Trimin1|351992|estExt_Genemark1.C_Ctg_1050012 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351992
Unique NameTrimin1|351992|estExt_Genemark1.C_Ctg_1050012
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length610
Homology
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BLAST of jgi.p|Trimin1|351992 vs. uniprot
Match: A0A835ZD73_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD73_9STRA)

HSP 1 Score: 1023 bits (2644), Expect = 0.000e+0
Identity = 609/609 (100.00%), Postives = 609/609 (100.00%), Query Frame = 0 
Query:    1 MRHCIIKVTFPLDDDGMHVFNDEILWDLLSDGAATALDFAITCARRYGLTAEQTAALAGDVQAQLDRHLARVPQSAQQRCPTLGTYGRTRTSGGGGFLERGVGARGSRPRTMEVEEYGPPLAEADLDSYVARLKIELQPLNRPAQYFSENTCHICHNRKKDVFNCCSTGKNKHNYCGFHVISKFGIPSVAALRADPSLWTECPACALVCPCTACNKLLRDSVRRDRKLNPHLYPETVEATPANAAAAXXXXXXXXXXXXXXXXXXPPXATAPPAXXXXXXXXXPQPLPPXXXXXXXXXXXXXSSAPRQQQPMVRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXERDEVWRDEGLQFCVVCDGSRAPNVRCCACPRAFHTRCAKPAPXXXXXXXXXGSGAWRCCDCEGPLRGGIAPPQFQGTNHLRACRALLSFMRDSAFANNVXXXXXXXXXXXXXXXXXXXXXXNFTHPVTADDFGAAAAAEWLRYERVVPPDKRMDLSTVLNKLNSHQYGVEGDGGAGMRHFVRDMRQIWVACWTFNEYGSALYRIAAILSHCVEAWIAKTLLPMLRPDCRAAIQALPPQPQHAWAPPALAAAAAEPIAKRMRHH 609
            MRHCIIKVTFPLDDDGMHVFNDEILWDLLSDGAATALDFAITCARRYGLTAEQTAALAGDVQAQLDRHLARVPQSAQQRCPTLGTYGRTRTSGGGGFLERGVGARGSRPRTMEVEEYGPPLAEADLDSYVARLKIELQPLNRPAQYFSENTCHICHNRKKDVFNCCSTGKNKHNYCGFHVISKFGIPSVAALRADPSLWTECPACALVCPCTACNKLLRDSVRRDRKLNPHLYPETVEATPANAAAAXXXXXXXXXXXXXXXXXXPPXATAPPAXXXXXXXXXPQPLPPXXXXXXXXXXXXXSSAPRQQQPMVRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXERDEVWRDEGLQFCVVCDGSRAPNVRCCACPRAFHTRCAKPAPXXXXXXXXXGSGAWRCCDCEGPLRGGIAPPQFQGTNHLRACRALLSFMRDSAFANNVXXXXXXXXXXXXXXXXXXXXXXNFTHPVTADDFGAAAAAEWLRYERVVPPDKRMDLSTVLNKLNSHQYGVEGDGGAGMRHFVRDMRQIWVACWTFNEYGSALYRIAAILSHCVEAWIAKTLLPMLRPDCRAAIQALPPQPQHAWAPPALAAAAAEPIAKRMRHH
Sbjct:    1 MRHCIIKVTFPLDDDGMHVFNDEILWDLLSDGAATALDFAITCARRYGLTAEQTAALAGDVQAQLDRHLARVPQSAQQRCPTLGTYGRTRTSGGGGFLERGVGARGSRPRTMEVEEYGPPLAEADLDSYVARLKIELQPLNRPAQYFSENTCHICHNRKKDVFNCCSTGKNKHNYCGFHVISKFGIPSVAALRADPSLWTECPACALVCPCTACNKLLRDSVRRDRKLNPHLYPETVEATPANAAAAXXXXXXXXXXXXXXXXXXPPXATAPPAXXXXXXXXXPQPLPPXXXXXXXXXXXXXSSAPRQQQPMVRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXERDEVWRDEGLQFCVVCDGSRAPNVRCCACPRAFHTRCAKPAPXXXXXXXXXGSGAWRCCDCEGPLRGGIAPPQFQGTNHLRACRALLSFMRDSAFANNVXXXXXXXXXXXXXXXXXXXXXXNFTHPVTADDFGAAAAAEWLRYERVVPPDKRMDLSTVLNKLNSHQYGVEGDGGAGMRHFVRDMRQIWVACWTFNEYGSALYRIAAILSHCVEAWIAKTLLPMLRPDCRAAIQALPPQPQHAWAPPALAAAAAEPIAKRMRHH 609
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351992 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZD73_9STRA0.000e+0100.00PHD-type domain-containing protein n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 358..408
e-value: 0.0022
score: 27.2
IPR001487BromodomainSMARTSM00297bromo_6coord: 446..567
e-value: 9.4E-4
score: 21.0
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 453..552
e-value: 1.0E-8
score: 35.1
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 440..567
e-value: 1.1E-14
score: 55.9
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 449..564
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 321..409
e-value: 7.8E-8
score: 34.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 280..333
NoneNo IPR availablePANTHERPTHR45725FORMIN HOMOLOGY 2 FAMILY MEMBERcoord: 39..310
NoneNo IPR availableCDDcd04369Bromodomaincoord: 449..562
e-value: 3.09479E-12
score: 61.2342
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 356..410
score: 8.5911
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 351..408

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:71179..81733 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351992mRNA_12714Tribonema minus UTEX_B_3156 mRNAContig_105 71152..81733 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351992|estExt_Genemark1.C_Ctg_1050012 ID=Trimin1|351992|estExt_Genemark1.C_Ctg_1050012|Name=jgi.p|Trimin1|351992|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=610bp
MRHCIIKVTFPLDDDGMHVFNDEILWDLLSDGAATALDFAITCARRYGLT
AEQTAALAGDVQAQLDRHLARVPQSAQQRCPTLGTYGRTRTSGGGGFLER
GVGARGSRPRTMEVEEYGPPLAEADLDSYVARLKIELQPLNRPAQYFSEN
TCHICHNRKKDVFNCCSTGKNKHNYCGFHVISKFGIPSVAALRADPSLWT
ECPACALVCPCTACNKLLRDSVRRDRKLNPHLYPETVEATPANAAAAAPA
VAAAATPAAAAAATAPPAATAPPAAAAAAPAAAPQPLPPAPAAATAPPAA
ASSSAPRQQQPMVRGGRGRGRGRGSGRPRAAAAAAAPAAAAAAAAERDEV
WRDEGLQFCVVCDGSRAPNVRCCACPRAFHTRCAKPAPPPPALLLGGGSG
AWRCCDCEGPLRGGIAPPQFQGTNHLRACRALLSFMRDSAFANNVGTNHL
RACRTLLKFMTDSALADNFTHPVTADDFGAAAAAEWLRYERVVPPDKRMD
LSTVLNKLNSHQYGVEGDGGAGMRHFVRDMRQIWVACWTFNEYGSALYRI
AAILSHCVEAWIAKTLLPMLRPDCRAAIQALPPQPQHAWAPPALAAAAAE
PIAKRMRHH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR001487Bromodomain
IPR036427Bromodomain-like_sf
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD