mRNA_10181 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351942
Unique Name	mRNA_10181
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: A0A836CQW4_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQW4_9STRA)

HSP 1 Score: 1075 bits (2779), Expect = 0.000e+0
Identity = 966/967 (99.90%), Postives = 966/967 (99.90%), Query Frame = 2

Query:   38 MPTSEEVKELLTRAAAAQEKSKEIFSSWCWCMQRMSLGIALACAYRAYMCHTDSTLAAPALQGGPAAHQFALKSNLAGIAASIAAAYWAYSPWPGLDRRLALVLLLGAYEILLYVRLVAAASLTKGSVVRLHAFPLPVVFVGLCCIGTVFMSKMRREADGVLAREAAMASEVIFMDDTRAVTGTSRLAMDPATLYARHGAGADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLSLSPLPXXXXXXXXXXXXRAESCGGGVVLRRHGSGSSRGALWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGGGSDVGAASAAELSARYVXXXXXXXXXXXXXXXXXXXXXTRWQQQQQQQQRGAFSRGIAEDAGAAPAPVVKTRYQAMQRLAAPSVDTGALPSAALRARWPQQQQRSTTIXXXXXXXXXXXXXXXXXRYAALMALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXAAAXXXVSADAGAEGTSSLRQRWQSITGDSSISGSDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAAAAESATAASDNVAAEGMGALQRRWLSNGAAAARAVDVGSARVADLQQRWREATADDTVGACSAAALRRRWQAAAAAASADXXXXXXXXXXXXXXXXXXAEECVGGXRXXALQRRWREALRKPGVADXXXXXXXXXXXXXXXXAACDSSSVXXXGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSTGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAGGALLLDCXXXXXXXXXXXXXAASALSQ 2938
            MPTSEEVKELLTRAAAAQEKSKEIFSSWCWCMQRMSLGIALACAYRAYMCHTDSTLAAPALQGGPAAHQFALKSNLAGIAASIAAAYWAYSPWPGLDRRLALVLLLGAYEILLYVRLVAAASLTKGSVVRLHAFPLPVVFVGLCCIGTVFMSKMRREADGVLAREAAMASEVIFMDDTRAVTGTSRLAMDPATLYARHGAGADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLSLSPLPXXXXXXXXXXXXRAESCGGGVVLRRHGSGSSRGALWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGGGSDVGAASAAELSARYVXXXXXXXXXXXXXXXXXXXXXTRWQQQQQQQQRGAFSRGIAEDAGAAPAPVVKTRYQAMQRLAAPSVDTGALPSAALRARWPQQQQRSTTIXXXXXXXXXXXXXXXXXRYAALMALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXAAAXXXVSADAGAEGTSSLRQRWQSITGDSSISGSDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAAAAESATAASDNVAAEGMGALQRRWLSNGAAAARAVDVGSARVADLQQRWREATADDTVGACSAAALRRRWQAAAAAASADXXXXXXXXXXXXXXXXXXAEECVGGXRXXALQRRWREALRKPGVADXXXXXXXXXXXXXXXXAACDSSSVXXXGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSTGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAGGALLLDCXXXXXXXXXXXX AASALSQ
Sbjct:    1 MPTSEEVKELLTRAAAAQEKSKEIFSSWCWCMQRMSLGIALACAYRAYMCHTDSTLAAPALQGGPAAHQFALKSNLAGIAASIAAAYWAYSPWPGLDRRLALVLLLGAYEILLYVRLVAAASLTKGSVVRLHAFPLPVVFVGLCCIGTVFMSKMRREADGVLAREAAMASEVIFMDDTRAVTGTSRLAMDPATLYARHGAGADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLSLSPLPXXXXXXXXXXXXRAESCGGGVVLRRHGSGSSRGALWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGGGSDVGAASAAELSARYVXXXXXXXXXXXXXXXXXXXXXTRWQQQQQQQQRGAFSRGIAEDAGAAPAPVVKTRYQAMQRLAAPSVDTGALPSAALRARWPQQQQRSTTIXXXXXXXXXXXXXXXXXRYAALMALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXAAAXXXVSADAGAEGTSSLRQRWQSITGDSSISGSDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAAAAESATAASDNVAAEGMGALQRRWLSNGAAAARAVDVGSARVADLQQRWREATADDTVGACSAAALRRRWQAAAAAASADXXXXXXXXXXXXXXXXXXAEECVGGXRXXALQRRWREALRKPGVADXXXXXXXXXXXXXXXXAACDSSSVXXXGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSTGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAGGALLLDCXXXXXXXXXXXXQAASALSQ 967

[Close]

BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: A0A6H5JF26_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF26_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.870e-27
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 2

Query:  656 GEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAP--------SSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLP 979
            G    D FI++RLND TSYF  WFCK +R+++            + CPICLD+ T SI+LQCGH+FCRSCL  SAA N T+CALCRREQ + P++LR +FD++RM NLA+RL  LP
Sbjct:   15 GIAPADVFILSRLNDTTSYFFAWFCKKYRIQIGPPRGLGGKEENTRCPICLDSCTKSIELQCGHSFCRSCLIRSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAILP 130

[Close]

BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: D7G6B8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B8_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.060e-26
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 2

