Trimin1|351792|estExt_Genemark1.C_Ctg_1000026 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351792
Unique NameTrimin1|351792|estExt_Genemark1.C_Ctg_1000026
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length360
Homology
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A835ZK76_9STRA (Histone-like transcription factor (CBF/NF-Y) and archaeal histone-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK76_9STRA)

HSP 1 Score: 518 bits (1333), Expect = 2.680e-182
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0
Query:    1 MQEGAVPAHTQQQMPAAQEAGGMVGGVVPRQDHLQAAPMVTTAPAAAAPLGAGAWEVFARENREKVRADHPELSVAQQTQVLAQIWQQLDRPTVQMYMEAARQESLRMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPMETDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT 359
            MQEGAVPAHTQQQMPAAQEAGGMVGGVVPRQDHLQAAPMVTTAPAAAAPLGAGAWEVFARENREKVRADHPELSVAQQTQVLAQIWQQLDRPTVQMYMEAARQESLRMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPMETDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT
Sbjct:    1 MQEGAVPAHTQQQMPAAQEAGGMVGGVVPRQDHLQAAPMVTTAPAAAAPLGAGAWEVFARENREKVRADHPELSVAQQTQVLAQIWQQLDRPTVQMYMEAARQESLRMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPMETDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT 359          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 8.000e-30
Identity = 71/186 (38.17%), Postives = 99/186 (53.23%), Query Frame = 0
Query:  172 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYH-NLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKP 356
            SAW+LF+ + R++V+ +NPD++ +QQ K++S+IW+ L     E Y  RAR + KRY    AD                                        S E VCPMGRI RIIKLD +V +VTKEATAL+ KAM+LF   +A+ S+ +     RR +K QDI   +H  D+++W K DF  P
Sbjct:  145 SAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQ-----------------------STELVCPMGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLP 307          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 5.380e-29
Identity = 71/186 (38.17%), Postives = 99/186 (53.23%), Query Frame = 0
Query:  172 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYH-NLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKP 356
            SAW+LF+ + R++V+ +NPD++ +QQ K++S+IW+ L     E Y  RAR + KRY    AD                                        S E VCPMGRI RIIKLD +V +VTKEATAL+ KAM+LF   +A+ S+ +     RR +K QDI   +H  D+++W K DF  P
Sbjct:  252 SAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQ-----------------------STELVCPMGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLP 414          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A7S2FZW8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZW8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 6.330e-21
Identity = 60/193 (31.09%), Postives = 93/193 (48.19%), Query Frame = 0
Query:  168 RRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHN-LADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT 359
            +R   A+  F + YR+ V    P LS   QSK L+  W+ L     + ++ +   E++ +   + D +                                  +   + E V P+GR+RR  KLDP+V N+TKEATALV KA + FL Q+A+ S+++ +  GRR +KT DI  CV+ L +Y W + DF +   T
Sbjct:    6 KRNQEAFTSFCHSYRETV----PGLSVLDQSKALADRWRSLSEAEKDSFMPKVADENQGHQREIIDQS---------------------TLPVEPAKSSKGKKDSSAFEMVIPVGRVRRTCKLDPDVKNITKEATALVAKATERFLAQIAEESFKISSLSGRRTLKTDDIRDCVNRLPQYEWLRDDFPQSSNT 173          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: D8LIR0_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR0_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.080e-20
Identity = 57/191 (29.84%), Postives = 92/191 (48.17%), Query Frame = 0
Query:  169 RGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT 359
            R  SAW+LF+ D R+ VR E+P L+     K+LS++W+ L    V  Y + A  + +R  N   + G                                   P SL  V P+ R+R+ ++LDP VGN++KE   LV KA ++F+  LA  +W +  + GR++++  D+A  V A  E +W K +F +   +
Sbjct:  183 RARSAWMLFLADNREGVRKEHPGLAVGPMQKILSEMWKALGEAEVARYAKLAAEDKERVKNELAAAGLTKLPTKNSSSAAVAGG------------------PTSL--VLPLARVRKTVRLDPSVGNISKEGLLLVTKATEVFMAVLADHAWNIGRQTGRKSVRPCDVADFVFAAPEMYWLKDEFREERSS 353          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: K3WHB8_GLOUD (HMG box domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHB8_GLOUD)

HSP 1 Score: 84.0 bits (206), Expect = 3.500e-15
Identity = 47/186 (25.27%), Postives = 80/186 (43.01%), Query Frame = 0
Query:  168 RRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADF 353
            +R  S++++F ND R +V  ENP L   +  K++S  W++L     E Y++ A  + +RY      N                                      +   V  +GR+++I+  DPEVG V++EA   + KA +L  + LA + +E      +R IK+ DI   + +     W + DF
Sbjct:    5 KRALSSYMIFCNDRRKQVAEENPGLRIGEIQKLISTQWKELSEQEKEHYVQLAAKDKERYEQEKRDNPVEVEEANSETGAQMAAAS-------------------ATACVYQLGRVKKIVHTDPEVGKVSREALIAISKASELLAQFLATKGYENALFQNKRQIKSSDITRAIQSTGSLDWLREDF 171          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A4D9D0Z2_9STRA (HMG box domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0Z2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.310e-15
Identity = 55/187 (29.41%), Postives = 91/187 (48.66%), Query Frame = 0
Query:  172 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMG 358
            SAW+LF  + R+ ++ E P L  ++Q K++S+ W+ LD      ++ERA  + +RY                                         R  ++ E + P+ RIR+I+KLDPEV  V+KEA  LV KA +LFL+ + + S +      RR +K+ D+A+ +    ++ + + DF  PMG
Sbjct:  167 SAWMLFTAEARELLKKEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAANDKERYQE----------EKLRWEGNQAAKAVPKGGKELRKDVEAGRR--LADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHK--ASGRRRTLKSDDVAVAMRRQGKFAFLRPDF--PMG 337          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: W2MGZ3_PHYPR (HMG box domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2MGZ3_PHYPR)

HSP 1 Score: 80.9 bits (198), Expect = 3.860e-14
Identity = 46/186 (24.73%), Postives = 78/186 (41.94%), Query Frame = 0
Query:  168 RRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADF 353
            ++  S++++F N+ R +V  ENP        K++S  W++L     + Y+E A  +  RY      N                                      S   + P+GR+RRI++ DP+VG V+K+A   + KA +LF + L  +S+E      +R IK  D+   +       W + DF
Sbjct:    5 KKPQSSYLIFCNERRKQVMDENPGTRIGDIQKIISAQWKELKPEEKDVYVELAAKDKARYEQELLDNPQVNEEPTAEDKAAQD----------------------SNACIYPLGRVRRIVQSDPDVGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDF 168          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: G4YKY3_PHYSP (HMG box domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YKY3_PHYSP)

HSP 1 Score: 80.5 bits (197), Expect = 5.100e-14
Identity = 44/186 (23.66%), Postives = 79/186 (42.47%), Query Frame = 0
Query:  168 RRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADF 353
            ++  S+++LF N+ R +V  ENP        K++S  W++L     E Y++ A  + +RY      N                                      S   + P+GR+R+I++ DP+VG ++K+A   + KA +LF + L  +S+E      +R +K  D+   +       W + DF
Sbjct:    5 KKPQSSYLLFCNERRKQVMDENPGARIGDIQKIISAQWKELKPEEKEVYVQLAAKDKERYQQELLDNPQIDAEPTAEGRAAHD----------------------SNACIYPLGRVRKIVQSDPDVGKISKDALIAIAKASELFAQFLGTKSYEQALYRNKRQVKASDVTRTIQTTASLDWLREDF 168          
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A0P1ANA4_PLAHL (Nuclear y ccaat-box binding factor c subunit nf yc n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANA4_PLAHL)

HSP 1 Score: 78.6 bits (192), Expect = 2.520e-13
Identity = 45/196 (22.96%), Postives = 82/196 (41.84%), Query Frame = 0
Query:  164 METDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT 359
            M + ++  S++++F N+ R  V +ENP +   +  K++S  W +L     + Y+E A  +  RY      +                                      S   + P+GR+R+I++ DP++G V+K+A   + KA +LF + L  +S+E      +R IK  D+   +       W + DF     T
Sbjct:    1 MMSVKKPQSSYLIFCNERRRDVMNENPGVRIGEIQKIISAKWNELTTEEKDVYVELANKDKARYKQEILDHPQVDEEINLKEKMAQN----------------------SNACIYPLGRVRKIVQSDPDIGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDFPDSKHT 174          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351792 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZK76_9STRA2.680e-182100.00Histone-like transcription factor (CBF/NF-Y) and a... [more]
D7G2P1_ECTSI8.000e-3038.17HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KV94_9PHAE5.380e-2938.17HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2FZW8_9STRA6.330e-2131.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LIR0_ECTSI2.080e-2029.84HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
K3WHB8_GLOUD3.500e-1525.27HMG box domain-containing protein n=1 Tax=Globispo... [more]
A0A4D9D0Z2_9STRA6.310e-1529.41HMG box domain-containing protein n=2 Tax=Monodops... [more]
W2MGZ3_PHYPR3.860e-1424.73HMG box domain-containing protein n=10 Tax=Phytoph... [more]
G4YKY3_PHYSP5.100e-1423.66HMG box domain-containing protein n=4 Tax=Phytopht... [more]
A0A0P1ANA4_PLAHL2.520e-1322.96Nuclear y ccaat-box binding factor c subunit nf yc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 47..119
e-value: 0.29
score: 18.7
coord: 166..236
e-value: 0.0013
score: 28.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 169..229
e-value: 5.5E-9
score: 36.3
coord: 54..112
e-value: 2.4E-6
score: 27.8
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 167..235
score: 11.678664
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 48..116
score: 9.847432
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 279..340
e-value: 2.3E-16
score: 59.8
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 267..351
e-value: 5.3E-19
score: 70.6
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 278..348
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 41..115
e-value: 1.5E-8
score: 36.8
coord: 147..232
e-value: 2.4E-12
score: 49.1
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 53..111
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 167..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availablePANTHERPTHR48112:SF22HIGH MOBILITY GROUP PROTEIN DSP1coord: 41..229
NoneNo IPR availablePANTHERPTHR48112HIGH MOBILITY GROUP PROTEIN DSP1coord: 41..229
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 58..107
e-value: 4.49143E-6
score: 41.8446
NoneNo IPR availableCDDcd00084HMG-boxcoord: 168..227
e-value: 1.92616E-10
score: 54.1619

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:199471..202768 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351792mRNA_10018Tribonema minus UTEX_B_3156 mRNAContig_100 199423..202979 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351792|estExt_Genemark1.C_Ctg_1000026 ID=Trimin1|351792|estExt_Genemark1.C_Ctg_1000026|Name=jgi.p|Trimin1|351792|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=360bp
MQEGAVPAHTQQQMPAAQEAGGMVGGVVPRQDHLQAAPMVTTAPAAAAPL
GAGAWEVFARENREKVRADHPELSVAQQTQVLAQIWQQLDRPTVQMYMEA
ARQESLRMQQQQQQQAVGNGAVGGGGGGGGGGGGMGVPQEQMQPVPQQQQ
LQQQQQQQQQSLPMETDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKV
LSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGGAAAQGGGGGPSGRG
ARGRDDDHGGFGGGSAQRRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEA
TALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCK
ADFEKPMGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
IPR036910HMG_box_dom_sf