAGGGAA
CAGCGGTGCATAATCTTGTTGTTGTCATAGCACTGCTTGTGCATGGCGGC
GACGATGGGGACAATTGATGGGCTTATGTCGTCAGGGTGCCCAATTCTAG
TGCGCAGACTGGCGGCAGCGTGCAGCACATCAAACAACAGCAGTGCCCAG
ATTTTGACAGGAGAGAATTGCTGGTGTTGTTGCAATCAAGGACAGGCATC
CTCATCCCAATGGATTCACTCGCTGCGCAGAGATGTTGCCCAGCACATGC
TCTTGCACCGCTGGCACCTGAAACGTGTGGTATACAATGCCGGCTCTGTG
CACTAACTCTCCGCTCTTCTCCGCTCCGCTCGCCAGCTGCGTGGCCAGAG
TGCAGTGCGCCAAGGGCCAGGACGCATGCGGCCGCAGCAAGAAGGCCGAC
TCCATCCTGGAAACCGCAGACAACACGTGCTGCCCGTGCAGTACCAAGTG
CTACACCGTACACACGGACGGCGGCGGCTACAAGACCAAGTGCCTTGACT
GTGCTGTGCCATGTGGCCGCGACTACGTCGACAAGCCCGGCATTGACACG
CAGTGCTGCCTGCCGCGCCAGACCTGCATACCGTCTGTATACGGCGCCGC
AGAGCCCAACACGACGCACTGCGCGTACGACTTCCCCTGCAGCAAGGACT
TGTGCAAGAACGGCGGCAAGTGCCGCGTCAAGCAGTTCCCGTACGCAGGG
CAGTTTGACCGCTGTGACTGCGCGCCGGAGTTCAAGGGCGTCTTCTGCAA
CAAGGTGGCGGCGGCGACGGCGACATAAGCGAATGCTGCGGTGCTGGAGG
CACGATTGCAGTGGTGCGGCAGAGTATCGGCCGCTTTCTGGTGGAGTTGT
TGGGGTGAGACAGGCAGTCATCAACATCACCTAGCTGTTCGGGGGATCGG
CGCTCAGTGATTGTTTGTAGACACGTGTGGTTGCGACGGCTAACTAGAGT
GAAAGGCCTGGTGTGGTGAGACACAGTGTCCA
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Coding sequence (CDS) from alignment at Contig_117:395377..397658-

>mRNA_5128 ID=mRNA_5128|Name=jgi.p|Trimin1|352376|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=762bp|location=Sequence derived from alignment at Contig_117:395377..397658- (Tribonema minus UTEX_B_3156 )
ATGGCAGAGGCTCTCAAGGCGCCTCCAAAGTGCCAGTATGAGGAGGATCA
GTGCGGGGCACGCTGGAAAACTGGCGCTGATGAGTACAACCCGGTGCAGC
AGACGCCCTACACCACCTGTTGCCAAGGCGTGGTGTTCGGCCAAAGTGCC
TGCAAGGCACTGCCCATCCAGAGCGATAACACATGGGGCACCGCGTGCTT
TCCGGTCAACGACAAGAACTGTCTGAATGGCAACTTGGAGTGCGAGAAGG
AAATCTATGCATTCACGCCCTTTGGCTCGACTCGCAATAAAGACCCGTAC
TCCAAGCACTATGGCTCAACCTGCGTGGCCAGAGTGCAGTGCGCCAAGGG
CCAGGACGCATGCGGCCGCAGCAAGAAGGCCGACTCCATCCTGGAAACCG
CAGACAACACGTGCTGCCCGTGCAGTACCAAGTGCTACACCGTACACACG
GACGGCGGCGGCTACAAGACCAAGTGCCTTGACTGTGCTGTGCCATGTGG
CCGCGACTACGTCGACAAGCCCGGCATTGACACGCAGTGCTGCCTGCCGC
GCCAGACCTGCATACCGTCTGTATACGGCGCCGCAGAGCCCAACACGACG
CACTGCGCGTACGACTTCCCCTGCAGCAAGGACTTGTGCAAGAACGGCGG
CAAGTGCCGCGTCAAGCAGTTCCCGTACGCAGGGCAGTTTGACCGCTGTG
ACTGCGCGCCGGAGTTCAAGGGCGTCTTCTGCAACAAGGTGGCGGCGGCG
ACGGCGACATAA
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