Trimin1|351985|estExt_Genemark1.C_Ctg_1050003 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351985
Unique NameTrimin1|351985|estExt_Genemark1.C_Ctg_1050003
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length614
Homology
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: A0A836CQT9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQT9_9STRA)

HSP 1 Score: 544 bits (1402), Expect = 7.280e-185
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0
Query:    1 MFRIAARRLLPPSCTYTHSATGLAVAGLRHISISARSCSAPPAVDTGVGVASQQQEQHQSPSEAVGXXXXXXXXXXXXXPKPRRGVVHPILEDDSDDEKWLPKRIHGMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAPQFAQTVIGDTVGQCELLRAEAHAGSGADAAFATMTVDLNVASRALAMVPPLAMRSGGLSPTAALNSKHYTMSLAAAAGHVPVLECLARDGFFLHWAVCEAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALELAARDAAVGARQRLPNXXXXXXXXXXXXXXXXXXRACASAAEH 435
            MFRIAARRLLPPSCTYTHSATGLAVAGLRHISISARSCSAPPAVDTGVGVASQQQEQHQSPSEAVGXXXXXXXXXXXXXPKPRRGVVHPILEDDSDDEKWLPKRIHGMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAPQFAQTVIGDTVGQCELLRAEAHAGSGADAAFATMTVDLNVASRALAMVPPLAMRSGGLSPTAALNSKHYTMSLAAAAGHVPVLECLARDGFFLHWAVCEAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALELAARDAAVGARQRLPNXXXXXXXXXXXXXXXXXXRACASAAEH
Sbjct:    1 MFRIAARRLLPPSCTYTHSATGLAVAGLRHISISARSCSAPPAVDTGVGVASQQQEQHQSPSEAVGXXXXXXXXXXXXXPKPRRGVVHPILEDDSDDEKWLPKRIHGMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAPQFAQTVIGDTVGQCELLRAEAHAGSGADAAFATMTVDLNVASRALAMVPPLAMRSGGLSPTAALNSKHYTMSLAAAAGHVPVLECLARDGFFLHWAVCEAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALELAARDAAVGARQRLPNXXXXXXXXXXXXXXXXXXRACASAAEH 435          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: B8C9D7_THAPS (RT17, ribosomal protein 17 mitochondrial small ribosomal subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9D7_THAPS)

HSP 1 Score: 96.7 bits (239), Expect = 1.050e-20
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0
Query:  107 GMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVI 180
            G  +G VVS KM KT+NV+V R ++VPKY  R    +KF AHDEHE+CN GD V+IVPC+++SRHKHF + E+I
Sbjct:    6 GALVGKVVSDKMDKTVNVAVDRYRIVPKYRKRLRYTKKFMAHDEHEVCNMGDLVMIVPCQKISRHKHFMVREII 79          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: A0A6V2J805_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2J805_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.040e-20
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 0
Query:  107 GMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAPQ 185
            G  +G VVS KM KT+NV+V R ++VPKYG R+   RKF AHDE E+C+ GD V+IVPC++LSRHKHF + E+I+   Q
Sbjct:  140 GSMVGTVVSDKMQKTVNVAVDRYRIVPKYGKRKKYTRKFMAHDEKEVCSVGDLVMIVPCQKLSRHKHFMVKEIIRAKGQ 218          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: A0A6U2EUR8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2EUR8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.760e-20
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 0
Query:  103 KRIHGMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIK 181
            K++ G  +G VVS KMAKT+NV+V R ++VPKY  RR   +KF AHDE E+CN GD V+IVPC+R+S++KHF + E+I+
Sbjct:   98 KKVKGALVGKVVSDKMAKTVNVAVDRYRIVPKYRKRRKYTKKFMAHDEKEVCNLGDVVMIVPCQRISKNKHFMVREIIR 176          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: K0TME0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TME0_THAOC)

HSP 1 Score: 98.2 bits (243), Expect = 9.760e-20
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0
Query:  107 GMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAPQ 185
            G  +G VVS KM KT  V+V R ++VPKY  R    +KFFAHDEHE+CN GD V+IVPC+++SRHKHF + E+I+   Q
Sbjct:  128 GALVGTVVSDKMQKTATVAVDRYRIVPKYRKRLRYTKKFFAHDEHEVCNTGDLVMIVPCQKISRHKHFMVREIIRAKGQ 206          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: A0A7S2KFL0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KFL0_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.270e-19
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 0
Query:  107 GMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKK 182
            G  +G VVSTKM KT+NV+V+R ++VPKY  R    RKF AHDEHE CNDGD V+I PC+++S+ KHF + ++++K
Sbjct:  127 GALVGKVVSTKMQKTVNVAVERYRIVPKYRKRLRYTRKFMAHDEHEECNDGDVVMITPCQKISKMKHFSVAQILRK 202          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: A0A6U3BC37_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BC37_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.600e-19
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 0
Query:   88 HPILEDD------------SDDEKW-----LPKRI-HGMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIK 181
            HPI ++D            SD   W      P++   G  +G VVSTKM KT+NV+V R +VV ++G R+   RKF AHDE E+ N+GD V+I+PC +LS+ KHF L E+++
Sbjct:    4 HPIFKEDVGTMTNEELMETSDIPGWDLVSTAPRKFPRGSLVGTVVSTKMQKTVNVAVDRYRVVDRFGKRQRYTRKFMAHDEEEVANEGDLVLILPCHKLSKRKHFLLSEILR 115          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: A0A7S3JUZ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUZ4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.440e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 0
Query:   98 EKW----LPKRI-HGMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAP 184
            +KW    +P+++  G   G+V S KM K+I V V+R +++PKYG +    R F AHDEHE C  GDRV+I PCR+LS+HKHF L  ++++AP
Sbjct:   23 KKWPLPAIPEKLPRGSLTGIVKSDKMDKSIVVRVRRSKIIPKYGWKVNYDRSFKAHDEHEECKIGDRVIIFPCRKLSKHKHFMLHSIVRRAP 114          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: A0A8J9X2N0_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X2N0_PHATR)

HSP 1 Score: 88.2 bits (217), Expect = 9.720e-18
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 0
Query:  110 IGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAPQ 185
            +G VVS KM KTINV+V+R ++VPK   +    RKF AHDE E+ N GD V+I PC RLS+HKHF L E+I+   Q
Sbjct:    2 LGTVVSDKMNKTINVAVKRYRLVPKIRKKMTYTRKFMAHDEKEVANIGDLVMITPCHRLSKHKHFMLREIIRPKGQ 77          
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Match: A0A7S3P821_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P821_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-17
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0
Query:  107 GMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDEHEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAPQFA 187
            G  +G VVST+M KT+NV+V R ++VPK   R+   RKFFAHDE+E+ N GD V+I PC R+S+ KHF L E+I+   Q +
Sbjct:  102 GALVGTVVSTRMQKTVNVAVDRYRIVPKIRKRQRYTRKFFAHDENEVANMGDLVMITPCHRISKFKHFMLREIIRPKGQLS 182          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351985 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CQT9_9STRA7.280e-185100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8C9D7_THAPS1.050e-2058.11RT17, ribosomal protein 17 mitochondrial small rib... [more]
A0A6V2J805_9STRA2.040e-2056.96Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6U2EUR8_9STRA2.760e-2055.70Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
K0TME0_THAOC9.760e-2055.70Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2KFL0_9STRA3.270e-1955.26Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6U3BC37_9STRA7.600e-1942.86Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3JUZ4_9STRA7.440e-1847.83Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J9X2N0_PHATR9.720e-1855.26Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S3P821_9STRA1.000e-1751.85Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 456..611
e-value: 4.2E-6
score: 28.2
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 241..455
e-value: 3.0E-8
score: 35.1
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 309..606
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 107..196
e-value: 3.4E-24
score: 86.6
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 109..188
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 111..178
e-value: 1.3E-21
score: 76.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..93
NoneNo IPR availablePANTHERPTHR46586ANKYRIN REPEAT-CONTAINING PROTEINcoord: 513..612
coord: 337..531
coord: 229..386

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:7668..13588 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351985mRNA_12708Tribonema minus UTEX_B_3156 mRNAContig_105 7668..13623 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351985|estExt_Genemark1.C_Ctg_1050003 ID=Trimin1|351985|estExt_Genemark1.C_Ctg_1050003|Name=jgi.p|Trimin1|351985|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=614bp
MFRIAARRLLPPSCTYTHSATGLAVAGLRHISISARSCSAPPAVDTGVGV
ASQQQEQHQSPSEAVGDTGAGATSQQEEQPKPRRGVVHPILEDDSDDEKW
LPKRIHGMKIGVVVSTKMAKTINVSVQRVQVVPKYGNRRIMHRKFFAHDE
HEICNDGDRVVIVPCRRLSRHKHFRLLEVIKKAPQFAQTVIGDTVGQCEL
LRAEAHAGSGADAAFATMTVDLNVASRALAMVPPLAMRSGGLSPTAALNS
KHYTMSLAAAAGHVPVLECLARDGFFLHWAVCEAAARGGCLAALQWLRRS
GLLWSVSTCRAAAGGGHLEVLQWARANGAPWGALACSFVARGGHLAVLRW
LRASGAPWDSQTCYNAGKAGHLEVLRWARDNGCPWDESTALELAARDAAV
GARQRLPNGHLAVLQLLCANGCPWDERACASAAEHGHLGVLQWARASGCP
WDVCTCAAAAMNGHLEALQWARAAGCPWDKQACALAAWSGHLATLRWLRA
NGCPWDARTCAEAAESGHLALLRWARAAGCLWDERTCSEAARGGHLAVLQ
WARAAGCPWSERACAAAAGAARMSVLRWLRASGCPWDASACHAAEEKGGD
EVVRWLRANGCPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR012340NA-bd_OB-fold
IPR000266Ribosomal_S17/S11