Query:  656 GEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTA--------PSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRL 967
            G    D FI++RLND TSYF TWFCK +R+++            + CPICLD+ T SI+LQCGH+FCRSCL  SAA N T+CALCRREQ + P++LR +FD++RM NLA+RL
Sbjct:   15 GIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRL 126

[Close]

BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: A0A7S3XVA3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA3_HETAK)

HSP 1 Score: 123 bits (308), Expect = 2.880e-25
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 2

Query:  542 ASEVIFMDDTRAVTGTSRLAMDPATLYARHGAGADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLN---TAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLS 997
            ASEV F DD      +SR  ++P  +      GAD  KG+   D F+V+R+NDE+SYF TWFCK F  +L    T   +CPICL++  +SI+LQCGH+FCR CL  SA    + C LCR    L+P+ LR+ F+ +R+ NL RR Q++   ++ S
Sbjct:    5 ASEVRFTDDIH--VHSSRPVLNPEDIV-----GADFSKGKSG-DVFLVSRMNDESSYFYTWFCKRFEFKLKANKTYKENCPICLESELHSIELQCGHSFCRGCLTHSAEMKISCCPLCRANICLNPEVLRKNFEDQRIRNLMRRFQNVDRQKSFS 151

[Close]

BLAST of jgi.p|Trimin1|351942 vs. uniprot
Match: A0A4D9CMH2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CMH2_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.890e-24
Identity = 67/157 (42.68%), Postives = 87/157 (55.41%), Query Frame = 2

Query:  539 MASEVIFMDD---------TRAVTGTSRLAMDPATLYARHGA--GADMPKGEGAL---DNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRL 967
            +AS + F DD         TR +  T   +  P   +A   A   A +  G+      D F ++RLND T+YF  W CK + L +   P SCPICL+T  NSIQL CGH FCR CL A+A    ++CALCR+   L PD LRQQF  +R AN++ RL
Sbjct:   11 VASNIHFSDDMSLPRFGTSTRLLAATCSCSSTPCAAHAATSADQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRL 167

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351942 vs. uniprot

BLAST of jgi.p|Trimin1|351942 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A836CQW4_9STRA	0.000e+0	99.90	RING-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A6H5JF26_9PHAE	6.870e-27	55.17	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
D7G6B8_ECTSI	1.060e-26	56.25	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A7S3XVA3_HETAK	2.880e-25	43.87	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]
A0A4D9CMH2_9STRA	4.890e-24	42.68	RING-type domain-containing protein n=2 Tax=Monodo...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_104	contig	Contig_104:105121..111261 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351942\|estExt_Genemark1.C_Ctg_1040019
BRITE	ko00000,ko01000,ko03036,ko04121
KEGG ko	ko:K10695
EC	2.3.2.27
Description	Zinc finger, C3HC4 type (RING finger)
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2CZFN@1\|root,2SA6R@2759\|Eukaryota
Evalue	7.7e-06
Seed ortholog	55529.EKX52656
Hectar predicted targeting category	other localisation
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-10_001270.1
TranscriptId	352264
Track	FilteredModels1
ProteinId	351942

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351942	gene_10181	Tribonema minus UTEX_B_3156	gene	Contig_104 105121..111261 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351942	Trimin1\|351942\|estExt_Genemark1.C_Ctg_1040019	Tribonema minus UTEX_B_3156	polypeptide	Contig_104 105296..111224 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10181_5	exon_10181_5	Tribonema minus UTEX_B_3156	exon	Contig_104 105121..107338 -
exon_10181_4	exon_10181_4	Tribonema minus UTEX_B_3156	exon	Contig_104 107616..107805 -
exon_10181_3	exon_10181_3	Tribonema minus UTEX_B_3156	exon	Contig_104 108856..109034 -
exon_10181_2	exon_10181_2	Tribonema minus UTEX_B_3156	exon	Contig_104 109932..110357 -
exon_10181_1	exon_10181_1	Tribonema minus UTEX_B_3156	exon	Contig_104 111159..111261 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10181	UTR3_10181	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_104 105121..105295 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10181	CDS_10181	Tribonema minus UTEX_B_3156	CDS	Contig_104 111159..111224 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_10181	UTR5_10181	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_104 111225..111261 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_104:105121..111261-
coding sequence from alignment at Contig_104:105121..111261-

spliced messenger RNA

>mRNA_10181 ID=mRNA_10181|Name=jgi.p|Trimin1|351942|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3116bp|location=Sequence derived from alignment at Contig_104:105121..111261- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGACTGAGCGGCGGGTGCACCTGTAGGGGCGCGAAAATGCCTACTAGCG
AGGAGGTGAAGGAGCTGTTGACAAGAGCTGCAGCAGCTCAGGAGAAAAGC
AAGGAGATCTTCAGCAGCTGGTGCTGGTGCATGCAGCGCATGTCCCTGGG
CATAGCGCTCGCGTGCGCGTACAGAGCGTACATGTGCCACACGGACTCCA
CCCTCGCAGCGCCGGCACTACAGGGCGGTCCCGCAGCACACCAATTTGCG
CTTAAATCCAATCTGGCAGGCATAGCCGCCTCCATCGCTGCTGCTTACTG
GGCGTATTCGCCGTGGCCTGGCCTGGATCGGCGGCTAGCGCTGGTTCTGC
TACTGGGGGCGTATGAGATACTGCTGTATGTCAGGCTGGTGGCAGCAGCG
TCGCTGACAAAAGGCAGCGTGGTGCGGCTGCACGCGTTTCCGCTGCCTGT
CGTCTTTGTGGGGCTCTGCTGCATCGGCACGGTGTTCATGAGCAAGATGA
GGAGAGAGGCCGATGGTGTGCTGGCGCGCGAAGCTGCCATGGCGAGCGAG
GTGATTTTCATGGATGATACCCGGGCGGTGACAGGGACATCGCGGCTGGC
GATGGACCCTGCCACCCTGTATGCCAGGCATGGAGCAGGAGCTGACATGC
CGAAGGGGGAGGGGGCGCTGGACAATTTCATCGTGGCCAGGCTCAACGAT
GAGACCTCCTACTTCATGACGTGGTTCTGCAAGCACTTCCGCCTGCGCCT
CAACACTGCCCCCAGCTCCTGCCCCATCTGCCTGGACACTGTCACCAACA
GCATTCAGCTGCAGTGCGGCCACGCATTCTGCAGGAGCTGCCTCGCGGCC
AGCGCGGCATGCAACTTCACCACATGTGCCCTATGCCGACGAGAGCAGAT
ACTGCACCCAGACGAGCTGCGGCAGCAGTTTGACCAGCGCCGCATGGCCA
ACCTGGCGCGCCGCCTCCAGAGCCTCCCCCTCTCCCAGACGCTGTCGCTG
TCGCCGCTGCCGCCGCCGCCGCCGCTGCCGCGGCAGCAGAACCGCGCGCG
CGCAGAGTCGTGCGGCGGCGGCGTCGTCCTGCGGCGGCACGGCAGCGGCA
GCAGTCGCGGAGCGCTGTGGCACGGCGGGCGCGCAGCGGCGGCGGGCGCG
GCGGCGGCGCTGCTGAGCGCTGACGAGGAGAAGGACAGCTGCTGCTCGCG
CAAGAGCCGCAGCAGCAGCGGCGTCTGCAGCCGCCGCGGCTCGTTCGACG
CGGAGGAGGTGCTGCTGGCGGCGGCGGAGGGCGAGGCCGCCGCCGCCGCT
GCCGCCGCCTCTCTCGACGGCGGCGGCAGCGACGTGGGCGCCGCCTCCGC
AGCAGAGCTCAGCGCCAGGTACGTAGCGGCGGCGCAGCTGGCAGCGCTCA
GCGCAGACGTTGGCGCGCTGTCCGCGGCAGACCTGGCTACGCGCTGGCAG
CAGCAGCAGCAACAGCAGCAGCGCGGCGCCTTCTCCCGCGGCATCGCCGA
AGATGCCGGCGCAGCGCCAGCGCCTGTTGTCAAGACGCGATACCAGGCGA
TGCAGCGACTGGCGGCGCCGAGCGTGGACACGGGCGCCCTGCCCTCCGCC
GCGCTGCGCGCACGCTGGCCGCAGCAGCAGCAGCGCTCAACCACGATCGC
CGCCGCCTCCAACGACGTGGGCGCATGCTCCAGCGCAAGCCTGGCGGCGC
GCTACGCGGCGCTCATGGCGCTGGCGGCGCCGGCCGCTGATTTGGGCGGC
CTCGCGAGCGCCGCGCTGCGTGCGCGCTGGTGGCAGCAGCGCGCCGCCGC
CGCCGCCGATACGAGCGTCGGCGCATCCAGCCGTGCCGACCTGGCGAGCC
GGTGGCGCCGTGGCTCCGCTGCCGCTGCTGCCGCCGCTGCTGCTGCCGTC
AGTGCGGACGCCGGTGCAGAGGGCACTAGCAGCCTGCGGCAGCGGTGGCA
GAGCATCACGGGCGACAGCAGCATCAGCGGCAGCGACAGCGCCACGCTCA
AGCGCCGCTGGCAAACCGTCAGCTGCGCAGCCACGGCCGGCGGTGCTGCT
GAAGCGGAGGAACAGGATGCGGAATGGCTGCGGCAGTGCTGTCAGAGCAG
CGTTGGCGCTGCCACCGGGTCGGAGCTGTGCCGCCGCTGGAACGCCGCCG
CTGCTGCTGAAAGCGCAACCGCCGCCAGCGACAACGTAGCAGCGGAAGGT
ATGGGTGCGCTGCAGCGGCGCTGGCTGAGCAATGGCGCAGCAGCGGCGCG
CGCAGTAGACGTCGGCAGCGCCCGTGTCGCGGATCTGCAGCAGCGGTGGC
GCGAGGCGACGGCGGATGACACCGTTGGCGCTTGCAGCGCAGCAGCGCTC
AGGCGCCGCTGGCAGGCCGCAGCTGCCGCTGCTAGCGCAGATGTGGGGGC
CACAGATGGCGCCGGCCTGCAGCAGCGGTGGCGTGCAGCTGCGGCGGCGG
AGGAGTGCGTGGGCGGTGCCCGCAGCGGCGCGCTGCAGCGGCGCTGGCGC
GAGGCGCTGCGCAAGCCGGGCGTCGCTGATGTCGGCGCTCAGCGCACAGT
CGACCTTAAGCGGCGGTGGCATGAGGCAGCAGCGTGTGACAGCAGCAGCG
TAGGCGCTGCCGGCAGCGGCGAACTGCAGCAGCGCTGGACGGCCCTGGCC
ACGGCCAGCCGTGACGATATTGGAGACTCGGATGCGGCGGAGCTGGCGCA
GCAGTGGCAGCGCTCAACGGGGGACGATGACAGCGTCGGCGTTGCCAACT
GCGCGCAGCTTGAGGCGCGCTGGCACGCGTACGCCGCTGAGTGCGGAGCG
GATGTGGGAGGGGTGAGCAAGGCGGAGCTGCAGCAGCGGTGGGCGGAGGC
GGCAGGGGGAGCGCTGCTGCTCGATTGCGGTGCAGCCAGTCAGCAGCACC
TGCAGCAGCGGTGGCAGGCAGCCAGCGCACTCTCGCAGTGAATGTTTCTT
GGCGGAATGTCAGTCGCCGTGGTGGCTCCCTGCTGCTGATTGCGCTTTCA
AAGTTGAGGCAGCGTGTGGCAGAGCCATAGTGCACGCCAGCGCAGACCGA
TTTCATTGAGTATGGGGTGAAGACAGAAGAGACAGAGCAGACCAGCATCC
CTGGTCACAGTCTTGC

