Trimin1|351914|estExt_Genemark1.C_Ctg_1020070 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351914
Unique NameTrimin1|351914|estExt_Genemark1.C_Ctg_1020070
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length985
Homology
BLAST of jgi.p|Trimin1|351914 vs. uniprot
Match: A0A835ZKE6_9STRA (NopRA1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKE6_9STRA)

HSP 1 Score: 1439 bits (3726), Expect = 0.000e+0
Identity = 984/984 (100.00%), Postives = 984/984 (100.00%), Query Frame = 0
Query:    1 MRRGAAAGMRHGAATGVLHRLLSRATRVCMTHSLAVSNIAAGVMAPLLAHYTGSLSSRDVLTARLLRLYQDAGALPPRAAALRWACAEDEDAVDDAQPPQQQPKXXXXXXXXXXXLQPKVPWHHGRRHGSAYARGPPPPPWLSEPSIARRFRASIGAFPLRRPLEPPPLPFEPAFEQMGGEGGREGAPGSGNGDVQLEDDGDAMSVDGDDAADAASDGTDAEGGQSEXXXXXXXXXXXXXQCSAAADAAAAHEVLDPAFVLPLLDDALSTAGCAVARQVCESGALAYCLAATASLRACTRAAALACLQRLLSVVEGDACAADTAFKQRPQATPPAPCRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLTATVCPRRVPCAQLLLLLRSLRDGVTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACNWALRLLRDGVRTGQDLGTAARAHAAPLLLLLLDAADGAATRGAALEALAAVARLRRGGARYLLRRAGVVAWARLALSRAAAPAADARPHMYRRQAGVAATAASLAALLRLLRDLLSAGLQLRVPLLPEEYALLAPEVAAXXXXXXXXWLPQLSASPSGEHDDDAEAPASTAVADVTAEVQQEPQAVVAALELLADTAAAAAAEGRPGLLLPVSTAQQLLLAAQRVAPAXXXXXXXXXXXXXXXVLRLAAAVSADDEVTHALAADRRLLCALLALPSAVTSHARNCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEANSVRVQVAHALLQALPPXXXXXXXXXXDAVRDGDGDNGDGSARWAARMACTALQRLLLSPSADCSDVARAVPPGLCDDATVQRIVAALRPVCGSGFGDRSSAGGDGVKRKKRHGDGGGDGSHQVGIKRKSGSKSVAAVPATAVKAAVPSKRKRRKSS 984
            MRRGAAAGMRHGAATGVLHRLLSRATRVCMTHSLAVSNIAAGVMAPLLAHYTGSLSSRDVLTARLLRLYQDAGALPPRAAALRWACAEDEDAVDDAQPPQQQPKXXXXXXXXXXXLQPKVPWHHGRRHGSAYARGPPPPPWLSEPSIARRFRASIGAFPLRRPLEPPPLPFEPAFEQMGGEGGREGAPGSGNGDVQLEDDGDAMSVDGDDAADAASDGTDAEGGQSEXXXXXXXXXXXXXQCSAAADAAAAHEVLDPAFVLPLLDDALSTAGCAVARQVCESGALAYCLAATASLRACTRAAALACLQRLLSVVEGDACAADTAFKQRPQATPPAPCRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLTATVCPRRVPCAQLLLLLRSLRDGVTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACNWALRLLRDGVRTGQDLGTAARAHAAPLLLLLLDAADGAATRGAALEALAAVARLRRGGARYLLRRAGVVAWARLALSRAAAPAADARPHMYRRQAGVAATAASLAALLRLLRDLLSAGLQLRVPLLPEEYALLAPEVAAXXXXXXXXWLPQLSASPSGEHDDDAEAPASTAVADVTAEVQQEPQAVVAALELLADTAAAAAAEGRPGLLLPVSTAQQLLLAAQRVAPAXXXXXXXXXXXXXXXVLRLAAAVSADDEVTHALAADRRLLCALLALPSAVTSHARNCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEANSVRVQVAHALLQALPPXXXXXXXXXXDAVRDGDGDNGDGSARWAARMACTALQRLLLSPSADCSDVARAVPPGLCDDATVQRIVAALRPVCGSGFGDRSSAGGDGVKRKKRHGDGGGDGSHQVGIKRKSGSKSVAAVPATAVKAAVPSKRKRRKSS
Sbjct:    1 MRRGAAAGMRHGAATGVLHRLLSRATRVCMTHSLAVSNIAAGVMAPLLAHYTGSLSSRDVLTARLLRLYQDAGALPPRAAALRWACAEDEDAVDDAQPPQQQPKXXXXXXXXXXXLQPKVPWHHGRRHGSAYARGPPPPPWLSEPSIARRFRASIGAFPLRRPLEPPPLPFEPAFEQMGGEGGREGAPGSGNGDVQLEDDGDAMSVDGDDAADAASDGTDAEGGQSEXXXXXXXXXXXXXQCSAAADAAAAHEVLDPAFVLPLLDDALSTAGCAVARQVCESGALAYCLAATASLRACTRAAALACLQRLLSVVEGDACAADTAFKQRPQATPPAPCRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLTATVCPRRVPCAQLLLLLRSLRDGVTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACNWALRLLRDGVRTGQDLGTAARAHAAPLLLLLLDAADGAATRGAALEALAAVARLRRGGARYLLRRAGVVAWARLALSRAAAPAADARPHMYRRQAGVAATAASLAALLRLLRDLLSAGLQLRVPLLPEEYALLAPEVAAXXXXXXXXWLPQLSASPSGEHDDDAEAPASTAVADVTAEVQQEPQAVVAALELLADTAAAAAAEGRPGLLLPVSTAQQLLLAAQRVAPAXXXXXXXXXXXXXXXVLRLAAAVSADDEVTHALAADRRLLCALLALPSAVTSHARNCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEANSVRVQVAHALLQALPPXXXXXXXXXXDAVRDGDGDNGDGSARWAARMACTALQRLLLSPSADCSDVARAVPPGLCDDATVQRIVAALRPVCGSGFGDRSSAGGDGVKRKKRHGDGGGDGSHQVGIKRKSGSKSVAAVPATAVKAAVPSKRKRRKSS 984          
BLAST of jgi.p|Trimin1|351914 vs. uniprot
Match: I0YZ35_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZ35_COCSC)

