mRNA_12271 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351756
Unique Name	mRNA_12271
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351756 vs. uniprot
Match: A0A835YGC4_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC4_9STRA)

HSP 1 Score: 887 bits (2292), Expect = 0.000e+0
Identity = 682/682 (100.00%), Postives = 682/682 (100.00%), Query Frame = 1

Query:  115 MDIIALQALPAPHPLQPSSENSAAQGGDTGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDRGLHSGGGGDGGVAPLPLSWGAAGFDAPVSHADASHHQXXXXXXXXXXXXQADVDAMNLDPLDFSSFDSGLYVDGVDATLARIIRSEYLATDSEXXXXXXXXXXXXXXIGGEANDSEEDLDPVPYDEVVVPLTAMARGSARRAERTHNVISARRGSSGSAMDVDDTDSNLNGSYFNDAHGHSAQQXXXXXXXXXXXXXXXXXXXXXXXXXQPLRPPPLQQYQQHGIPQQQLAQPQFAXXXXXXXXXQQHMYXXXXXXAPQHEMXXXXDNXXXXXXXXXXXXXXXXXXXXXXHXXXQQQXXXXXXXXXXXXXXXXPQQVYDISGSTSVSIPCDRPTRSSYTSSGSSCSTSGDTCLQGAGYGEQSYGSGTVTFTVPVHSGAFTNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCGSTGSAAFMSQLQRLNAPSGXXXXXXXAPQDGAVTQLPCWTGGSGAAPLDCCAVMVAATAAEGLPERLPWD 2160
            MDIIALQALPAPHPLQPSSENSAAQGGDTGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDRGLHSGGGGDGGVAPLPLSWGAAGFDAPVSHADASHHQXXXXXXXXXXXXQADVDAMNLDPLDFSSFDSGLYVDGVDATLARIIRSEYLATDSEXXXXXXXXXXXXXXIGGEANDSEEDLDPVPYDEVVVPLTAMARGSARRAERTHNVISARRGSSGSAMDVDDTDSNLNGSYFNDAHGHSAQQXXXXXXXXXXXXXXXXXXXXXXXXXQPLRPPPLQQYQQHGIPQQQLAQPQFAXXXXXXXXXQQHMYXXXXXXAPQHEMXXXXDNXXXXXXXXXXXXXXXXXXXXXXHXXXQQQXXXXXXXXXXXXXXXXPQQVYDISGSTSVSIPCDRPTRSSYTSSGSSCSTSGDTCLQGAGYGEQSYGSGTVTFTVPVHSGAFTNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCGSTGSAAFMSQLQRLNAPSGXXXXXXXAPQDGAVTQLPCWTGGSGAAPLDCCAVMVAATAAEGLPERLPWD
Sbjct:    1 MDIIALQALPAPHPLQPSSENSAAQGGDTGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDRGLHSGGGGDGGVAPLPLSWGAAGFDAPVSHADASHHQXXXXXXXXXXXXQADVDAMNLDPLDFSSFDSGLYVDGVDATLARIIRSEYLATDSEXXXXXXXXXXXXXXIGGEANDSEEDLDPVPYDEVVVPLTAMARGSARRAERTHNVISARRGSSGSAMDVDDTDSNLNGSYFNDAHGHSAQQXXXXXXXXXXXXXXXXXXXXXXXXXQPLRPPPLQQYQQHGIPQQQLAQPQFAXXXXXXXXXQQHMYXXXXXXAPQHEMXXXXDNXXXXXXXXXXXXXXXXXXXXXXHXXXQQQXXXXXXXXXXXXXXXXPQQVYDISGSTSVSIPCDRPTRSSYTSSGSSCSTSGDTCLQGAGYGEQSYGSGTVTFTVPVHSGAFTNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCGSTGSAAFMSQLQRLNAPSGXXXXXXXAPQDGAVTQLPCWTGGSGAAPLDCCAVMVAATAAEGLPERLPWD 682

[Close]

BLAST of jgi.p|Trimin1|351756 vs. uniprot
Match: A0A835Z6G2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.110e-19
Identity = 63/144 (43.75%), Postives = 79/144 (54.86%), Query Frame = 1