protein sequence of jgi.p|Trimin1|351942

>Trimin1|351942|estExt_Genemark1.C_Ctg_1040019 ID=Trimin1|351942|estExt_Genemark1.C_Ctg_1040019|Name=jgi.p|Trimin1|351942|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=968bp
MPTSEEVKELLTRAAAAQEKSKEIFSSWCWCMQRMSLGIALACAYRAYMC
HTDSTLAAPALQGGPAAHQFALKSNLAGIAASIAAAYWAYSPWPGLDRRL
ALVLLLGAYEILLYVRLVAAASLTKGSVVRLHAFPLPVVFVGLCCIGTVF
MSKMRREADGVLAREAAMASEVIFMDDTRAVTGTSRLAMDPATLYARHGA
GADMPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLD
TVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQ
RRMANLARRLQSLPLSQTLSLSPLPPPPPLPRQQNRARAESCGGGVVLRR
HGSGSSRGALWHGGRAAAAGAAAALLSADEEKDSCCSRKSRSSSGVCSRR
GSFDAEEVLLAAAEGEAAAAAAAASLDGGGSDVGAASAAELSARYVAAAQ
LAALSADVGALSAADLATRWQQQQQQQQRGAFSRGIAEDAGAAPAPVVKT
RYQAMQRLAAPSVDTGALPSAALRARWPQQQQRSTTIAAASNDVGACSSA
SLAARYAALMALAAPAADLGGLASAALRARWWQQRAAAAADTSVGASSRA
DLASRWRRGSAAAAAAAAAAVSADAGAEGTSSLRQRWQSITGDSSISGSD
SATLKRRWQTVSCAATAGGAAEAEEQDAEWLRQCCQSSVGAATGSELCRR
WNAAAAAESATAASDNVAAEGMGALQRRWLSNGAAAARAVDVGSARVADL
QQRWREATADDTVGACSAAALRRRWQAAAAAASADVGATDGAGLQQRWRA
AAAAEECVGGARSGALQRRWREALRKPGVADVGAQRTVDLKRRWHEAAAC
DSSSVGAAGSGELQQRWTALATASRDDIGDSDAAELAQQWQRSTGDDDSV
GVANCAQLEARWHAYAAECGADVGGVSKAELQQRWAEAAGGALLLDCGAA
SQQHLQQRWQAASALSQ*

mRNA from alignment at Contig_104:105121..111261-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10181 ID=mRNA_10181|Name=jgi.p|Trimin1|351942|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6141bp|location=Sequence derived from alignment at Contig_104:105121..111261- (Tribonema minus UTEX_B_3156 )
GCGACTGAGCGGCGGGTGCACCTGTAGGGGCGCGAAAATGCCTACTAGCG
AGGAGGTGAAGGAGCTGTTGACAAGAGCTGCAGCAGCTCAGGAGAAAAGC
AAGGTACCTACATAAACCAACTATCATGTTGTCGTTCTGGCTTGTGCCAA
TAGCATGCATGTTTTGCGTTCGCAGCGATTTCTCAGCGCAGAATCCAATC
AACACCGCATTTCTCAATCACCCGTTGGTGCAGGTCGTTGTGTTTGTGCT
TGTGATTTCTCTAGATTTGACTGTGACATCCTCATTCCCGATCGTGCCAT
ACACCTCGGCGGTGGCTGCTTGACATTACCGTGGCGCTATCACGAAAACA
GCGCCTTGACACACTACTCGATACGAATTGAGACTCATCTTACATGGGTC
TCAGTATAGTTGGGGCTAATTCCAAGTCATCACATGGCAAGTGTGCTTGC
CGTGCCGCGGCTTCGGCTGCGTCGGCCGGGCAGCCATAAGCTGACCAGTT
GCTTCACAACTGAGCCGGCTTCACAACTGCGCACAGTCTGATGTGGGCTC
TGCATTTTCAGCAGATTTGAGTTGAGCTTACACACAACTCAGCATGCCTG
ACATGGTATACAGTGCTTGATGCGAAGCCATCAAGCACTGTATACCATGT
CAGGCATGAACCGTAAGGATGCCTGCAATCAACATTGAGGCGATTTCGCA
CTCTTGTAGCATGCAGACTGCCTGTCCACCGCCATTCCATGCCCTAGCTC
ATTGGATGCGGTGCAGCGTAGGGCCTCAGCATGAGTGTCACATGTGAGCT
CACTGCGCCGCCTAAGCTACTGGAGGCCTTGTCGCAAGAGCCACATCTGC
GTTGGCACACATGGACACTCAATGCCCTCGCTCGCACCCATTGCCCCCCT
GCAGGAGATCTTCAGCAGCTGGTGCTGGTGCATGCAGCGCATGTCCCTGG
GCATAGCGCTCGCGTGCGCGTACAGAGCGTACATGTGCCACACGGACTCC
ACCCTCGCAGCGCCGGCACTACAGGGCGGTCCCGCAGCACACCAATTTGC
GCTTAAATCCAATCTGGCAGGCATAGCCGCCTCCATCGCTGCTGCTTACT
GGGCGTATTCGCCGTGGCCTGGCCTGGATCGGCGGCTAGCGCTGGTTCTG
CTACTGGGGGCGTATGAGATACTGCTGTATGTCAGGCTGGTGGCAGCAGC
GTCGCTGACAAAAGGCAGCGTGGTGCGGCTGCACGCGTTTCCGCTGCCTG
TCGTCTTTGTGGGGCTCTGCTGCATCGGCACGGTGTTCATGAGCAAGATG
AGGAGAGAGGCCGATGGTGTGCTGGCGCGCGTCGAACAAGCCGCGAAAAT
GCTGCGCAGCACTCAGCAAAGCAGCGGCGCGCCAGCAAAACGATGACAGT
GTACACCCTCACGGATTACGTCTTGATGCATCTACATCTTGCGCTGTGAA
TGGTACACACATTAGGCTTTGCATTCATGTTGTGACATGGCATGTGCCAT
TTTGTGTATATCTGCCGTCAGCTACCTGCCTGCCCTGGCAGACCTGTTTG
ACTCAGACTCGGAGGCTTTGACAACATGACAGCGCAGTTCGCAGCCCATC
TACACCTCTGCTCTGCACATGTGCACCAACTACAACTGTTGGCTGTGCAG
GCAGATCATGCATTGTACTTGTCATTGTTTCTCGCTCAAAGCGCAAAAAG
TCCCAGATGGTTGATGTCCAGCTTGCAGCCAGAATCTGCACTTGTCTTTG
TGAACACCTTGACAGTGTCTCAGCGCTTTGCCAATCATATGTGTTGTACA
TACAGTGGTCATTGCAGTATTTGCGTGGCGAATCATGCGCGGCCTTGCAG
TGGATGAATCTTTGATCACTGCACTCTCTATCTTAACCAGTTTTTAGATC
ATCATGTGGTAAGTAGGTTGGGTTTGCGCACTGCCGTGATTTGACATTTG
GTTGGAAAATCCCAGAGAGTTTATGTCCAATTTGCAACCAGAATCTACAT
GGGTCTTTGTGAACACCTTGAAAGTGTCTCAATGCGCATCGCCACACACA
TGCGTTGTACGTATGACGGTCACTGTAGTATTGCTGTGGCAAAACTGCAA
GCTGCGGGTCTTGCGGTAAATGTATTCACTGCGCTTTCCAACTCACCTCG
TATGTAAAGAGGGTTAGGGCTTGCGCACTGCCGTTGACTTTGGTTGGAAG
GAAGCAGGCTCACACGACCGCAGTGAGGAAGCTGCCATGGCGAGCGAGGT
GATTTTCATGGATGATACCCGGGCGGTGACAGGGACATCGCGGCTGGCGA
TGGACCCTGCCACCCTGTATGCCAGGCATGGAGCAGGAGCTGACATGCCG
AAGGGGGAGGGGGCGCTGGACAATTTCATCGTGGCCAGGCTCAACGATGA
GACCTCGTGAGTAGCCGCCGTCACTGGTGTTTAGCCCTGTGCTGATCGCT
CTGCCGCAGGCCATCTTGTAAGCCCGGTTGCTGGTGATTAGCTGGTGGCC
CCAGTCGAGTCCAAAGTTCAAGGAGTTTCTGACTGCAACTTACGCACACG
CTGGAGAGGATGTAAGCGGTAGCCTCCGTGTTGGTTTATGTGTCACGTCG
TCAGACGCAGCGTGACTGTGCTGTCCCGTTGTCCACATCGCGTCAAACGG
AACCCGGCTCGCTCATTCAAAAGTCGCCGTTCAGTCAACAAGGCCTTGAA
TGTTGCCGCACACAGCTCTCGCGCAGCTGGTTTAGCGATGGTCTTTGTGA
TACTCACATAAGACTTGAATCTTTGTGGTAGATGAGCTTTTTCAGTAATG
CCAGGTGCTGCACTATACACTCAGAGGAAGGTTTTTCCCTCGGGGATTCA
ATTTATGCTGGTTCGAGTGAATCGCCTACATATAACGAGCGGAGTTGCAA
TTGCTGGGACAAGGCCCTCAGCCTGGCAGCCTTTCGAATGCATCGCTGCG
TGCCGTATGCTGCGTTTGACGTGATGTAGCATGCCCGATGAAAGCACCTG
CGTGCATCATGCAAGGGACCTAAGCCGTCGACAGGGGCACATAAAATAAG
TGGCCCGCCGATGCAGGTTATCCGTTGCACCCACACACGTTAAACTGTGA
CCTTCTGATTGACCGCCGTCATTGCAGCTCAGTCGCACTCATATACATGT
AGCAGCACTTGGTCATGTCCCTACTGCCTGCGTGCAAGGATTCGCATCTT
CGGCATCTTTCATCTTCACAAACACCGCTAGCCTGTGTCTGTGCTTTGAC
TCGAGTACAATCAAGAGCAGCGCGCATCACACCAATATGATTGCAGCATG
ACGTTTGCATCATCATTGTTGCTCATGTCTCGTGGTGAGCGTACCTGATC
TGCTAGCAGAGGTTGCACGTGCCCTTCTCAGCTCAAGAGTGTTCAATTAA
GCTCATGACCACCACCACCACCGCTCCTTGCCACTCGCCCCTGCCCCTCT
TCGCAGCTACTTCATGACGTGGTTCTGCAAGCACTTCCGCCTGCGCCTCA
ACACTGCCCCCAGCTCCTGCCCCATCTGCCTGGACACTGTCACCAACAGC
ATTCAGCTGCAGTGCGGCCACGCATTCTGCAGGAGCTGCCTCGCGGCCAG
CGCGGCATGCAACTTCACCACATGTGCCCTATGCCGACGAGAGCAGGTGA
TGGTCGTGGCCCCGCTTGATGCATGTTTTTAGCTGCTGGCCCATCTGAGA
GGCAGTACTGCATAACCATGTTGTGAGTGTGCCGTGCGTGCTGCATCTGC
ACCCAAAGAAACGCGTTGGATTGACCGCATTCGCTGCAGTCCATATTGCG
GACACCATCAGCTACCACAGCCTTGACTGCTGATTCTAGCTGTGATGATC
GACTTGTGCTGCACCGTGTAGCGCTGACCCCCCCCCCCCCCCCCCCCCTT
CCCCTGCTCCCCCTTCCCATCAGATACTGCACCCAGACGAGCTGCGGCAG
CAGTTTGACCAGCGCCGCATGGCCAACCTGGCGCGCCGCCTCCAGAGCCT
