Trimin1|351849|estExt_Genemark1.C_Ctg_1010018 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351849
Unique NameTrimin1|351849|estExt_Genemark1.C_Ctg_1010018
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length582
Homology
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: A0A835ZI09_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI09_9STRA)

HSP 1 Score: 1086 bits (2808), Expect = 0.000e+0
Identity = 581/581 (100.00%), Postives = 581/581 (100.00%), Query Frame = 0
Query:    1 MDHDQQEPRICEQPHLEAQPTGGTPPAEGNVKPLRISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLHQQEVFDAESRIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRRPGSSXXXXXAQREGGXXDXXXXXXXXXXNEHSASDSGIGCEGGGAVRTDAERREIGRKSKALIDWGRKEYLEGLGMEAELVYFCDRAFSPENCLLLAWLPGGKMRYCL 581
            MDHDQQEPRICEQPHLEAQPTGGTPPAEGNVKPLRISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLHQQEVFDAESRIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRRPGSSXXXXXAQREGGXXDXXXXXXXXXXNEHSASDSGIGCEGGGAVRTDAERREIGRKSKALIDWGRKEYLEGLGMEAELVYFCDRAFSPENCLLLAWLPGGKMRYCL
Sbjct:    1 MDHDQQEPRICEQPHLEAQPTGGTPPAEGNVKPLRISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLHQQEVFDAESRIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRRPGSSXXXXXAQREGGXXDXXXXXXXXXXNEHSASDSGIGCEGGGAVRTDAERREIGRKSKALIDWGRKEYLEGLGMEAELVYFCDRAFSPENCLLLAWLPGGKMRYCL 581          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: A0A024UQA3_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQA3_9STRA)

HSP 1 Score: 227 bits (578), Expect = 4.740e-64
Identity = 183/568 (32.22%), Postives = 255/568 (44.89%), Query Frame = 0
Query:   21 TGGTPPAEGNVKPLRISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLHQQEVFDAES---------------RIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSP-IAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRA-ALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRRPGSSXXXXXAQREGGXXDXXXXXXXXXXNEHSASDSGIGCEGGGAVRTDAERREIGRKSKALIDWGRKEYLEGLGMEAELVYFCDRAFSPENCLLLAW 571
            T  T  +  + KPL +S + +RK  K  A +D    G+W  C   + RKNR C+  R   + YCG H   + D E                R+PC +D +H++   +L+ HL IC   K A  + S  FYS+ INSG   AGS  +A   D A     A VD  S P++A +A +    A                 + L A+I+ AY+ +V SI   +L    C  L +   A   +   +RHI QQ+SI+GHM+ + +++P H Y E+GAGR +L LAL   YP S  +L+D A  R   D+ + A  N   RAK+DIR L+  K+     + +V ++KHLCGV TDL+LRA A TL P                                S   A        S F       G+AIA CCHH     DYV   +    GF   +F  +  L GWAT                      +GG                 A +S +G          A+R ++GR+ K L+D GR  YL   G+ AELV++C++  S ENCLLLAW
Sbjct:    3 TETTTTSAASTKPLHVSDRLKRKREKSKAMKD----GEWTQCMFKLKRKNRLCNVARVEGSLYCGNH---IVDEEGVTSQKTKKHKQELCKRVPCTLDPSHTVYLFDLKKHLVICNKLKEAEAMRSLPFYSENINSGTHAAGSDHVAPPVDEALHVDDANVDEHSCPSSAKQASLFQTLAAMD-------------FNSLAAKIKSAYDANVPSIPTQKLDHAACTALLKEKQAAGANHSVLRHIQQQASILGHMEAKHLLRPSHVYCELGAGRAMLSLALTQIYPSSPFVLIDRAGSRGKADQHI-ATENKCTRAKIDIRHLNLAKMEQVANQPLVCLSKHLCGVATDLSLRALANTLPP--------------------------------SEGSAGSVPPPITSHF------VGLAIALCCHHACRWEDYVHPQYFLDMGFTVAEFKLMVSLSGWATC-----------------GMSTDGG-----------------AVESVLGLNR-------ADRTQLGRQCKRLLDMGRVHYLRERGVRAELVHYCEQDESLENCLLLAW 470          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: A0A8K1FML3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FML3_PYTOL)

