Trimin1|351756|estExt_Genemark1.C_Ctg_990047 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351756
Unique Name	Trimin1\|351756\|estExt_Genemark1.C_Ctg_990047
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	683

Homology

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BLAST of jgi.p|Trimin1|351756 vs. uniprot
Match: A0A835YGC4_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC4_9STRA)

HSP 1 Score: 887 bits (2293), Expect = 0.000e+0
Identity = 682/682 (100.00%), Postives = 682/682 (100.00%), Query Frame = 0

Query:    1 MDIIALQALPAPHPLQPSSENSAAQGGDTGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDRGLHSGGGGDGGVAPLPLSWGAAGFDAPVSHADASHHQXXXXXXXXXXXXQADVDAMNLDPLDFSSFDSGLYVDGVDATLARIIRSEYLATDSEXXXXXXXXXXXXXXIGGEANDSEEDLDPVPYDEVVVPLTAMARGSARRAERTHNVISARRGSSGSAMDVDDTDSNLNGSYFNDAHGHSAQQXXXXXXXXXXXXXXXXXXXXXXXXXQPLRPPPLQQYQQHGIPQQQLAQPQFAXXXXXXXXXQQHMYXXXXXXAPQHEMXXXXDNXXXXXXXXXXXXXXXXXXXXXXHXXXQQQXXXXXXXXXXXXXXXXPQQVYDISGSTSVSIPCDRPTRSSYTSSGSSCSTSGDTCLQGAGYGEQSYGSGTVTFTVPVHSGAFTNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCGSTGSAAFMSQLQRLNAPSGXXXXXXXAPQDGAVTQLPCWTGGSGAAPLDCCAVMVAATAAEGLPERLPWD 682
            MDIIALQALPAPHPLQPSSENSAAQGGDTGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDRGLHSGGGGDGGVAPLPLSWGAAGFDAPVSHADASHHQXXXXXXXXXXXXQADVDAMNLDPLDFSSFDSGLYVDGVDATLARIIRSEYLATDSEXXXXXXXXXXXXXXIGGEANDSEEDLDPVPYDEVVVPLTAMARGSARRAERTHNVISARRGSSGSAMDVDDTDSNLNGSYFNDAHGHSAQQXXXXXXXXXXXXXXXXXXXXXXXXXQPLRPPPLQQYQQHGIPQQQLAQPQFAXXXXXXXXXQQHMYXXXXXXAPQHEMXXXXDNXXXXXXXXXXXXXXXXXXXXXXHXXXQQQXXXXXXXXXXXXXXXXPQQVYDISGSTSVSIPCDRPTRSSYTSSGSSCSTSGDTCLQGAGYGEQSYGSGTVTFTVPVHSGAFTNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCGSTGSAAFMSQLQRLNAPSGXXXXXXXAPQDGAVTQLPCWTGGSGAAPLDCCAVMVAATAAEGLPERLPWD
Sbjct:    1 MDIIALQALPAPHPLQPSSENSAAQGGDTGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDRGLHSGGGGDGGVAPLPLSWGAAGFDAPVSHADASHHQXXXXXXXXXXXXQADVDAMNLDPLDFSSFDSGLYVDGVDATLARIIRSEYLATDSEXXXXXXXXXXXXXXIGGEANDSEEDLDPVPYDEVVVPLTAMARGSARRAERTHNVISARRGSSGSAMDVDDTDSNLNGSYFNDAHGHSAQQXXXXXXXXXXXXXXXXXXXXXXXXXQPLRPPPLQQYQQHGIPQQQLAQPQFAXXXXXXXXXQQHMYXXXXXXAPQHEMXXXXDNXXXXXXXXXXXXXXXXXXXXXXHXXXQQQXXXXXXXXXXXXXXXXPQQVYDISGSTSVSIPCDRPTRSSYTSSGSSCSTSGDTCLQGAGYGEQSYGSGTVTFTVPVHSGAFTNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCGSTGSAAFMSQLQRLNAPSGXXXXXXXAPQDGAVTQLPCWTGGSGAAPLDCCAVMVAATAAEGLPERLPWD 682

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BLAST of jgi.p|Trimin1|351756 vs. uniprot
Match: A0A835Z6G2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.020e-19
Identity = 63/144 (43.75%), Postives = 79/144 (54.86%), Query Frame = 0

Query:   29 TGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPE------FAAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDR 166
            T  +A+     K+ YKRPRKRA+EVDRK+TC HCFKGYGNASSLNLHV+LKH +       +A PA                +   D     P AI+++   H RRPSGP A VPH  +    +L R+ S G G R    +R R
Sbjct:    8 TSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAE-------------SDTRPADADRRAPAAIALDMG-HSRRPSGPSAAVPHFAAP--GSLQRQPSGGTGFRSLLNKRKR 135

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BLAST of jgi.p|Trimin1|351756 vs. uniprot
Match: A0A835Z944_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z944_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.440e-14
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0

Query:   40 KKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAP 87
            K+ YKRPRKRA+EVDRKYTC HC +GYGNASSL+LHV+LKHP  AAAP
Sbjct:  179 KERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAP 226

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351756 vs. uniprot

BLAST of jgi.p|Trimin1|351756 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YGC4_9STRA	0.000e+0	100.00	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A835Z6G2_9STRA	1.020e-19	43.75	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A835Z944_9STRA	8.440e-14	79.17	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 57..80 e-value: 0.0093 score: 25.2
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 59..80
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 57..80 score: 9.161507
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 315..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 455..501
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 304..501
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 381..442
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..39
None	No IPR available	PANTHER	PTHR24403:SF48	PR DOMAIN ZINC FINGER PROTEIN 10	coord: 54..482
None	No IPR available	PANTHER	PTHR24403	ZINC FINGER PROTEIN	coord: 54..482

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_99	contig	Contig_99:380766..385448 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351756	mRNA_12271	Tribonema minus UTEX_B_3156	mRNA	Contig_99 380766..385562 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351756|estExt_Genemark1.C_Ctg_990047 ID=Trimin1|351756|estExt_Genemark1.C_Ctg_990047|Name=jgi.p|Trimin1|351756|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=683bp
MDIIALQALPAPHPLQPSSENSAAQGGDTGKVASRVPLRKKLYKRPRKRA
YEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPAAAAAAGSSGGAA
DSGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRR
ASAGNGIRGAFARRDRGLHSGGGGDGGVAPLPLSWGAAGFDAPVSHADAS
HHQHHHHHHHHHPHHQADVDAMNLDPLDFSSFDSGLYVDGVDATLARIIR
SEYLATDSESESEGRGGGSSGRGIGGEANDSEEDLDPVPYDEVVVPLTAM
ARGSARRAERTHNVISARRGSSGSAMDVDDTDSNLNGSYFNDAHGHSAQQ
QQQQQQQEQQQQQHPQQLQHLHHHHQPLRPPPLQQYQQHGIPQQQLAQPQ
FAQHHQHHQQPQQHMYHNQQPQAPQHEMQQHQDNSQQQQQQAHHYDHHWE
QQQHQQHQQHQQQHHQQQHQHQQQDHPHQPQQVYDISGSTSVSIPCDRPT
RSSYTSSGSSCSTSGDTCLQGAGYGEQSYGSGTVTFTVPVHSGAFTNGSS
SSGGGLYGSSDAAATICRSSSGGDSYVSDGGVDNAFHASTAAAATAACSS
TPPPPPPLLRCGSTGSAAFMSQLQRLNAPSGGAAAAAAAPQDGAVTQLPC
WTGGSGAAPLDCCAVMVAATAAEGLPERLPWD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type