HSP 1 Score: 63.2 bits (152), Expect = 3.250e-6
Identity = 62/183 (33.88%), Postives = 80/183 (43.72%), Query Frame = 0
Query:  388 AQLLLLLRSLRDGVTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACNWALRLLRDGVRTGQDLGTAARAHAAPLLLLLLDAADG-AATRGAALEALAAVARLRRGGARYLLRRAGVVAW 569
            AQL+LLLR+LR  V  P  R+PTL A+ L+ AA  LA  PA D Y A+NR LLRR  + + + P    L+S                                        W LRLL  G R+  D     R   A LL+ L D+  G AA +  AL  L +  +     A  L++ AGVV W
Sbjct: 1537 AQLVLLLRALRLSVERPFQRLPTLTALFLSEAACALAH-PAADMYPALNRHLLRRATLDIQDAPLLKQLLSSGGQEQAAERL-----------------------------WLLRLLAAGFRSSADGDIFRRRFVAELLMSLHDSPLGDAALQAVALRTLCSAPQCAPTYAADLVQHAGVVFW 1689          
BLAST of jgi.p|Trimin1|351914 vs. uniprot
Match: A0A7S4KYR4_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KYR4_GUITH)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-5
Identity = 48/185 (25.95%), Postives = 81/185 (43.78%), Query Frame = 0
Query:  392 LLLRSLRDGVTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACNWALRLLRDGVRTGQDLGTAARAHAAPLLLLLLDAAD-GAATRGAALEALAAVARLRRGGARYLLRRAGVVAWARLALS 575
            +LLRSLRD +T P  ++P +V   +A +  ++   PAH  +  +  FLL+RP + +NE+P    +++                                       +W +R+L+   R+  D     + H   LL+   D+   G  T  + L+ L A +    G   YL+ +AGV+AW R +LS
Sbjct:   29 ILLRSLRDAITQPLQKLPVIVTCFVAESIPIVLR-PAHPLFQPVTSFLLQRPFLDLNEIPMLYQMLNSGGASWRTER-----------------------------DWCIRMLKHAPRSEHDRSIFRKRHVLSLLMATHDSFSCGNDTSCSILQVLLAFSHTPSGSV-YLVEQAGVLAWIRSSLS 182          
BLAST of jgi.p|Trimin1|351914 vs. uniprot
Match: A0A427Y4K0_9TREE (Uncharacterized protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427Y4K0_9TREE)

HSP 1 Score: 60.1 bits (144), Expect = 2.710e-5
Identity = 54/169 (31.95%), Postives = 77/169 (45.56%), Query Frame = 0
Query:  401 VTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACNWALRLLRDGVRTGQDLGTAARAHAAPLLLLLLDAADGAATRGAALEALAAVARLRRGGARYLLRRAGVVAW 569
            +T    RVPTL+A+ +AHA   LA  PAH  Y   +RFLL+RP +   +VP    ++  +                                  R   W +RLLRDGV++  D    AR +   LL  L  ++  A  R   L A+ ++AR+  GG R LLR + +VAW
Sbjct: 1581 LTPKQPRVPTLIALFIAHALRALAH-PAHFLYPISSRFLLQRPTLDSGDVPALYGMLYAAGDGSR-----------------------------RERTWMVRLLRDGVKSDADYRILARRNTFALLASLFQSSQDAVFRRNVLGAVTSIARVPAGG-RALLRNS-LVAW 1717          
BLAST of jgi.p|Trimin1|351914 vs. uniprot
Match: A0A433QS70_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QS70_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 8.160e-5
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 0
Query:  389 QLLLLLRSLRDGVTD-------PSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSGSS 461
            Q+LLLL SL++ +TD        + R+PT++ V +AHA  +L   PAH  Y  +NRFLL+RP I + ++P F +L + SS
Sbjct: 1781 QILLLLDSLKNAITDCGDHLDPMTQRIPTIITVFVAHAFAILLQ-PAHFMYPHVNRFLLQRPFIDLEDIPMFYSLFNTSS 1859          
BLAST of jgi.p|Trimin1|351914 vs. uniprot
Match: A0A0D2WMT1_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMT1_CAPO3)

HSP 1 Score: 58.5 bits (140), Expect = 8.430e-5
Identity = 39/143 (27.27%), Postives = 68/143 (47.55%), Query Frame = 0
Query:  389 QLLLLLRSLRDGVTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACNWALRLLRDGVRTGQDLGTAARAHAAPLLLLLLD 531
            QL +LL SLR+ V   + ++P+++   + HAA V+ ++ AH  Y  +N++LL RP ++++++P F  L + S+                                 +  NW LR+L  GVRT  DL    R H   +L+  ++
Sbjct: 2316 QLRVLLMSLRNAVVSRAQQLPSVLMSVVVHAARVVTNS-AHPLYATLNKYLLARPALELDDIPMFYQLFN-SATLDSASLSSAAALQIDSGAKSGSNNAGEQPLHRKERNWLLRVLATGVRTKMDLDVLRRRHVPEMLMAFIN 2456          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351914 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835ZKE6_9STRA0.000e+0100.00NopRA1 domain-containing protein n=1 Tax=Tribonema... [more]
I0YZ35_COCSC3.250e-633.88Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A7S4KYR4_GUITH1.360e-525.95Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A427Y4K0_9TREE2.710e-531.95Uncharacterized protein n=1 Tax=Apiotrichum porosu... [more]
A0A433QS70_9FUNG8.160e-542.50Uncharacterized protein n=2 Tax=Jimgerdemannia fla... [more]
A0A0D2WMT1_CAPO38.430e-527.27Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032436Nucleolar pre-ribosomal-associated protein 1, C-terminal domainPFAMPF16201NopRA1coord: 285..569
e-value: 2.5E-27
score: 95.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 930..945
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 929..984
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 652..671
IPR039844Nucleolar pre-ribosomal-associated protein 1PANTHERPTHR13500NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1coord: 18..595

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:549771..558972 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351914mRNA_11857Tribonema minus UTEX_B_3156 mRNAContig_102 549537..558972 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351914|estExt_Genemark1.C_Ctg_1020070 ID=Trimin1|351914|estExt_Genemark1.C_Ctg_1020070|Name=jgi.p|Trimin1|351914|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=985bp
MRRGAAAGMRHGAATGVLHRLLSRATRVCMTHSLAVSNIAAGVMAPLLAH
YTGSLSSRDVLTARLLRLYQDAGALPPRAAALRWACAEDEDAVDDAQPPQ
QQPKDEDAVADAQAPLQPKVPWHHGRRHGSAYARGPPPPPWLSEPSIARR
FRASIGAFPLRRPLEPPPLPFEPAFEQMGGEGGREGAPGSGNGDVQLEDD
GDAMSVDGDDAADAASDGTDAEGGQSESESESPRSEMEMQQCSAAADAAA
AHEVLDPAFVLPLLDDALSTAGCAVARQVCESGALAYCLAATASLRACTR
AAALACLQRLLSVVEGDACAADTAFKQRPQATPPAPCRPPPTLLLPPPLL
LLPPLLPPLPPLLPLLLPRPPLLLLLTATVCPRRVPCAQLLLLLRSLRDG
VTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEV
PFFTTLVSGSSSSAASAAGAAAAAAAAAAAASSYGAGGAGAAAARACNWA
LRLLRDGVRTGQDLGTAARAHAAPLLLLLLDAADGAATRGAALEALAAVA
RLRRGGARYLLRRAGVVAWARLALSRAAAPAADARPHMYRRQAGVAATAA
SLAALLRLLRDLLSAGLQLRVPLLPEEYALLAPEVAAAAAAAAAAWLPQL
SASPSGEHDDDAEAPASTAVADVTAEVQQEPQAVVAALELLADTAAAAAA
EGRPGLLLPVSTAQQLLLAAQRVAPAAPAAIAALSAAQAAAVLRLAAAVS
ADDEVTHALAADRRLLCALLALPSAVTSHARNCEAAAAAAPAAAAKTAAA
AAVLLPLLAATVVASIVATASPPQQEANSVRVQVAHALLQALPPPPVAAA
AAAADAVRDGDGDNGDGSARWAARMACTALQRLLLSPSADCSDVARAVPP
GLCDDATVQRIVAALRPVCGSGFGDRSSAGGDGVKRKKRHGDGGGDGSHQ
VGIKRKSGSKSVAAVPATAVKAAVPSKRKRRKSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032436NopRA1_C
IPR039844URB1