Query:  199 TGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPE------FAAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDR 612
            T  +A+     K+ YKRPRKRA+EVDRK+TC HCFKGYGNASSLNLHV+LKH +       +A PA                +   D     P AI+++   H RRPSGP A VPH  +    +L R+ S G G R    +R R
Sbjct:    8 TSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAE-------------SDTRPADADRRAPAAIALDMG-HSRRPSGPSAAVPHFAAP--GSLQRQPSGGTGFRSLLNKRKR 135

[Close]

BLAST of jgi.p|Trimin1|351756 vs. uniprot
Match: A0A835Z944_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z944_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.160e-14
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1

Query:  232 KKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAP 375
            K+ YKRPRKRA+EVDRKYTC HC +GYGNASSL+LHV+LKHP  AAAP
Sbjct:  179 KERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAP 226

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351756 vs. uniprot

BLAST of jgi.p|Trimin1|351756 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YGC4_9STRA	0.000e+0	100.00	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A835Z6G2_9STRA	1.110e-19	43.75	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A835Z944_9STRA	9.160e-14	79.17	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_99	contig	Contig_99:380766..385562 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351756\|estExt_Genemark1.C_Ctg_990047
Description	C2H2 type family protein
COG category	S
Max annot lvl	5878\|Ciliophora
EggNOG OGs	2D6AC@1\|root,2S56M@2759\|Eukaryota,3ZESF@5878\|Ciliophora
Evalue	9.54e-05
Seed ortholog	5911.EAR98444
Hectar predicted targeting category	other localisation
TranscriptId	352078
Track	FilteredModels1
ProteinId	351756

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351756	gene_12271	Tribonema minus UTEX_B_3156	gene	Contig_99 380766..385562 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351756	Trimin1\|351756\|estExt_Genemark1.C_Ctg_990047	Tribonema minus UTEX_B_3156	polypeptide	Contig_99 380766..385448 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12271_5	exon_12271_5	Tribonema minus UTEX_B_3156	exon	Contig_99 380766..381938 -
exon_12271_4	exon_12271_4	Tribonema minus UTEX_B_3156	exon	Contig_99 382688..382979 -
exon_12271_3	exon_12271_3	Tribonema minus UTEX_B_3156	exon	Contig_99 383561..384001 -
exon_12271_2	exon_12271_2	Tribonema minus UTEX_B_3156	exon	Contig_99 384952..385028 -
exon_12271_1	exon_12271_1	Tribonema minus UTEX_B_3156	exon	Contig_99 385383..385562 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12271	CDS_12271	Tribonema minus UTEX_B_3156	CDS	Contig_99 385383..385448 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_12271	UTR5_12271	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_99 385449..385562 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_99:380766..385562-
coding sequence from alignment at Contig_99:380766..385562-

spliced messenger RNA

>mRNA_12271 ID=mRNA_12271|Name=jgi.p|Trimin1|351756|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2163bp|location=Sequence derived from alignment at Contig_99:380766..385562- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCCGCTGCCTGATTTAAGGCGTGAAATCGGGTGCACGCGTCACTACGCG
AGGAGGGAAGGAGGGAGGGCAGTGTGTGTGTGTGTGTGTTAGCAGCGGGC
GGGAGGTGACAACCATGGATATCATTGCATTGCAGGCATTGCCAGCGCCG
CATCCGCTACAGCCAAGCTCTGAGAACTCGGCGGCGCAGGGTGGAGACAC
GGGCAAGGTGGCGTCGCGCGTGCCGCTGAGGAAGAAGCTATACAAGAGAC
CAAGAAAGCGCGCCTACGAGGTCGACCGCAAGTACACGTGTCCGCACTGC
TTCAAGGGCTACGGCAACGCGTCGTCGCTCAACCTCCACGTCAAGCTCAA
GCACCCGGAGTTCGCCGCCGCCCCCGCCGCCGCCGCCGCCGCCGGCAGCA
GCGGCGGCGCCGCCGACAGCGGCAGCAGCAGCGCTCAGGACTGCGGCCAT
TTGGTGCCGCTGGCTATTTCCGTCAACTTCAACCAACACGTGCGGCGCCC
CTCGGGCCCCGGCGCCGTCGTGCCGCACGTCGACTCGCTGCGCCGCGCGG
CGCTCACGCGGCGCGCGAGCGCGGGGAACGGCATCCGCGGCGCGTTCGCG
CGGCGGGACCGCGGCCTGCACAGCGGCGGCGGCGGCGACGGCGGCGTGGC
GCCGCTGCCGCTGAGCTGGGGCGCCGCTGGCTTCGACGCGCCCGTCAGCC
ACGCCGACGCCAGCCACCACCAACACCATCACCACCACCATCACCACCAC
CCCCATCACCAGGCGGATGTGGATGCCATGAACCTCGACCCCCTCGACTT
CTCGTCCTTCGACAGCGGCCTCTACGTCGACGGCGTGGACGCGACGCTCG
CGCGCATCATACGCTCCGAGTACCTGGCGACCGACTCTGAGTCGGAGTCG
GAGGGCCGCGGCGGCGGCAGCAGCGGCCGCGGCATCGGCGGCGAGGCGAA
CGATTCGGAGGAGGACCTCGACCCCGTGCCCTATGACGAGGTGGTGGTGC
CGCTGACGGCAATGGCGCGCGGGTCGGCGCGCCGCGCGGAGCGCACGCAC
AACGTCATCAGCGCTAGGCGAGGCAGCAGCGGCTCAGCGATGGACGTCGA
CGACACGGACAGCAACCTCAACGGCAGCTACTTCAACGACGCGCACGGGC
ACAGTGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAG
CAGCACCCGCAGCAGCTTCAGCACCTGCACCACCACCACCAGCCGCTGCG
GCCACCGCCGCTGCAGCAGTACCAGCAGCACGGTATCCCGCAGCAGCAGC
TCGCTCAACCACAATTTGCTCAGCACCACCAGCATCACCAGCAGCCCCAG
CAGCACATGTATCACAATCAGCAGCCGCAGGCGCCGCAACACGAGATGCA
GCAGCACCAGGACAACTCCCAGCAGCAACAGCAGCAGGCCCATCATTATG
ATCACCACTGGGAACAGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAG
CAGCACCACCAGCAGCAGCACCAGCACCAGCAGCAGGACCACCCGCACCA
GCCGCAGCAAGTTTACGACATCAGCGGCAGCACAAGCGTCAGCATCCCCT
GCGATCGACCTACGCGAAGCAGTTACACGAGCAGCGGCAGCAGCTGTAGC
ACCAGCGGTGATACCTGTTTGCAGGGCGCCGGCTACGGCGAGCAGTCCTA
CGGCAGTGGCACTGTCACCTTCACCGTGCCTGTGCACTCCGGCGCGTTCA
CCAACGGCAGCAGCAGCAGCGGCGGCGGCCTCTACGGCAGCAGCGACGCC
GCCGCCACCATCTGCCGCAGCAGCAGCGGCGGCGACAGCTATGTCAGCGA
CGGCGGCGTCGACAACGCCTTCCACGCTAGCACAGCGGCAGCAGCGACCG
CCGCGTGCAGCAGCACGCCGCCGCCGCCGCCGCCGCTGCTGCGCTGCGGC
TCCACGGGCAGCGCCGCCTTCATGTCGCAGCTGCAGCGTCTCAACGCACC
GAGTGGCGGCGCGGCGGCAGCGGCGGCGGCGCCGCAGGACGGCGCCGTTA
CGCAGCTGCCGTGTTGGACCGGCGGCAGCGGCGCAGCGCCGCTCGACTGC
TGCGCCGTCATGGTTGCGGCGACGGCGGCGGAGGGCCTGCCGGAGCGGCT
GCCGTGGGACTGA

protein sequence of jgi.p|Trimin1|351756

>Trimin1|351756|estExt_Genemark1.C_Ctg_990047 ID=Trimin1|351756|estExt_Genemark1.C_Ctg_990047|Name=jgi.p|Trimin1|351756|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=683bp
MDIIALQALPAPHPLQPSSENSAAQGGDTGKVASRVPLRKKLYKRPRKRA
YEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPAAAAAAGSSGGAA
DSGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRR
ASAGNGIRGAFARRDRGLHSGGGGDGGVAPLPLSWGAAGFDAPVSHADAS
HHQHHHHHHHHHPHHQADVDAMNLDPLDFSSFDSGLYVDGVDATLARIIR
SEYLATDSESESEGRGGGSSGRGIGGEANDSEEDLDPVPYDEVVVPLTAM
ARGSARRAERTHNVISARRGSSGSAMDVDDTDSNLNGSYFNDAHGHSAQQ
QQQQQQQEQQQQQHPQQLQHLHHHHQPLRPPPLQQYQQHGIPQQQLAQPQ
FAQHHQHHQQPQQHMYHNQQPQAPQHEMQQHQDNSQQQQQQAHHYDHHWE
QQQHQQHQQHQQQHHQQQHQHQQQDHPHQPQQVYDISGSTSVSIPCDRPT
RSSYTSSGSSCSTSGDTCLQGAGYGEQSYGSGTVTFTVPVHSGAFTNGSS
SSGGGLYGSSDAAATICRSSSGGDSYVSDGGVDNAFHASTAAAATAACSS
TPPPPPPLLRCGSTGSAAFMSQLQRLNAPSGGAAAAAAAPQDGAVTQLPC
WTGGSGAAPLDCCAVMVAATAAEGLPERLPWD*

mRNA from alignment at Contig_99:380766..385562-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12271 ID=mRNA_12271|Name=jgi.p|Trimin1|351756|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4797bp|location=Sequence derived from alignment at Contig_99:380766..385562- (Tribonema minus UTEX_B_3156 )
CGCCGCTGCCTGATTTAAGGCGTGAAATCGGGTGCACGCGTCACTACGCG
AGGAGGGAAGGAGGGAGGGCAGTGTGTGTGTGTGTGTGTTAGCAGCGGGC
GGGAGGTGACAACCATGGATATCATTGCATTGCAGGCATTGCCAGCGCCG
CATCCGCTACAGCCAAGCTCTGAGAACTCGGTGAGTGCTTCCGAGAGTAG
AGTTGCCCACTCCATCGAAATAGGAACACAGCGCGGCAGGCACAAACACA
GCAAAAGCAAGTCCCTCGACAACATGCGCTGAAATTCGCCTTACTACTAG
CGTTCAAGCCAGCCTACGCAGCGTGCGCAGCGCGGGCAACGTCCGCGGTG
ACCTTATTATGCAGCTCCTAATGCGTACCAGCCCGTAGCTACGCTTTGTG
TCATGCGAGCGGTGTGAGCTTGCAGTTGTGACGAGCGCAGAATCTACGAG
TCCCTACGCTTCAGCAGATCTTTGAGAGCGCCAGGCGGGATCTTCACGTT
CCACTACGTGTTTTGGCGGGTATTCGTTGTGCAGGCGGCGCAGGGTGGAG
ACACGGGCAAGGTGGCGTCGCGCGTGCCGCTGAGGAAGAAGCTATACAAG
AGACCAAGAAAGTGAGTGCGCCGCCAGTCACATCCATCTATGACATGAAT
CAATGTGTGCAGTACAGTAGCACACGTGCAAACGGATGGTGCCATGGGTC
GCCATCAGCGAGATTAACAGCCCAGCAGGATCCGAGCTTTGCCATCGATC
TGCCTGTTAGCATCAGCATGCAGCCAAGGACTCAGCTGATCCATCTGGCC
AGCTGCTAGAGCTGGTCAAGGCTACTGCTAATTTTGCCTTGCACATTCGC
CTGATTGAGCTTGAGTTCAAACTTTGAACAGACACAGACTTTCATTGTTG
TCAACAGAGCACATGCTTAGAAGTACCTCTTGAAGTACACGATGATACCA
AAAGTGCAAAGACATGGCACCTGTGCACAGTTGCCACAGCATGTCTGATC
AAATGTTACCATACGCACGGTCCCCGCTGCCGGCATGGGACTGAGCTGCA
GCTCAGACTCCCGTCGAGCGAGCACACGTGGCAGCACATGTACGACGCGC
TGACCATATTAGAACAAACCACCAAAAGCACCAATGCCTGTACCACAGGC
ACAGTCCATGACTAGGCCTGCTGATTGGGACGAGCTAACATCCCTTGGGG
TCCTCCTAGCTCGGTCCGTACACAGCGATGCTTTGCTGCATGGACCCCCA
GCTGAAGTGCAGTGCAGCCGCCCGCACGTGCAGCCGTTGCTGCTATGCAT
GCGCGCTCTGCACGGAGCACAACGTGGAAGTGATAGACATGCCGCATGCG
TCATCATTGAGACACAGCGGGATCCTGCCAGAGAAACTGTACGTTGGAGC
CGTGATCTGGGAATTCTCTATGCACGGCCAGACCACAGATGCATCACGCG
GGGATCCGAACCGACCGACTCGAAAACATCAGCAGACGCGCACGTCAAGC