HSP 1 Score: 211 bits (537), Expect = 3.360e-58
Identity = 165/552 (29.89%), Postives = 239/552 (43.30%), Query Frame = 0
Query:   38 KKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLH------------QQEVFDAESRIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGP-PLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLR-----AKGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRRPGSSXXXXXAQREGGXXDXXXXXXXXXXNEHSASDSGIGCEGGGAVRTDAERREIGRKSKALIDWGRKEYLEGLGMEAELVYFCDRAFSPENCLLLAW 571
            K+ Q KLA       +  +G+WD C   + RKNR+C+  R   A +CG H            QQ   +  SR+PCP+D +H++ + +L+ HLK+C  T+ A    +  +YS+ INSG   +       AA+V+             PTA  E  +ID  A    A             DL+ R+  AY+  VGSI   +L    C+ L     A       +RHI QQ+SIIGHM+R  ++  +  ++E+GAGRG+L LAL  T+PDS  +L+D A  R   D  +R        +   RAK+DIR L+   +       +V ++KHLCGV TDL+LRA     P          H  G                                    +    G+A+A CCHH     DY    F    GF  ++F  +  +  WAT                    Q  G   +                  GI         T ++R  +GRK K ++D GR +YL+ LG++ +LV++C+   S ENCLLLAW
Sbjct:   19 KRKQEKLA-------AMKSGEWDRCMFRIVRKNRFCNMERINGALFCGNHLPADAQVSSKSSQQFKAELRSRVPCPIDGSHTVYQYDLEKHLKVCNKTRDAEAAKALPYYSENINSGTHAVTTREELKAAEVSIEASDDTEKEHDGPTAQQEQSLIDKLAALDFA-------------DLVKRVNSAYDTCVGSIPTEKLRHSCCDALLTEKTAAGASRAALRHIEQQASIIGHMERAKLLDSKAAFLELGAGRGMLSLALAQTFPDSLYVLIDRAGSRGKADHFIRDNMSDTSAHKVMRAKIDIRHLNLAGMKELVDMPIVGMSKHLCGVATDLSLRAIANTVPVP------ESHPAG----------------------------------VISPAFKGIAVALCCHHACQWEDYSNPEFFLAQGFSAQEFPLLKGMTSWATC-----------------AMQATGDTVEQVL---------------GI---------TKSDRAILGRKIKRILDAGRIDYLKRLGLQTQLVHYCEVDDSVENCLLLAW 469          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: A0A2P4X027_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X027_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.480e-54
Identity = 173/560 (30.89%), Postives = 241/560 (43.04%), Query Frame = 0
Query:   36 ISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLH----------QQEVFDAESR--IPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPA-SDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHC-YIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDK--GLRAKGNPP-------FRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATT-FGPEGGGRRPGSSXXXXXAQREGGXXDXXXXXXXXXXNEHSASDSGIGCEGGGAVRTDAERREIGRKSKALIDWGRKEYLEGLGMEAELVYFCDRAFSPENCLLLAW 571
            +S+ AQRK  +K A  +++  G WD C   V RKNRYC+  R   + +CG H          + + F A +R  +PCPVDA+H++ + +L  H+ +C   K A  +    +YS  INSG   +        D     G A  D   S P+A ++  +ID        K    D       DL  RI+ AY   VG +   +L    C+ L E           +RHI QQ+SIIGHM++  +++  +  ++E+GAGRG+L LAL   YPDS  +L+D A  R   D+  G   KG+          RAK+DIR L+   +     KRVV ++KHLCGV TDL+LRA     P  +                                          +  A +    G+AIA CCHH     DYV  AF    GF   +F  +  +  W T   G EG                     D          ++ +A                     +GRK K +ID GR  YLE L M+  LV++CD   S ENCLLLAW
Sbjct:   10 LSRDAQRKR-RKQAKAEAKDGGQWDRCMFKVVRKNRYCNISRVPGSLFCGNHLPDSDVAVSKKSQKFKAATRRRVPCPVDASHTVYEYDLAKHVLVCNRVKDADTMKKLPYYSHNINSGTHCSDR-----GDNTTSEGIAEKDEKHSTPSAQEQQGIID--------KLQAID-----FKDLRERIDAAYAACVGELKLEKLHHKCCDQLFEEKKKAGASKSVLRHIEQQASIIGHMEKVRLLEDSNAAFVELGAGRGMLSLALAQMYPDSLYVLIDRAHTRGKADRFIGGDGKGDESAKESSMMLRAKIDIRHLNFAGMQEVLNKRVVCMSKHLCGVATDLSLRAIAQTLPELSNT---------------------------------QVVPLEDTPAAVSSSFQGLAIALCCHHVCAWEDYVNPAFFLAHGFKAEEFELLTSMTSWTTCGMGLEG---------------------DAVQHILDISKDDRAA---------------------LGRKCKRIIDAGRAAYLEQLQMKTRLVHYCDTNDSLENCLLLAW 475          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: A0A662WTD2_9STRA (tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTD2_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.440e-51