CCCCCTCTCCCAGACGCTGTCGCTGTCGCCGCTGCCGCCGCCGCCGCCGC
TGCCGCGGCAGCAGAACCGCGCGCGCGCAGAGTCGTGCGGCGGCGGCGTC
GTCCTGCGGCGGCACGGCAGCGGCAGCAGTCGCGGAGCGCTGTGGCACGG
CGGGCGCGCAGCGGCGGCGGGCGCGGCGGCGGCGCTGCTGAGCGCTGACG
AGGAGAAGGACAGCTGCTGCTCGCGCAAGAGCCGCAGCAGCAGCGGCGTC
TGCAGCCGCCGCGGCTCGTTCGACGCGGAGGAGGTGCTGCTGGCGGCGGC
GGAGGGCGAGGCCGCCGCCGCCGCTGCCGCCGCCTCTCTCGACGGCGGCG
GCAGCGACGTGGGCGCCGCCTCCGCAGCAGAGCTCAGCGCCAGGTACGTA
GCGGCGGCGCAGCTGGCAGCGCTCAGCGCAGACGTTGGCGCGCTGTCCGC
GGCAGACCTGGCTACGCGCTGGCAGCAGCAGCAGCAACAGCAGCAGCGCG
GCGCCTTCTCCCGCGGCATCGCCGAAGATGCCGGCGCAGCGCCAGCGCCT
GTTGTCAAGACGCGATACCAGGCGATGCAGCGACTGGCGGCGCCGAGCGT
GGACACGGGCGCCCTGCCCTCCGCCGCGCTGCGCGCACGCTGGCCGCAGC
AGCAGCAGCGCTCAACCACGATCGCCGCCGCCTCCAACGACGTGGGCGCA
TGCTCCAGCGCAAGCCTGGCGGCGCGCTACGCGGCGCTCATGGCGCTGGC
GGCGCCGGCCGCTGATTTGGGCGGCCTCGCGAGCGCCGCGCTGCGTGCGC
GCTGGTGGCAGCAGCGCGCCGCCGCCGCCGCCGATACGAGCGTCGGCGCA
TCCAGCCGTGCCGACCTGGCGAGCCGGTGGCGCCGTGGCTCCGCTGCCGC
TGCTGCCGCCGCTGCTGCTGCCGTCAGTGCGGACGCCGGTGCAGAGGGCA
CTAGCAGCCTGCGGCAGCGGTGGCAGAGCATCACGGGCGACAGCAGCATC
AGCGGCAGCGACAGCGCCACGCTCAAGCGCCGCTGGCAAACCGTCAGCTG
CGCAGCCACGGCCGGCGGTGCTGCTGAAGCGGAGGAACAGGATGCGGAAT
GGCTGCGGCAGTGCTGTCAGAGCAGCGTTGGCGCTGCCACCGGGTCGGAG
CTGTGCCGCCGCTGGAACGCCGCCGCTGCTGCTGAAAGCGCAACCGCCGC
CAGCGACAACGTAGCAGCGGAAGGTATGGGTGCGCTGCAGCGGCGCTGGC
TGAGCAATGGCGCAGCAGCGGCGCGCGCAGTAGACGTCGGCAGCGCCCGT
GTCGCGGATCTGCAGCAGCGGTGGCGCGAGGCGACGGCGGATGACACCGT
TGGCGCTTGCAGCGCAGCAGCGCTCAGGCGCCGCTGGCAGGCCGCAGCTG
CCGCTGCTAGCGCAGATGTGGGGGCCACAGATGGCGCCGGCCTGCAGCAG
CGGTGGCGTGCAGCTGCGGCGGCGGAGGAGTGCGTGGGCGGTGCCCGCAG
CGGCGCGCTGCAGCGGCGCTGGCGCGAGGCGCTGCGCAAGCCGGGCGTCG
CTGATGTCGGCGCTCAGCGCACAGTCGACCTTAAGCGGCGGTGGCATGAG
GCAGCAGCGTGTGACAGCAGCAGCGTAGGCGCTGCCGGCAGCGGCGAACT
GCAGCAGCGCTGGACGGCCCTGGCCACGGCCAGCCGTGACGATATTGGAG
ACTCGGATGCGGCGGAGCTGGCGCAGCAGTGGCAGCGCTCAACGGGGGAC
GATGACAGCGTCGGCGTTGCCAACTGCGCGCAGCTTGAGGCGCGCTGGCA
CGCGTACGCCGCTGAGTGCGGAGCGGATGTGGGAGGGGTGAGCAAGGCGG
AGCTGCAGCAGCGGTGGGCGGAGGCGGCAGGGGGAGCGCTGCTGCTCGAT
TGCGGTGCAGCCAGTCAGCAGCACCTGCAGCAGCGGTGGCAGGCAGCCAG
CGCACTCTCGCAGTGAATGTTTCTTGGCGGAATGTCAGTCGCCGTGGTGG
CTCCCTGCTGCTGATTGCGCTTTCAAAGTTGAGGCAGCGTGTGGCAGAGC
CATAGTGCACGCCAGCGCAGACCGATTTCATTGAGTATGGGGTGAAGACA
GAAGAGACAGAGCAGACCAGCATCCCTGGTCACAGTCTTGC

Coding sequence (CDS) from alignment at Contig_104:105121..111261-

>mRNA_10181 ID=mRNA_10181|Name=jgi.p|Trimin1|351942|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2904bp|location=Sequence derived from alignment at Contig_104:105121..111261- (Tribonema minus UTEX_B_3156 )
ATGCCTACTAGCGAGGAGGTGAAGGAGCTGTTGACAAGAGCTGCAGCAGC
TCAGGAGAAAAGCAAGGAGATCTTCAGCAGCTGGTGCTGGTGCATGCAGC
GCATGTCCCTGGGCATAGCGCTCGCGTGCGCGTACAGAGCGTACATGTGC
CACACGGACTCCACCCTCGCAGCGCCGGCACTACAGGGCGGTCCCGCAGC
ACACCAATTTGCGCTTAAATCCAATCTGGCAGGCATAGCCGCCTCCATCG
CTGCTGCTTACTGGGCGTATTCGCCGTGGCCTGGCCTGGATCGGCGGCTA
GCGCTGGTTCTGCTACTGGGGGCGTATGAGATACTGCTGTATGTCAGGCT
GGTGGCAGCAGCGTCGCTGACAAAAGGCAGCGTGGTGCGGCTGCACGCGT
TTCCGCTGCCTGTCGTCTTTGTGGGGCTCTGCTGCATCGGCACGGTGTTC
ATGAGCAAGATGAGGAGAGAGGCCGATGGTGTGCTGGCGCGCGAAGCTGC
CATGGCGAGCGAGGTGATTTTCATGGATGATACCCGGGCGGTGACAGGGA
CATCGCGGCTGGCGATGGACCCTGCCACCCTGTATGCCAGGCATGGAGCA
GGAGCTGACATGCCGAAGGGGGAGGGGGCGCTGGACAATTTCATCGTGGC
CAGGCTCAACGATGAGACCTCCTACTTCATGACGTGGTTCTGCAAGCACT
TCCGCCTGCGCCTCAACACTGCCCCCAGCTCCTGCCCCATCTGCCTGGAC
ACTGTCACCAACAGCATTCAGCTGCAGTGCGGCCACGCATTCTGCAGGAG
CTGCCTCGCGGCCAGCGCGGCATGCAACTTCACCACATGTGCCCTATGCC
GACGAGAGCAGATACTGCACCCAGACGAGCTGCGGCAGCAGTTTGACCAG
CGCCGCATGGCCAACCTGGCGCGCCGCCTCCAGAGCCTCCCCCTCTCCCA
GACGCTGTCGCTGTCGCCGCTGCCGCCGCCGCCGCCGCTGCCGCGGCAGC
AGAACCGCGCGCGCGCAGAGTCGTGCGGCGGCGGCGTCGTCCTGCGGCGG
CACGGCAGCGGCAGCAGTCGCGGAGCGCTGTGGCACGGCGGGCGCGCAGC
GGCGGCGGGCGCGGCGGCGGCGCTGCTGAGCGCTGACGAGGAGAAGGACA
GCTGCTGCTCGCGCAAGAGCCGCAGCAGCAGCGGCGTCTGCAGCCGCCGC
GGCTCGTTCGACGCGGAGGAGGTGCTGCTGGCGGCGGCGGAGGGCGAGGC
CGCCGCCGCCGCTGCCGCCGCCTCTCTCGACGGCGGCGGCAGCGACGTGG
GCGCCGCCTCCGCAGCAGAGCTCAGCGCCAGGTACGTAGCGGCGGCGCAG
CTGGCAGCGCTCAGCGCAGACGTTGGCGCGCTGTCCGCGGCAGACCTGGC
TACGCGCTGGCAGCAGCAGCAGCAACAGCAGCAGCGCGGCGCCTTCTCCC
GCGGCATCGCCGAAGATGCCGGCGCAGCGCCAGCGCCTGTTGTCAAGACG
CGATACCAGGCGATGCAGCGACTGGCGGCGCCGAGCGTGGACACGGGCGC
CCTGCCCTCCGCCGCGCTGCGCGCACGCTGGCCGCAGCAGCAGCAGCGCT
CAACCACGATCGCCGCCGCCTCCAACGACGTGGGCGCATGCTCCAGCGCA
AGCCTGGCGGCGCGCTACGCGGCGCTCATGGCGCTGGCGGCGCCGGCCGC
TGATTTGGGCGGCCTCGCGAGCGCCGCGCTGCGTGCGCGCTGGTGGCAGC
AGCGCGCCGCCGCCGCCGCCGATACGAGCGTCGGCGCATCCAGCCGTGCC
GACCTGGCGAGCCGGTGGCGCCGTGGCTCCGCTGCCGCTGCTGCCGCCGC
TGCTGCTGCCGTCAGTGCGGACGCCGGTGCAGAGGGCACTAGCAGCCTGC
GGCAGCGGTGGCAGAGCATCACGGGCGACAGCAGCATCAGCGGCAGCGAC
AGCGCCACGCTCAAGCGCCGCTGGCAAACCGTCAGCTGCGCAGCCACGGC
CGGCGGTGCTGCTGAAGCGGAGGAACAGGATGCGGAATGGCTGCGGCAGT
GCTGTCAGAGCAGCGTTGGCGCTGCCACCGGGTCGGAGCTGTGCCGCCGC
TGGAACGCCGCCGCTGCTGCTGAAAGCGCAACCGCCGCCAGCGACAACGT
AGCAGCGGAAGGTATGGGTGCGCTGCAGCGGCGCTGGCTGAGCAATGGCG
CAGCAGCGGCGCGCGCAGTAGACGTCGGCAGCGCCCGTGTCGCGGATCTG
CAGCAGCGGTGGCGCGAGGCGACGGCGGATGACACCGTTGGCGCTTGCAG
CGCAGCAGCGCTCAGGCGCCGCTGGCAGGCCGCAGCTGCCGCTGCTAGCG
CAGATGTGGGGGCCACAGATGGCGCCGGCCTGCAGCAGCGGTGGCGTGCA
GCTGCGGCGGCGGAGGAGTGCGTGGGCGGTGCCCGCAGCGGCGCGCTGCA
GCGGCGCTGGCGCGAGGCGCTGCGCAAGCCGGGCGTCGCTGATGTCGGCG
CTCAGCGCACAGTCGACCTTAAGCGGCGGTGGCATGAGGCAGCAGCGTGT
GACAGCAGCAGCGTAGGCGCTGCCGGCAGCGGCGAACTGCAGCAGCGCTG
GACGGCCCTGGCCACGGCCAGCCGTGACGATATTGGAGACTCGGATGCGG
CGGAGCTGGCGCAGCAGTGGCAGCGCTCAACGGGGGACGATGACAGCGTC
GGCGTTGCCAACTGCGCGCAGCTTGAGGCGCGCTGGCACGCGTACGCCGC
TGAGTGCGGAGCGGATGTGGGAGGGGTGAGCAAGGCGGAGCTGCAGCAGC
GGTGGGCGGAGGCGGCAGGGGGAGCGCTGCTGCTCGATTGCGGTGCAGCC
AGTCAGCAGCACCTGCAGCAGCGGTGGCAGGCAGCCAGCGCACTCTCGCA
GTGA