Trimin1|351942|estExt_Genemark1.C_Ctg_1040019 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351942
Unique NameTrimin1|351942|estExt_Genemark1.C_Ctg_1040019
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length968
Homology
BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: A0A836CQW4_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQW4_9STRA)

HSP 1 Score: 1075 bits (2780), Expect = 0.000e+0
Identity = 967/967 (100.00%), Postives = 967/967 (100.00%), Query Frame = 0
Query:    1 MPTSEEVKELLTRAAAAQEKSKEIFSSWCWCMQRMSLGIALACAYRAYMCHTDSTLAAPALQGGPAAHQFALKSNLAGIAASIAAAYWAYSPWPGLDRRLALVLLLGAYEILLYVRLVAAASLTKGSVVRLHAFPLPVVFVGLCCIGTVFMSKMRREADGVLAREAAMASEVIFMDDTRAVTGTSRLAMDPATLYARHGAGADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLSLSPLPXXXXXXXXXXXXRAESCGGGVVLRRHGSGSSRGALWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGGGSDVGAASAAELSARYVXXXXXXXXXXXXXXXXXXXXXTRWQQQQQQQQRGAFSRGIAEDAGAAPAPVVKTRYQAMQRLAAPSVDTGALPSAALRARWPQQQQRSTTIXXXXXXXXXXXXXXXXXRYAALMALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXAAAXXXVSADAGAEGTSSLRQRWQSITGDSSISGSDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAAAAESATAASDNVAAEGMGALQRRWLSNGAAAARAVDVGSARVADLQQRWREATADDTVGACSAAALRRRWQAAAAAASADXXXXXXXXXXXXXXXXXXAEECVGGXRXXALQRRWREALRKPGVADXXXXXXXXXXXXXXXXAACDSSSVXXXGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSTGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAGGALLLDCXXXXXXXXXXXXQAASALSQ 967
            MPTSEEVKELLTRAAAAQEKSKEIFSSWCWCMQRMSLGIALACAYRAYMCHTDSTLAAPALQGGPAAHQFALKSNLAGIAASIAAAYWAYSPWPGLDRRLALVLLLGAYEILLYVRLVAAASLTKGSVVRLHAFPLPVVFVGLCCIGTVFMSKMRREADGVLAREAAMASEVIFMDDTRAVTGTSRLAMDPATLYARHGAGADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLSLSPLPXXXXXXXXXXXXRAESCGGGVVLRRHGSGSSRGALWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGGGSDVGAASAAELSARYVXXXXXXXXXXXXXXXXXXXXXTRWQQQQQQQQRGAFSRGIAEDAGAAPAPVVKTRYQAMQRLAAPSVDTGALPSAALRARWPQQQQRSTTIXXXXXXXXXXXXXXXXXRYAALMALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXAAAXXXVSADAGAEGTSSLRQRWQSITGDSSISGSDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAAAAESATAASDNVAAEGMGALQRRWLSNGAAAARAVDVGSARVADLQQRWREATADDTVGACSAAALRRRWQAAAAAASADXXXXXXXXXXXXXXXXXXAEECVGGXRXXALQRRWREALRKPGVADXXXXXXXXXXXXXXXXAACDSSSVXXXGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSTGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAGGALLLDCXXXXXXXXXXXXQAASALSQ
Sbjct:    1 MPTSEEVKELLTRAAAAQEKSKEIFSSWCWCMQRMSLGIALACAYRAYMCHTDSTLAAPALQGGPAAHQFALKSNLAGIAASIAAAYWAYSPWPGLDRRLALVLLLGAYEILLYVRLVAAASLTKGSVVRLHAFPLPVVFVGLCCIGTVFMSKMRREADGVLAREAAMASEVIFMDDTRAVTGTSRLAMDPATLYARHGAGADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLSLSPLPXXXXXXXXXXXXRAESCGGGVVLRRHGSGSSRGALWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGGGSDVGAASAAELSARYVXXXXXXXXXXXXXXXXXXXXXTRWQQQQQQQQRGAFSRGIAEDAGAAPAPVVKTRYQAMQRLAAPSVDTGALPSAALRARWPQQQQRSTTIXXXXXXXXXXXXXXXXXRYAALMALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXAAAXXXVSADAGAEGTSSLRQRWQSITGDSSISGSDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAAAAESATAASDNVAAEGMGALQRRWLSNGAAAARAVDVGSARVADLQQRWREATADDTVGACSAAALRRRWQAAAAAASADXXXXXXXXXXXXXXXXXXAEECVGGXRXXALQRRWREALRKPGVADXXXXXXXXXXXXXXXXAACDSSSVXXXGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSTGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAGGALLLDCXXXXXXXXXXXXQAASALSQ 967          
BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: A0A6H5JF26_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF26_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.940e-27
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 0
Query:  207 GEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAP--------SSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLP 314
            G    D FI++RLND TSYF  WFCK +R+++            + CPICLD+ T SI+LQCGH+FCRSCL  SAA N T+CALCRREQ + P++LR +FD++RM NLA+RL  LP
Sbjct:   15 GIAPADVFILSRLNDTTSYFFAWFCKKYRIQIGPPRGLGGKEENTRCPICLDSCTKSIELQCGHSFCRSCLIRSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAILP 130          
BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: D7G6B8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B8_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 9.170e-27
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0
Query:  207 GEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTA--------PSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRL 310
            G    D FI++RLND TSYF TWFCK +R+++            + CPICLD+ T SI+LQCGH+FCRSCL  SAA N T+CALCRREQ + P++LR +FD++RM NLA+RL
Sbjct:   15 GIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRL 126          
BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: A0A7S3XVA3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA3_HETAK)