Identity = 181/598 (30.27%), Postives = 256/598 (42.81%), Query Frame = 0
Query:   36 ISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLHQQEVFDAES------------RIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGP------PLAGS--PIAAAADVAAPNGSAFVDPASDPTAADEAPVIDA-------------------SAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPL---KEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQ-PEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRA---------KGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLA----GVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRRPGSSXXXXXAQREGGXXDXXXXXXXXXXNEHSASDSGIGCEGG------GAVRTDAERREIGRKSKALIDWGRKEYLEGLGMEAELVYFCDRAFSPENCLLLAW 571
            ++K+AQ+K  +K+A   +   G W+ C   V RKNRYC+  R   +++CG H  E     S            R+PCPVD  H++ + +L  H+ +C   K A  + S  +Y + INSG          GS  P  A  D+     S   +  S PTA  +  +ID                    S+VW +  A          ++L  RI+ +Y+  VG ++  +L    C+ L   K+AA A K  L   RHI QQ+SIIGHM++  ++Q P   ++E+GAGRG+L LAL  T+PDS  +LVD A  R   D+ + +         +     RAK+DIR L+   +     K VV ++KHLCGV TDL+LRA     P                                  SRA             +  ++    G+AIA CCHH     DYV  AF    GF  ++F  +  +  W T                                              G+G EG       G  +TD  R  +GRK K +ID GR  YL  L M+  LV++CD + S ENCLLLAW
Sbjct:   14 MAKEAQKKR-RKEAKAAAMDGGQWERCMFKVARKNRYCNISRVPGSKFCGNHLPEGDQTSSKKSQKFKAACRRRVPCPVDGAHTVYEYDLAKHVLVCNRVKDADVMKSLPYYVENINSGTHCTSKTATTGSLGPTDARPDLEDGAQSEGKEEHSAPTAQQQHGIIDKLVRYCASTRVDDILVGFDLSSVWTVQLAID-------FAELRKRIDISYDACVGDLALEKLHHKCCDQLLVEKKAAGASKSVL---RHIDQQASIIGHMEQVKLLQDPGAAFVELGAGRGMLSLALAQTFPDSLFVLVDRAHTRGKADRFIGSDLKDSATGKQETKTLRAKIDIRHLNFAGMKELTDKSVVCMSKHLCGVATDLSLRAIAQTLPQP--------------------------------SRADTNNVAPAQSAPPSPSISTCFQGLAIALCCHHVCAWEDYVNPAFFLAQGFQPQEFELLTSMTSWTTC---------------------------------------------GMGLEGDAVEHILGISKTD--RAALGRKCKRIIDAGRAAYLNQLQMKTRLVHYCDISDSLENCLLLAW 521          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: D7FVJ5_ECTSI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 9.180e-49
Identity = 146/458 (31.88%), Postives = 207/458 (45.20%), Query Frame = 0
Query:   21 TGGTPPAEGNVKPLRISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPR-KRDAQYCGLHQQEVFDAESRIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLP--LPQG--KRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWATTFGPEGGGRR 473
            +G   P   +++    +   +R+  +K A   +  TG WD C   V  K RYC+Q R K  A +CG H  E  +   R+PCPVD  H++ +  L  H+KIC      + + +Q +YS+GINSGPPL                                                  +   ++ DL++R+E A+ + VG I    L PPE + L              R +V  +   G     G   P   ++EMGAG+G LG ++   +P SD+ +V+ +  R   +  L        RA++DIRDL+ G LP    +G  + VV VAKHLCGV TDLALRA LTL P      ++RD          +D GG       + + A           AA   + GVAIATCCHH  N  DYVGR F  + GF  RDF A+ R+  W +   P+ G R+
