Trimin1|351842|estExt_Genemark1.C_Ctg_1010008 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351842
Unique NameTrimin1|351842|estExt_Genemark1.C_Ctg_1010008
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length189
Homology
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BLAST of jgi.p|Trimin1|351842 vs. uniprot
Match: A0A835ZDN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN8_9STRA)

HSP 1 Score: 171 bits (432), Expect = 9.220e-51
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0 
Query:    1 MALASTLHQWERVIELFEHAKSSDLALDTTVFDLVIAAYAHEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAPDVQAVNIALVAYLRLGDYDQGLKLAKEFASSGNQDTLTLTARLRAQKQEKEEGNMP 188
            MALASTLHQWERVIELFEHAKSSDLALDTTVFDLVIAAYAHEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAPDVQAVNIALVAYLRLGDYDQGLKLAKEFASSGNQDTLTLTARLRAQKQEKEEGNMP
Sbjct:    1 MALASTLHQWERVIELFEHAKSSDLALDTTVFDLVIAAYAHEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAPDVQAVNIALVAYLRLGDYDQGLKLAKEFASSGNQDTLTLTARLRAQKQEKEEGNMP 188
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351842 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDN8_9STRA9.220e-51100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..187
e-value: 1.1E-31
score: 112.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 66..98
e-value: 1.1E-4
score: 20.1
coord: 32..63
e-value: 2.9E-5
score: 21.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 28..73
e-value: 2.9E-8
score: 33.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 63..97
score: 9.108898
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 28..62
score: 10.194067
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 6..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:73578..74738 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351842mRNA_10773Tribonema minus UTEX_B_3156 mRNAContig_101 73567..74792 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351842|estExt_Genemark1.C_Ctg_1010008 ID=Trimin1|351842|estExt_Genemark1.C_Ctg_1010008|Name=jgi.p|Trimin1|351842|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=189bp
MALASTLHQWERVIELFEHAKSSDLALDTTVFDLVIAAYAHEGQWELALA
MLEDMWDRRLNPSETTYNCVVDVLQVAGQWRKVIEMINHIKARGEEPSAM
TYKAAFLGCAQAQEWKTLLELFADLKATFLAPDVQAVNIALVAYLRLGDY
DQGLKLAKEFASSGNQDTLTLTARLRAQKQEKEEGNMP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat