mRNA_10018 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351792
Unique Name	mRNA_10018
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A835ZK76_9STRA (Histone-like transcription factor (CBF/NF-Y) and archaeal histone-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK76_9STRA)

HSP 1 Score: 517 bits (1331), Expect = 1.430e-180
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 1

Query:   49 MQEGAVPAHTQQQMPAAQEAGGMVGGVVPRQDHLQAAPMVTTAPAAAAPLGAGAWEVFARENREKVRADHPELSVAQQTQVLAQIWQQLDRPTVQMYMEAARQESLRMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPMETDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT 1125
            MQEGAVPAHTQQQMPAAQEAGGMVGGVVPRQDHLQAAPMVTTAPAAAAPLGAGAWEVFARENREKVRADHPELSVAQQTQVLAQIWQQLDRPTVQMYMEAARQESLRMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPMETDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT
Sbjct:    1 MQEGAVPAHTQQQMPAAQEAGGMVGGVVPRQDHLQAAPMVTTAPAAAAPLGAGAWEVFARENREKVRADHPELSVAQQTQVLAQIWQQLDRPTVQMYMEAARQESLRMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPMETDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT 359

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.700e-29
Identity = 71/186 (38.17%), Postives = 99/186 (53.23%), Query Frame = 1

Query:  562 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYH-NLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKP 1116
            SAW+LF+ + R++V+ +NPD++ +QQ K++S+IW+ L     E Y  RAR + KRY    AD                                        S E VCPMGRI RIIKLD +V +VTKEATAL+ KAM+LF   +A+ S+ +     RR +K QDI   +H  D+++W K DF  P
Sbjct:  145 SAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQ-----------------------STELVCPMGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLP 307

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.510e-28
Identity = 71/186 (38.17%), Postives = 99/186 (53.23%), Query Frame = 1

Query:  562 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYH-NLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKP 1116
            SAW+LF+ + R++V+ +NPD++ +QQ K++S+IW+ L     E Y  RAR + KRY    AD                                        S E VCPMGRI RIIKLD +V +VTKEATAL+ KAM+LF   +A+ S+ +     RR +K QDI   +H  D+++W K DF  P
Sbjct:  252 SAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQ-----------------------STELVCPMGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLP 414

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A7S2FZW8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZW8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.420e-20
Identity = 63/200 (31.50%), Postives = 97/200 (48.50%), Query Frame = 1

Query:  550 RRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHN-LADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPM--GT*RPPA 1140
            +R   A+  F + YR+ V    P LS   QSK L+  W+ L     + ++ +   E++ +   + D +                                  +   + E V P+GR+RR  KLDP+V N+TKEATALV KA + FL Q+A+ S+++ +  GRR +KT DI  CV+ L +Y W + DF +    GT + PA
Sbjct:    6 KRNQEAFTSFCHSYRETV----PGLSVLDQSKALADRWRSLSEAEKDSFMPKVADENQGHQREIIDQS---------------------TLPVEPAKSSKGKKDSSAFEMVIPVGRVRRTCKLDPDVKNITKEATALVAKATERFLAQIAEESFKISSLSGRRTLKTDDIRDCVNRLPQYEWLRDDFPQSSNTGTSKDPA 180

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: D8LIR0_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 8.430e-20
Identity = 57/187 (30.48%), Postives = 91/187 (48.66%), Query Frame = 1

Query:  553 RGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEK 1113
            R  SAW+LF+ D R+ VR E+P L+     K+LS++W+ L    V  Y + A  + +R  N   + G                                   P SL  V P+ R+R+ ++LDP VGN++KE   LV KA ++F+  LA  +W +  + GR++++  D+A  V A  E +W K +F +
Sbjct:  183 RARSAWMLFLADNREGVRKEHPGLAVGPMQKILSEMWKALGEAEVARYAKLAAEDKERVKNELAAAGLTKLPTKNSSSAAVAGG------------------PTSL--VLPLARVRKTVRLDPSVGNISKEGLLLVTKATEVFMAVLADHAWNIGRQTGRKSVRPCDVADFVFAAPEMYWLKDEFRE 349

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: K3WHB8_GLOUD (HMG box domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHB8_GLOUD)

HSP 1 Score: 84.0 bits (206), Expect = 6.860e-15
Identity = 47/186 (25.27%), Postives = 80/186 (43.01%), Query Frame = 1

Query:  550 RRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADF 1107
            +R  S++++F ND R +V  ENP L   +  K++S  W++L     E Y++ A  + +RY      N                                      +   V  +GR+++I+  DPEVG V++EA   + KA +L  + LA + +E      +R IK+ DI   + +     W + DF
Sbjct:    5 KRALSSYMIFCNDRRKQVAEENPGLRIGEIQKLISTQWKELSEQEKEHYVQLAAKDKERYEQEKRDNPVEVEEANSETGAQMAAAS-------------------ATACVYQLGRVKKIVHTDPEVGKVSREALIAISKASELLAQFLATKGYENALFQNKRQIKSSDITRAIQSTGSLDWLREDF 171

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A4D9D0Z2_9STRA (HMG box domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0Z2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.930e-14
Identity = 55/187 (29.41%), Postives = 91/187 (48.66%), Query Frame = 1

Query:  562 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMG 1122
            SAW+LF  + R+ ++ E P L  ++Q K++S+ W+ LD      ++ERA  + +RY                                         R  ++ E + P+ RIR+I+KLDPEV  V+KEA  LV KA +LFL+ + + S +      RR +K+ D+A+ +    ++ + + DF  PMG
Sbjct:  167 SAWMLFTAEARELLKKEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAANDKERYQE----------EKLRWEGNQAAKAVPKGGKELRKDVEAGRR--LADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHK--ASGRRRTLKSDDVAVAMRRQGKFAFLRPDF--PMG 337

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: W2MGZ3_PHYPR (HMG box domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2MGZ3_PHYPR)

HSP 1 Score: 82.0 bits (201), Expect = 2.810e-14
Identity = 50/198 (25.25%), Postives = 82/198 (41.41%), Query Frame = 1

Query:  550 RRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKPMGT*RPPAA 1143
            ++  S++++F N+ R +V  ENP        K++S  W++L     + Y+E A  +  RY      N                                      S   + P+GR+RRI++ DP+VG V+K+A   + KA +LF + L  +S+E      +R IK  D+   +       W + DF     T R  AA
Sbjct:    5 KKPQSSYLIFCNERRKQVMDENPGTRIGDIQKIISAQWKELKPEEKDVYVELAAKDKARYEQELLDNPQVNEEPTAEDKAAQD----------------------SNACIYPLGRVRRIVQSDPDVGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDFPDVKPTPRDIAA 180

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: G4YKY3_PHYSP (HMG box domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YKY3_PHYSP)

HSP 1 Score: 80.5 bits (197), Expect = 9.300e-14
Identity = 44/186 (23.66%), Postives = 79/186 (42.47%), Query Frame = 1

Query:  550 RRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADF 1107
            ++  S+++LF N+ R +V  ENP        K++S  W++L     E Y++ A  + +RY      N                                      S   + P+GR+R+I++ DP+VG ++K+A   + KA +LF + L  +S+E      +R +K  D+   +       W + DF
Sbjct:    5 KKPQSSYLLFCNERRKQVMDENPGARIGDIQKIISAQWKELKPEEKEVYVQLAAKDKERYQQELLDNPQIDAEPTAEGRAAHD----------------------SNACIYPLGRVRKIVQSDPDVGKISKDALIAIAKASELFAQFLGTKSYEQALYRNKRQVKASDVTRTIQTTASLDWLREDF 168

[Close]

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Match: A0A0P1ANA4_PLAHL (Nuclear y ccaat-box binding factor c subunit nf yc n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANA4_PLAHL)

HSP 1 Score: 78.2 bits (191), Expect = 6.020e-13
Identity = 44/190 (23.16%), Postives = 81/190 (42.63%), Query Frame = 1

Query:  538 METDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADF 1107
            M + ++  S++++F N+ R  V +ENP +   +  K++S  W +L     + Y+E A  +  RY      +                                      S   + P+GR+R+I++ DP++G V+K+A   + KA +LF + L  +S+E      +R IK  D+   +       W + DF
Sbjct:    1 MMSVKKPQSSYLIFCNERRRDVMNENPGVRIGEIQKIISAKWNELTTEEKDVYVELANKDKARYKQEILDHPQVDEEINLKEKMAQN----------------------SNACIYPLGRVRKIVQSDPDIGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDF 168

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351792 vs. uniprot

BLAST of jgi.p|Trimin1|351792 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZK76_9STRA	1.430e-180	100.00	Histone-like transcription factor (CBF/NF-Y) and a...	[more]
D7G2P1_ECTSI	3.700e-29	38.17	HMG box domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A6H5KV94_9PHAE	2.510e-28	38.17	HMG box domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A7S2FZW8_9STRA	2.420e-20	31.50	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
D8LIR0_ECTSI	8.430e-20	30.48	HMG box domain-containing protein n=1 Tax=Ectocarp...	[more]
K3WHB8_GLOUD	6.860e-15	25.27	HMG box domain-containing protein n=1 Tax=Globispo...	[more]
A0A4D9D0Z2_9STRA	1.930e-14	29.41	HMG box domain-containing protein n=2 Tax=Monodops...	[more]
W2MGZ3_PHYPR	2.810e-14	25.25	HMG box domain-containing protein n=10 Tax=Phytoph...	[more]
G4YKY3_PHYSP	9.300e-14	23.66	HMG box domain-containing protein n=4 Tax=Phytopht...	[more]
A0A0P1ANA4_PLAHL	6.020e-13	23.16	Nuclear y ccaat-box binding factor c subunit nf yc...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_100	contig	Contig_100:199423..202979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351792\|estExt_Genemark1.C_Ctg_1000026
Description	CHDNT (NUC034) domain
COG category	K
Max annot lvl	121069\|Pythiales
EggNOG OGs	COG5648@1\|root,KOG0381@2759\|Eukaryota,1MFAC@121069\|Pythiales
Evalue	5.74e-16
Seed ortholog	65071.PYU1_T004360
Hectar predicted targeting category	other localisation
Ec32 ortholog description	DPB3 class protein with histone-like transcription factor (NF-YC subunit) and high mobility group domains
Ec32 ortholog	Ec-11_002940.1
TranscriptId	352114
Track	FilteredModels1
ProteinId	351792

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351792	gene_10018	Tribonema minus UTEX_B_3156	gene	Contig_100 199423..202979 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351792	Trimin1\|351792\|estExt_Genemark1.C_Ctg_1000026	Tribonema minus UTEX_B_3156	polypeptide	Contig_100 199471..202768 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10018_1	exon_10018_1	Tribonema minus UTEX_B_3156	exon	Contig_100 199423..199476 +
exon_10018_2	exon_10018_2	Tribonema minus UTEX_B_3156	exon	Contig_100 199590..199688 +
exon_10018_3	exon_10018_3	Tribonema minus UTEX_B_3156	exon	Contig_100 200062..200382 +
exon_10018_4	exon_10018_4	Tribonema minus UTEX_B_3156	exon	Contig_100 201226..201279 +
exon_10018_5	exon_10018_5	Tribonema minus UTEX_B_3156	exon	Contig_100 202169..202979 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_10018	UTR5_10018	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_100 199423..199470 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10018	CDS_10018	Tribonema minus UTEX_B_3156	CDS	Contig_100 199471..199476 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10018	UTR3_10018	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_100 202769..202979 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_100:199423..202979+
coding sequence from alignment at Contig_100:199423..202979+

spliced messenger RNA

>mRNA_10018 ID=mRNA_10018|Name=jgi.p|Trimin1|351792|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1339bp|location=Sequence derived from alignment at Contig_100:199423..202979+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGAAGCCGCGTTCGAAGCAGCCGTGTGATCAAACCTGGGACGCGCTAT
GCAGGAAGGAGCTGTGCCGGCGCACACGCAGCAGCAAATGCCAGCTGCGC
AGGAAGCCGGAGGAATGGTCGGGGGAGTTGTGCCGCGACAGGATCATCTG
CAGGCTGCCCCGATGGTGACTACTGCGCCAGCCGCTGCCGCGCCACTAGG
CGCAGGTGCATGGGAGGTGTTTGCCCGCGAGAACAGGGAGAAGGTCAGAG
CGGACCATCCCGAGCTGAGCGTTGCGCAGCAGACGCAGGTCCTGGCTCAG
ATCTGGCAGCAGCTAGACAGACCAACAGTGCAGATGTACATGGAGGCTGC
ACGGCAGGAGAGCCTGCGCATGCAGCAGCAGCAGCAGCAGCAGGCGGTTG
GTAATGGCGCAGTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
ATGGGGGTGCCGCAGGAGCAGATGCAGCCAGTGCCGCAGCAGCAACAGCT
GCAGCAGCAGCAGCAGCAGCAGCAACAGTCCCTGCCCATGGAGACGGACA
GGCGCGGCGCGTCCGCCTGGATCCTCTTTGTCAACGACTACAGAGACAGG
GTGCGCTCCGAAAACCCCGACCTCAGCTGCTCGCAGCAGTCCAAGGTCCT
CAGCCAGATCTGGCAGCAGCTGGACAGGCCCACAGTGGAGGGCTACATAG
AGCGCGCGCGCGCAGAGAGCAAGCGCTACCACAACCTCGCCGACAGCAAC
GGCGGCGCCGCCGCGCAGGGCGGGGGAGGGGGACCGTCAGGCAGAGGCGC
GCGCGGGAGGGACGATGATCATGGCGGTTTTGGGGGTGGCAGTGCTCAGC
GGAGGCCGCCTGTGAGCTTGGAGGCGGTGTGCCCTATGGGCCGCATACGC
AGAATCATCAAGCTGGACCCGGAGGTGGGGAACGTTACGAAGGAGGCGAC
AGCGCTGGTGGAGAAGGCCATGCAGCTGTTCCTGGAGCAACTCGCGCAGC
GCAGCTGGGAGATGTGCACGGAGGACGGGCGGCGCAACATCAAGACGCAG
GACATTGCTATGTGCGTGCACGCGCTCGACGAGTACCACTGGTGCAAGGC
CGACTTCGAGAAGCCCATGGGGACATGACGGCCTCCCGCCGCTGCCGCTG
CTGCGGCGTTGAGCGCTGCTGCCACACGGTGGCAGTGCTCATCTGCCGGA
CTTTGCAGCGCCGCCGTGCGATCAGGTGCCGGAACCGCACCGGTGGTTTG
GTTTGTGCGCTGTCGCCAGTAGACGAATCCCCGTTCCTTGTTGCCTCGCC
CATTGCCATGAATTTAGACACGCTGTCTGCTGCAGCCCC

protein sequence of jgi.p|Trimin1|351792

>Trimin1|351792|estExt_Genemark1.C_Ctg_1000026 ID=Trimin1|351792|estExt_Genemark1.C_Ctg_1000026|Name=jgi.p|Trimin1|351792|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=360bp
MQEGAVPAHTQQQMPAAQEAGGMVGGVVPRQDHLQAAPMVTTAPAAAAPL
GAGAWEVFARENREKVRADHPELSVAQQTQVLAQIWQQLDRPTVQMYMEA
ARQESLRMQQQQQQQAVGNGAVGGGGGGGGGGGGMGVPQEQMQPVPQQQQ
LQQQQQQQQQSLPMETDRRGASAWILFVNDYRDRVRSENPDLSCSQQSKV
LSQIWQQLDRPTVEGYIERARAESKRYHNLADSNGGAAAQGGGGGPSGRG
ARGRDDDHGGFGGGSAQRRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEA
TALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCK
ADFEKPMGT*

mRNA from alignment at Contig_100:199423..202979+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10018 ID=mRNA_10018|Name=jgi.p|Trimin1|351792|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3557bp|location=Sequence derived from alignment at Contig_100:199423..202979+ (Tribonema minus UTEX_B_3156 )
GCAGAAGCCGCGTTCGAAGCAGCCGTGTGATCAAACCTGGGACGCGCTAT
GCAGGTAGGCTGCGTCGTGATGCGATGTGCTGCTGATTTTCTCCCAGATA
CTGCATCCAGAGAGTTGATGTTAGCACCTGTGTTCAACTAAAGCCAAGCG
ACGGCACCGTGTGACAGGAAGGAGCTGTGCCGGCGCACACGCAGCAGCAA
ATGCCAGCTGCGCAGGAAGCCGGAGGAATGGTCGGGGGAGTTGTGCCGCG
ACAGGATCATCTGCAGGCAAGTTTTGAACACTAGCATGCCAGAAAGGGGT
TGCCGGAGTTCATGCCAATAAGAAGTGTCAGTCGTATATGTGTTGGGCTC
ATATTTGCGATGATTGCTTCGTCACCTGGCGGACATGTGCCTCGTGCTTT
CGAATTTGCAAACCACGTGTTGGTGTAACGATCTTGCACTTTTCGGTTCA
GCGTGTGCACTTCCTGGCGTGAGAAGTACTGCTGAAATGAATGGTGTATT
ACCTGTAGCACTGCAGCAGGATACTGTGGATCTGATGACTCAGGTCACGC
ATGCCAGCTCCTAACGTGACTGTCTGTTCAACATCGCAGCATCAGCACTG
TTAAACACCAAGTGCCATGCCCCCCCCCTCCATTTGCAGGCTGCCCCGAT
GGTGACTACTGCGCCAGCCGCTGCCGCGCCACTAGGCGCAGGTGCATGGG
AGGTGTTTGCCCGCGAGAACAGGGAGAAGGTCAGAGCGGACCATCCCGAG
CTGAGCGTTGCGCAGCAGACGCAGGTCCTGGCTCAGATCTGGCAGCAGCT
AGACAGACCAACAGTGCAGATGTACATGGAGGCTGCACGGCAGGAGAGCC
TGCGCATGCAGCAGCAGCAGCAGCAGCAGGCGGTTGGTAATGGCGCAGTG
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCATGGGGGTGCCGCA
GGAGCAGATGGTGAGACTTGAAGTTAGTTCTGGAATCTTTGGCGACGGTC
TCTCTGCACACTGTGTTGAGCACTGCTTGAAAAGCGAGGAGGATGCAAGG
CACGGGAGTTCACAAGTACACCATGGATTGTGATGTTGTCCCTGGGCTCA
GCACTTGAAGTGTGTGGGGTCCATGACGCCCTGTAGGAGCAGTGTCCATG
ACGCCCTGTAGGAGCAGTTCCGTCATGCTCACGGCATTGCGCATAAGTGG
TCTGCTATCAAACAGCGACAACCTCAGGTGGTGTCTCAGACAGTCGCTAC
TCATCGAGGCCTTTGCGTAAACACCCACACGGCCTACGCCTTGTTTCGGC
CACAGCTTGCTTGAGTAGGTAGGAACTCGTAGAGCTGGCAGGTTGTAGCG
TCTTCACATGATGCCAGCAACAGGGCAGCAGCAGCAGCAGCAGCAGCAGG
AGTGGCAGTAGCACCAGCAGCAGCAGCAGCGGCGGTCGCAGCAGCCGCAG
CAACGCTCAATCAACACTGTTGGCGAGTGCAGGGCCTCATTATTTCTCCA
GATTGATTGCTTTGGTTGGTTGATACTGCGCAACATGAGTGCAGGATAAG
GGCGAGAGTGAGTCTTTGGACTGTTTGCTGCTTGGTGCAAGTGTCGCGAT
CCAGCAGCTGGCACTCGCATCCACCTTTCTGAACTGCGCGACACTCTGTG
CTGTTTTTGCTTTGCTGTGTGCTCTTTCTCACTCGCCTCCAACTGCAGCA
ACACCACCAGCACCACCTGCAACCGCAGCAGCAACAGCATCAACAGCAGC
AGCAGCAGCAGCACGTTCCACTGCAGCAGCAGCAGCACCTGCCACCGCCG
CAGCAGCCAGTGCCGCAGCAGCAACAGCTGCAGCAGCAGCAGCAGCAGCA
GCAACAGGTGAGACCTCCGGTCGCAGCAGCAGCATCAGCAGCATCAGCAG
CAGCAACAGCAGCGCCGTATCAGCAGCCACAGCCCTCTGGCGGCGATGAT
GATGAAGCTGGCAGTACTGGCGGCGCAAGCGCCCCCAATGGTCCGCCAGA
GAAACGACGCAAGGTATGTGTGTACGCATGTTGGCCCCCTCCTATGCCAT
GCCATTTGCTCACAAACGTAGTTTTCGCTTCCCAGATAGCGACAGTTTTG
ACAATGCCCCTGCGTGTGGCTTGAGCGCTAAGTCACGGTGCGAGTCTGAT
CAAGTCCAACCATGACATTCGCACTACTGGTTGCTACCCTTGCTCTGGCT
GCAGCCAGCTTACAGTTCTTGCAGGGTACGGCTGTTTACAAGTCAAGCAG
CATCACAAATACTTCTGTACGGGCACGCTCAAGCTATATGTTGAACTCAT
GACCTTGTGCATTCATATGCATCTCAATTGTCGAGCCTTGGGCTTGGTAT
CCATTTCACATCAAACATGCCACAAAATTGCCTCTGGACAGCACACGCTT
GCTCTCCTGCATGGTACCCGTTGAGCCCTGTTGGCAATATCACATTCACA
CACTAATCAACTCCTTATATATGTGCAATGTGCGTGCAGTTGTCTTGCTG
CCCGTTTGCCTTGTCGCCCATTTGCGTGCGCTGCTGCCGTCACCGGCTGC
TGCCGCATTTGCTGAGCGCCGCTGCAGCACTAGGTCCTGCCGCCCCTTGC
TGAACGCTGCTGCTGTTGCCGGGCCGTACAATCAACACTGCCGCTGCCTG
AACCCTGCCCCTCCTTGCTGGACGCTGCTGCCCTTGCTGAGTCGTGCTGC
CATCTCACAGAGCACTGCCCCCCCCCCCCCCCCCCCCGCCCCGCAGTCCC
TGCCCATGGAGACGGACAGGCGCGGCGCGTCCGCCTGGATCCTCTTTGTC
AACGACTACAGAGACAGGGTGCGCTCCGAAAACCCCGACCTCAGCTGCTC
GCAGCAGTCCAAGGTCCTCAGCCAGATCTGGCAGCAGCTGGACAGGCCCA
CAGTGGAGGGCTACATAGAGCGCGCGCGCGCAGAGAGCAAGCGCTACCAC
AACCTCGCCGACAGCAACGGCGGCGCCGCCGCGCAGGGCGGGGGAGGGGG
ACCGTCAGGCAGAGGCGCGCGCGGGAGGGACGATGATCATGGCGGTTTTG
GGGGTGGCAGTGCTCAGCGGAGGCCGCCTGTGAGCTTGGAGGCGGTGTGC
CCTATGGGCCGCATACGCAGAATCATCAAGCTGGACCCGGAGGTGGGGAA
CGTTACGAAGGAGGCGACAGCGCTGGTGGAGAAGGCCATGCAGCTGTTCC
TGGAGCAACTCGCGCAGCGCAGCTGGGAGATGTGCACGGAGGACGGGCGG
CGCAACATCAAGACGCAGGACATTGCTATGTGCGTGCACGCGCTCGACGA
GTACCACTGGTGCAAGGCCGACTTCGAGAAGCCCATGGGGACATGACGGC
CTCCCGCCGCTGCCGCTGCTGCGGCGTTGAGCGCTGCTGCCACACGGTGG
CAGTGCTCATCTGCCGGACTTTGCAGCGCCGCCGTGCGATCAGGTGCCGG
AACCGCACCGGTGGTTTGGTTTGTGCGCTGTCGCCAGTAGACGAATCCCC
GTTCCTTGTTGCCTCGCCCATTGCCATGAATTTAGACACGCTGTCTGCTG
CAGCCCC

Coding sequence (CDS) from alignment at Contig_100:199423..202979+

>mRNA_10018 ID=mRNA_10018|Name=jgi.p|Trimin1|351792|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1080bp|location=Sequence derived from alignment at Contig_100:199423..202979+ (Tribonema minus UTEX_B_3156 )
ATGCAGGAAGGAGCTGTGCCGGCGCACACGCAGCAGCAAATGCCAGCTGC
GCAGGAAGCCGGAGGAATGGTCGGGGGAGTTGTGCCGCGACAGGATCATC
TGCAGGCTGCCCCGATGGTGACTACTGCGCCAGCCGCTGCCGCGCCACTA
GGCGCAGGTGCATGGGAGGTGTTTGCCCGCGAGAACAGGGAGAAGGTCAG
AGCGGACCATCCCGAGCTGAGCGTTGCGCAGCAGACGCAGGTCCTGGCTC
AGATCTGGCAGCAGCTAGACAGACCAACAGTGCAGATGTACATGGAGGCT
GCACGGCAGGAGAGCCTGCGCATGCAGCAGCAGCAGCAGCAGCAGGCGGT
TGGTAATGGCGCAGTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCATGGGGGTGCCGCAGGAGCAGATGCAGCCAGTGCCGCAGCAGCAACAG
CTGCAGCAGCAGCAGCAGCAGCAGCAACAGTCCCTGCCCATGGAGACGGA
CAGGCGCGGCGCGTCCGCCTGGATCCTCTTTGTCAACGACTACAGAGACA
GGGTGCGCTCCGAAAACCCCGACCTCAGCTGCTCGCAGCAGTCCAAGGTC
CTCAGCCAGATCTGGCAGCAGCTGGACAGGCCCACAGTGGAGGGCTACAT
AGAGCGCGCGCGCGCAGAGAGCAAGCGCTACCACAACCTCGCCGACAGCA
ACGGCGGCGCCGCCGCGCAGGGCGGGGGAGGGGGACCGTCAGGCAGAGGC
GCGCGCGGGAGGGACGATGATCATGGCGGTTTTGGGGGTGGCAGTGCTCA
GCGGAGGCCGCCTGTGAGCTTGGAGGCGGTGTGCCCTATGGGCCGCATAC
GCAGAATCATCAAGCTGGACCCGGAGGTGGGGAACGTTACGAAGGAGGCG
ACAGCGCTGGTGGAGAAGGCCATGCAGCTGTTCCTGGAGCAACTCGCGCA
GCGCAGCTGGGAGATGTGCACGGAGGACGGGCGGCGCAACATCAAGACGC
AGGACATTGCTATGTGCGTGCACGCGCTCGACGAGTACCACTGGTGCAAG
GCCGACTTCGAGAAGCCCATGGGGACATGA