HSP 1 Score: 123 bits (308), Expect = 2.540e-25
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 0
Query:  169 ASEVIFMDDTRAVTGTSRLAMDPATLYARHGAGADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLN---TAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLS 320
            ASEV F DD      +SR  ++P  +      GAD  KG+   D F+V+R+NDE+SYF TWFCK F  +L    T   +CPICL++  +SI+LQCGH+FCR CL  SA    + C LCR    L+P+ LR+ F+ +R+ NL RR Q++   ++ S
Sbjct:    5 ASEVRFTDDIH--VHSSRPVLNPEDIV-----GADFSKGKSG-DVFLVSRMNDESSYFYTWFCKRFEFKLKANKTYKENCPICLESELHSIELQCGHSFCRGCLTHSAEMKISCCPLCRANICLNPEVLRKNFEDQRIRNLMRRFQNVDRQKSFS 151          
BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: A0A4D9CMH2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CMH2_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.340e-24
Identity = 67/157 (42.68%), Postives = 87/157 (55.41%), Query Frame = 0
Query:  168 MASEVIFMDD---------TRAVTGTSRLAMDPATLYARHGA--GADMPKGEGAL---DNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRL 310
            +AS + F DD         TR +  T   +  P   +A   A   A +  G+      D F ++RLND T+YF  W CK + L +   P SCPICL+T  NSIQL CGH FCR CL A+A    ++CALCR+   L PD LRQQF  +R AN++ RL
Sbjct:   11 VASNIHFSDDMSLPRFGTSTRLLAATCSCSSTPCAAHAATSADQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRL 167          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351942 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CQW4_9STRA0.000e+0100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5JF26_9PHAE5.940e-2755.17RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6B8_ECTSI9.170e-2756.25RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3XVA3_HETAK2.540e-2543.87Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A4D9CMH2_9STRA4.340e-2442.68RING-type domain-containing protein n=2 Tax=Monodo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 245..283
e-value: 2.3E-6
score: 37.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 245..284
score: 11.574592
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 236..321
e-value: 8.6E-12
score: 47.1
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 245..269
e-value: 1.1E-5
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..337
NoneNo IPR availableCDDcd16449RING-HCcoord: 245..283
e-value: 1.55071E-9
score: 52.0845
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 238..290
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 260..269

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:105296..111224 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351942mRNA_10181Tribonema minus UTEX_B_3156 mRNAContig_104 105121..111261 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351942|estExt_Genemark1.C_Ctg_1040019 ID=Trimin1|351942|estExt_Genemark1.C_Ctg_1040019|Name=jgi.p|Trimin1|351942|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=968bp
MPTSEEVKELLTRAAAAQEKSKEIFSSWCWCMQRMSLGIALACAYRAYMC
HTDSTLAAPALQGGPAAHQFALKSNLAGIAASIAAAYWAYSPWPGLDRRL
ALVLLLGAYEILLYVRLVAAASLTKGSVVRLHAFPLPVVFVGLCCIGTVF
MSKMRREADGVLAREAAMASEVIFMDDTRAVTGTSRLAMDPATLYARHGA
GADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLD
TVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQ
RRMANLARRLQSLPLSQTLSLSPLPPPPPLPRQQNRARAESCGGGVVLRR
HGSGSSRGALWHGGRAAAAGAAAALLSADEEKDSCCSRKSRSSSGVCSRR
GSFDAEEVLLAAAEGEAAAAAAAASLDGGGSDVGAASAAELSARYVAAAQ
LAALSADVGALSAADLATRWQQQQQQQQRGAFSRGIAEDAGAAPAPVVKT
RYQAMQRLAAPSVDTGALPSAALRARWPQQQQRSTTIAAASNDVGACSSA
SLAARYAALMALAAPAADLGGLASAALRARWWQQRAAAAADTSVGASSRA
DLASRWRRGSAAAAAAAAAAVSADAGAEGTSSLRQRWQSITGDSSISGSD
SATLKRRWQTVSCAATAGGAAEAEEQDAEWLRQCCQSSVGAATGSELCRR
WNAAAAAESATAASDNVAAEGMGALQRRWLSNGAAAARAVDVGSARVADL
QQRWREATADDTVGACSAAALRRRWQAAAAAASADVGATDGAGLQQRWRA
AAAAEECVGGARSGALQRRWREALRKPGVADVGAQRTVDLKRRWHEAAAC
DSSSVGAAGSGELQQRWTALATASRDDIGDSDAAELAQQWQRSTGDDDSV
GVANCAQLEARWHAYAAECGADVGGVSKAELQQRWAEAAGGALLLDCGAA
SQQHLQQRWQAASALSQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS