mRNA_10773 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351842
Unique NamemRNA_10773
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351842 vs. uniprot
Match: A0A835ZDN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN8_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.410e-51
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 
Query:   55 MALASTLHQWERVIELFEHAKSSDLALDTTVFDLVIAAYAHEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAPDVQAVNIALVAYLRLGDYDQGLKLAKEFASSGNQDTLTLTARLRAQKQEKEEGNMP 618
            MALASTLHQWERVIELFEHAKSSDLALDTTVFDLVIAAYAHEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAPDVQAVNIALVAYLRLGDYDQGLKLAKEFASSGNQDTLTLTARLRAQKQEKEEGNMP
Sbjct:    1 MALASTLHQWERVIELFEHAKSSDLALDTTVFDLVIAAYAHEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAPDVQAVNIALVAYLRLGDYDQGLKLAKEFASSGNQDTLTLTARLRAQKQEKEEGNMP 188
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351842 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDN8_9STRA3.410e-51100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:73567..74792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351842|estExt_Genemark1.C_Ctg_1010008
Hectar predicted targeting categoryother localisation
TranscriptId352164
TrackFilteredModels1
ProteinId351842
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351842gene_10773Tribonema minus UTEX_B_3156 geneContig_101 73567..74792 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10773_2exon_10773_2Tribonema minus UTEX_B_3156 exonContig_101 73567..73919 -
exon_10773_1exon_10773_1Tribonema minus UTEX_B_3156 exonContig_101 74514..74792 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10773UTR3_10773Tribonema minus UTEX_B_3156 three_prime_UTRContig_101 73567..73577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10773CDS_10773Tribonema minus UTEX_B_3156 CDSContig_101 74514..74738 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10773UTR5_10773Tribonema minus UTEX_B_3156 five_prime_UTRContig_101 74739..74792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351842Trimin1|351842|estExt_Genemark1.C_Ctg_1010008Tribonema minus UTEX_B_3156 polypeptideContig_101 73578..74738 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10773 ID=mRNA_10773|Name=jgi.p|Trimin1|351842|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=632bp|location=Sequence derived from alignment at Contig_101:73567..74792- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTTGTTTCGACGCCGCCACCTCCTCCCACGAGTGTCAAGGACCTCCACTA
CGACATGGCGCTGGCTAGCACGCTGCACCAGTGGGAGCGAGTGATCGAGT
TGTTTGAACATGCAAAATCAAGCGACCTGGCACTCGACACGACGGTGTTT
GATCTCGTGATCGCAGCCTACGCTCATGAGGGACAGTGGGAGCTGGCTCT
CGCCATGCTGGAGGATATGTGGGACAGGCGGCTGAATCCGTCGGAAACGA
CCTATAATTGCGTGGTTGACGTCTTACAGGTGGCGGGCCAGTGGCGCAAA
GTAATTGAGATGATCAACCACATCAAAGCCAGAGGTGAGGAGCCAAGCGC
CATGACATACAAGGCAGCCTTCCTAGGCTGTGCTCAAGCCCAAGAGTGGA
AAACGCTGCTAGAGCTGTTTGCCGATCTGAAGGCCACGTTTCTTGCGCCG
GACGTGCAAGCAGTCAACATCGCTCTGGTGGCGTACTTGAGGCTGGGGGA
CTATGATCAAGGGCTGAAACTGGCAAAGGAGTTCGCCAGCAGCGGCAATC
AGGATACGCTGACGCTGACTGCCAGGCTCAGAGCTCAAAAGCAAGAAAAG
GAAGAGGGCAACATGCCGTAATATGTAGGCAC
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protein sequence of jgi.p|Trimin1|351842

>Trimin1|351842|estExt_Genemark1.C_Ctg_1010008 ID=Trimin1|351842|estExt_Genemark1.C_Ctg_1010008|Name=jgi.p|Trimin1|351842|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=189bp
MALASTLHQWERVIELFEHAKSSDLALDTTVFDLVIAAYAHEGQWELALA
MLEDMWDRRLNPSETTYNCVVDVLQVAGQWRKVIEMINHIKARGEEPSAM
TYKAAFLGCAQAQEWKTLLELFADLKATFLAPDVQAVNIALVAYLRLGDY
DQGLKLAKEFASSGNQDTLTLTARLRAQKQEKEEGNMP*
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mRNA from alignment at Contig_101:73567..74792-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10773 ID=mRNA_10773|Name=jgi.p|Trimin1|351842|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1226bp|location=Sequence derived from alignment at Contig_101:73567..74792- (Tribonema minus UTEX_B_3156 )
TTTGTTTCGACGCCGCCACCTCCTCCCACGAGTGTCAAGGACCTCCACTA
CGACATGGCGCTGGCTAGCACGCTGCACCAGTGGGAGCGAGTGATCGAGT
TGTTTGAACATGCAAAATCAAGCGACCTGGCACTCGACACGACGGTGTTT
GATCTCGTGATCGCAGCCTACGCTCATGAGGGACAGTGGGAGCTGGCTCT
CGCCATGCTGGAGGATATGTGGGACAGGCGGCTGAATCCGTCGGAAACGA
CCTATAATTGCGTGGTTGACGTCTTACAGGTGAGTTGCTATTGCCAACTG
TGCTGCCCTTCAGCAGAAGCTAACATTGTTGACAAGCTCTCGCAAAAGCC
TAGGATCACTTCGAGGCAACGTGACTTGCCACCACTGCATCTTGTTGCTT
CTGCTTACTTCCACTTTGACCCACTTGACTTGCTTAGCAAAACAGCAGCA
CACGGCATACCACACAGCATCATATGATGTGAATGTCTCCAGGTAGTGCA
GAGGGGTCTGGGCTCTGCACATGGGTTGTGTTGCTGCTCAACAAAGATGA
CTGGCTCAGCAAAACTTATGATGTTGCTTGCATGTTCTGACAGCCATAAT
TTGGTGCAGTTCATCTGGAGTCTGCCAAGACCTAGCCCTCTTCATTGCTA
TTTGCTGCTAATCAGTGTTGCGCGCGCAGTTGCCCAGTTCTGTTATTAAC
CTGTGTAAGCCTCAGCACAAACGGCCAGACGGTTTGAGGGTTTTGCCAGC
AAGCCAACATTGCCTTCACCCCAAACCATAAGTCACGTTTCAGCTCAATG
CCGCAGCAACAGAAACCCAGTCAATGGCCCAAAGCGTTTCTACAGCGCAC
TGACCAGCACTTTGTTTTGGCAGGTGGCGGGCCAGTGGCGCAAAGTAATT
GAGATGATCAACCACATCAAAGCCAGAGGTGAGGAGCCAAGCGCCATGAC
ATACAAGGCAGCCTTCCTAGGCTGTGCTCAAGCCCAAGAGTGGAAAACGC
TGCTAGAGCTGTTTGCCGATCTGAAGGCCACGTTTCTTGCGCCGGACGTG
CAAGCAGTCAACATCGCTCTGGTGGCGTACTTGAGGCTGGGGGACTATGA
TCAAGGGCTGAAACTGGCAAAGGAGTTCGCCAGCAGCGGCAATCAGGATA
CGCTGACGCTGACTGCCAGGCTCAGAGCTCAAAAGCAAGAAAAGGAAGAG
GGCAACATGCCGTAATATGTAGGCAC
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Coding sequence (CDS) from alignment at Contig_101:73567..74792-

>mRNA_10773 ID=mRNA_10773|Name=jgi.p|Trimin1|351842|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=567bp|location=Sequence derived from alignment at Contig_101:73567..74792- (Tribonema minus UTEX_B_3156 )
ATGGCGCTGGCTAGCACGCTGCACCAGTGGGAGCGAGTGATCGAGTTGTT
TGAACATGCAAAATCAAGCGACCTGGCACTCGACACGACGGTGTTTGATC
TCGTGATCGCAGCCTACGCTCATGAGGGACAGTGGGAGCTGGCTCTCGCC
ATGCTGGAGGATATGTGGGACAGGCGGCTGAATCCGTCGGAAACGACCTA
TAATTGCGTGGTTGACGTCTTACAGGTGGCGGGCCAGTGGCGCAAAGTAA
TTGAGATGATCAACCACATCAAAGCCAGAGGTGAGGAGCCAAGCGCCATG
ACATACAAGGCAGCCTTCCTAGGCTGTGCTCAAGCCCAAGAGTGGAAAAC
GCTGCTAGAGCTGTTTGCCGATCTGAAGGCCACGTTTCTTGCGCCGGACG
TGCAAGCAGTCAACATCGCTCTGGTGGCGTACTTGAGGCTGGGGGACTAT
GATCAAGGGCTGAAACTGGCAAAGGAGTTCGCCAGCAGCGGCAATCAGGA
TACGCTGACGCTGACTGCCAGGCTCAGAGCTCAAAAGCAAGAAAAGGAAG
AGGGCAACATGCCGTAA
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