Sbjct:    2 SGNEAPRSKSIEEQTRADSRRRRQERKKAQLGALKTGVWDRCLYRVPGKGRYCAQHRSKHSASFCGTHMGETAEKGKRVPCPVDPNHTVFEQQLSSHVKICNLALQQARMVAQPYYSEGINSGPPL------------------LPGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDAFVVDLLSRVEAAHRDLVGEIPTEVLDPPEVQALH-------------RGLVGPA---GGDNGHGENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVST---RARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPRP----ESRD----------ADDGGHVGNGDPTAAPA-----------AATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWIS-LEPDAGARK 396          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: A0A7S2RS80_9STRA (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS80_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.180e-47
Identity = 166/520 (31.92%), Postives = 217/520 (41.73%), Query Frame = 0
Query:   81 AQYCGLH---QQEVFDAESRIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSD--LIARIERAYEEHVGSIS-ALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLR----------------AKGNPPF-RAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSR-FAAAHGLAGVAIATCCHHCVNLTDYVGRAFAER-CGFDKRDFAAIGRLGGWATTFGPEGGGRRPGSSXXXXXAQREGGXXDXXXXXXXXXXNEHSASDSGI-GCEGGGAVRTDAERR-EIGRKSKALIDWGRKEYLEGLGMEAELVYFCDRAFSPENCLLLAWLP 573
            + YCG+H    +E      R+PCPVD +H+I +  L+ HLK+C   K  S   ++ ++ +G+NSG                      VD   D  AA+                      G + SD  LIA I   Y   VG I    QLSP       E         K M+H  QQSSI+  + RR ++Q    ++E GAGRG+LGLA+    P + ++ V+ +  RN  D  LR                A     F RA+VDIR L+   L   QGK +V VAKHLCGV TDLALR+ LT  P    N   RD                                   SR +     + GV IATCCHHC +  D+  + F E   G  + DF  + R   WA     +   R PG +     A  +G              +   A  + I GC        D E R  IGR  K L D GR  YL  LG EAEL+++C    SPEN L+LAW P
Sbjct:    6 SMYCGVHINSGKESHKGRKRVPCPVDPSHTIFEDQLKAHLKVCPRAKEVSSQEARPYFQRGVNSG---------------------IVD---DKLAAN----------------------GRHRSDEELIALIPELYSAFVGDIQDKFQLSP-------EVTPDPNSSGKHMKHRTQQSSIVSSLARRDLLQDSLVFVEWGAGRGMLGLAIHSVLPSAPLIFVERSGVRNKADAALRREKGATDGAVASATTSANEQTTFSRARVDIRHLNLAGLDT-QGKPMVAVAKHLCGVATDLALRSLLTCPPRPDKN-PGRD----------------------------ARVDRWPSRGYPPCTAVRGVCIATCCHHCCSWQDFTAKGFFEEDLGLGQDDFRRMQRWSSWACNHPSDT--RVPGDA-----AANKGVTAAASAEEEVEHHSLPKAKPADIAGCR-------DVETRYRIGRMCKRLFDMGRVHYLRNLGFEAELIHYCPVDISPENALILAWRP 428          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: A0A024UNE5_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE5_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.230e-47
Identity = 144/434 (33.18%), Postives = 200/434 (46.08%), Query Frame = 0
Query:   21 TGGTPPAEGNVKPLRISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLHQQEVFDAES---------------RIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSP-IAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRA-ALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYV 437
            T  T  +  + KPL +S + +RK  K  A +D    G+W  C   + RKNR C+  R   + YCG H   + D E                R+PC +D +H++   +L+ HL IC   K A  + S  FYS+ INSG   AGS  +A   D A     A VD  S P++A +A +    A                 + L A+I+ AY+ +V SI   +L    C  L +   A   +   +RHI QQ+SI+GHM+ + +++P H Y E+GAGR +L LAL   YP S  +L+D A  R   D+ + A  N   RAK+DIR L+  K+     + +V ++KHLCGV TDL+LRA A TL P                                S   A        S F       G+AIA CCHH     DYV
Sbjct:    3 TETTTTSAASTKPLHVSDRLKRKREKSKAMKD----GEWTQCMFKLKRKNRLCNVARVEGSLYCGNH---IVDEEGVTSQKTKKHKQELCKRVPCTLDPSHTVYLFDLKKHLVICNKLKEAEAMRSLPFYSENINSGTHAAGSDHVAPPVDEALHVDDANVDEHSCPSSAKQASLFQTLAAMD-------------FNSLAAKIKSAYDANVPSIPTQKLDHAACTALLKEKQAAGANHSVLRHIQQQASILGHMEAKHLLRPSHVYCELGAGRAMLSLALTQIYPSSPFVLIDRAGSRGKADQHI-ATENKCTRAKIDIRHLNLAKMEQVANQPLVCLSKHLCGVATDLSLRALANTLPP--------------------------------SEGSAGSVPPPITSHF------VGLAIALCCHHACRWEDYV 377          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: H3GHR1_PHYRM (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR1_PHYRM)

HSP 1 Score: 180 bits (456), Expect = 5.170e-47
Identity = 140/448 (31.25%), Postives = 204/448 (45.54%), Query Frame = 0
Query:   36 ISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLH----------QQEVFDAESR--IPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHC-YIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGD-------KGLRAKGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWAT 463
            +++ AQRK  +K A  D++    WD C   V RKNR+C+  R   + +CG H          + + F A +R  +PCPVDA+H++ + +L  H+ +C   K A  +    +YS  INSG   +     + A    P G    +  S+P+A ++  +ID       A             DL  RIE AY+  VG +   +L    C+ L E           +RHI QQ+SIIGHM++  ++Q  +  ++E+GAGRG+L LAL   +PDS  +L+D A  R   D       KG     +   RAK+DIR L+   +     K VV ++KHLCGV TDL+LRA     P         + SGG                               S    +    G+AIA CCHH     DYV  +F E  GF  ++F  +  +  W T
Sbjct:   11 LARDAQRKR-RKQAKTDAKNGAQWDRCMFKVVRKNRFCNISRVPGSLFCGNHLPDSDAAVSSKSQKFKAATRRRVPCPVDASHTVYEFDLAKHVLVCNRVKDADAMKKLAYYSHNINSGSHSSVKEEGSTASSEEPAGDKENEH-SEPSAQEQQGIIDKLVAIDFA-------------DLRKRIEAAYDSCVGELLLEKLQHKCCDQLFEEKKKAGASKSVLRHIEQQASIIGHMEQAKLLQDSNAAFVELGAGRGMLSLALAQMFPDSLYVLIDRAHTRGKADRFIGGDNKGDEGAKDTTLRAKIDIRHLNFAGMQEILDKPVVCMSKHLCGVATDLSLRAVAQTLP---------ESSGG---------------------------KETSSEITVSSSFQGLAIALCCHHVCAWEDYVNPSFFEAQGFKPQEFELLTSMTSWTT 407          
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Match: G5AFJ3_PHYSP (tRNA:m(4)X modification enzyme TRM13 n=4 Tax=Phytophthora TaxID=4783 RepID=G5AFJ3_PHYSP)

HSP 1 Score: 179 bits (455), Expect = 2.160e-46
Identity = 141/457 (30.85%), Postives = 214/457 (46.83%), Query Frame = 0
Query:   36 ISKKAQRKLAKKDAGQDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLH----------QQEVFDAESR--IPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPA------SDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHMQRRGMVQPEHC-YIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKG---------NPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGVGTDLALRA-ALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKRDFAAIGRLGGWAT 463
            + + AQRK  +K A  +++  G WD C   V RKNRYC+  R   + +CG H          + + F A +R  +PCPVDA+H++ + +L  H+ +C   K A  +    +YS  INSG        AA++D A    +A  +        S+P+A ++  +ID        K    D      +DL  RI+ AYE  VG ++  +L    C+ L E           +RHI QQ+SIIGHM++  ++Q  +  ++E+GAGRG+L LAL   +PDS  +L+D A  R   D+ +  +G         +   RAK+DIR L+   +     K +V ++KHLCGV TDL+LRA A TL  + + + +   +S                                      +    G+AIA CCHH     DYV  AF +  GF   +F  +  +  W T
Sbjct:   10 LGRDAQRKR-RKQAKAEAKDGGQWDRCMFKVVRKNRYCNIARVPGSMFCGNHLPDSDAAVSKKSQKFKAATRRRVPCPVDASHTVYEYDLAKHVLVCNRVKDADIMKKLPYYSHNINSGGTHCSDNSAASSDTAEQEVAADKEKXXXXXEHSEPSAQEQQGIID--------KLLAID-----FADLRKRIDAAYESCVGELALEKLHHKCCDQLFEEKKKAGASQSVLRHIEQQTSIIGHMEQVKLLQDSNAAFVELGAGRGMLSLALAQMFPDSLYVLIDRAHTRGKADRFIGGEGKGEEAEKDSSTTLRAKIDIRHLNFAGMEEILNKPIVCMSKHLCGVATDLSLRAIAQTLPDSKSESSEGASNS-------------------------------------VSSSFQGLAIALCCHHVCAWEDYVNPAFFQAQGFKPEEFQLLTSMTSWTT 415          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351849 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZI09_9STRA0.000e+0100.00tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Tribo... [more]
A0A024UQA3_9STRA4.740e-6432.22tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphan... [more]
A0A8K1FML3_PYTOL3.360e-5829.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4X027_9STRA1.480e-5430.89tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phyto... [more]
A0A662WTD2_9STRA1.440e-5130.27tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Notho... [more]
D7FVJ5_ECTSI9.180e-4931.88tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A7S2RS80_9STRA1.180e-4731.92tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
A0A024UNE5_9STRA1.230e-4733.18tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphan... [more]
H3GHR1_PHYRM5.170e-4731.25tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phyto... [more]
G5AFJ3_PHYSP2.160e-4630.85tRNA:m(4)X modification enzyme TRM13 n=4 Tax=Phyto... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022776TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainPFAMPF05253zf-U11-48Kcoord: 97..120
e-value: 4.6E-6
score: 26.4
IPR022776TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainPROSITEPS51800ZF_CHHC_U11_48Kcoord: 97..124
score: 13.428396
IPR021721Zinc finger, CCCH-type, TRM13PFAMPF11722zf-TRM13_CCCHcoord: 62..88
e-value: 1.9E-6
score: 27.5
IPR007871Methyltransferase TRM13PFAMPF05206TRM13coord: 250..570
e-value: 8.7E-48
score: 163.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 465..507
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availablePANTHERPTHR12998:SF0TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOGcoord: 57..570
IPR039044tRNA:m(4)X modification enzyme Trm13PANTHERPTHR12998UNCHARACTERIZEDcoord: 57..570

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:127982..130956 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351849mRNA_10786Tribonema minus UTEX_B_3156 mRNAContig_101 127982..131081 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351849|estExt_Genemark1.C_Ctg_1010018 ID=Trimin1|351849|estExt_Genemark1.C_Ctg_1010018|Name=jgi.p|Trimin1|351849|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=582bp
MDHDQQEPRICEQPHLEAQPTGGTPPAEGNVKPLRISKKAQRKLAKKDAG
QDSQGTGDWDGCRMWVTRKNRYCSQPRKRDAQYCGLHQQEVFDAESRIPC
PVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPI
AAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEY
LSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIV
QQSSIIGHMQRRGMVQPEHCYIEMGAGRGLLGLALGLTYPDSDILLVDGA
KPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLPLPQGKRVVIVAKHLCGV
GTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGASNCGGGSGSR
ASDCGSGSGSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAFAERCGFDKR
DFAAIGRLGGWATTFGPEGGGRRPGSSSGGGAAQREGGGGDGDGDGDGDG
GNEHSASDSGIGCEGGGAVRTDAERREIGRKSKALIDWGRKEYLEGLGME
AELVYFCDRAFSPENCLLLAWLPGGKMRYCL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022776TRM13/UPF0224_CHHC_Znf_dom
IPR021721Znf_CCCH-type_TRM13
IPR007871Methyltransferase_TRM13
IPR039044Trm13