GCCTCACCGCGCAGCGTTCACTCAGACACGCCCCCTCCGCCGCTGCCGCC
ACCATCCGCAGGCGCGCCTACGAGGTCGACCGCAAGTACACGTGTCCGCA
CTGCTTCAAGGGCTACGGCAACGCGTCGTCGCTCAACCTCCACGTCAAGC
TCAAGCACCCGGAGTTCGCCGCCGCCCCCGCCGCCGCCGCCGCCGCCGGC
AGCAGCGGCGGCGCCGCCGACAGCGGCAGCAGCAGCGCTCAGGACTGCGG
CCATTTGGTGCCGCTGGCTATTTCCGTCAACTTCAACCAACACGTGCGGC
GCCCCTCGGGCCCCGGCGCCGTCGTGCCGCACGTCGACTCGCTGCGCCGC
GCGGCGCTCACGCGGCGCGCGAGCGCGGGGAACGGCATCCGCGGCGCGTT
CGCGCGGCGGGACCGCGGCCTGCACAGCGGCGGCGGCGGCGACGGCGGCG
TGGCGCCGCTGCCGCTGAGCTGGGGCGCCGCTGGCTTCGACGCGCCCGTC
AGGTGAGGCCGCTGCTGTTTTTTTTGTTTGTTGCTCGCAGAAAGTGCGCT
GATTTGAAAGAGATTTCCGTTGTGTCGAGGCCATCATCGCGGGCGCGCGT
GCGTGTGCGCATTGGCTGCGCTTTGCTGCCTCAGGGCTTTCGTTTTGCTT
TTGCAAGTTCCCCTTCATGCGCGAGCTCCCCGCACGGCCGTCGCCGTTCG
GCCGTCTTGATCCCGCGAAGGCGTCCAGGGCCGCCGGCGATGCAATGCTG
CGTTGGATCTCTGCATCAGCGCACGTACAGCATGGCTCAGCAGGCTCACT
GCCCCCACGCCGGCTGCGGCCGCCCCCTCATGACCCTCGCACGCCCCCCT
TCTACGCACTGCAATGCGGTTTCCATGCGAGGCCACGCGGGCCATGTCTA
GCCCCCCCCCCCCCCCCCCCCCATGGCTGCCCCGCACATCATGCTTCCTC
GCAGAGACACGGTAAAAAAAACCATCCGTTGCTCATGAAAAGTGCGCCAT
TCACAGTTGCGTGCAATCGTCGCTGAGCCCTGCTGCCGCACGTCCCCCCC
CCTCCTCCCCCCCTTGCTTCCACGCGCGCGCAGCCACGCCGACGCCAGCC
ACCACCAACACCATCACCACCACCATCACCACCACCCCCATCACCAGGCG
GATGTGGATGCCATGAACCTCGACCCCCTCGACTTCTCGTCCTTCGACAG
CGGCCTCTACGTCGACGGCGTGGACGCGACGCTCGCGCGCATCATACGCT
CCGAGTACCTGGCGACCGACTCTGAGTCGGAGTCGGAGGGCCGCGGCGGC
GGCAGCAGCGGCCGCGGCATCGGCGGCGAGGCGAACGATTCGGAGGAGGA
CCTCGACCCCGTGCCCTATGACGAGGTGAGCACAGTGGTAAGAATAGAAT
CAAGAAGAGAGTTGATGATTCATGAATGAATGACTGCAGTTTGCTGTCGA
CGGTGAACCTAACGATTCGGATGAGGGCTTTGACCCAGTGCCCTATGACG
AGATGAGCGCGGTGGGAGAAAACTATCAAGCAGTTGATCAAAGTTTTCAG
AAGTTTATTGAAGTTTCATGAATGAAACGTGAAAGACTTTGTTTGCTGAT
GTGATGTGCTTGAAGCGCTTGAAGTGTGCCCTGCCGTAGGTTGAAGTTTA
AGCGCGCAACACACATTTCTCGTACTGCGCCTGCTCTCGGATCCCAGGCC
GTGACAAAGAGCACTCTGTATCCATAGCGATAGCAGGACGCCAGTATACT
TGAATGTGAACACTTGTATGATACGTGCCGTCAGGAGTTCAAAATACTTT
AGGAGTGTCCAAAACGCGCTAGTCAAGACCTACTGGCCGCAGCCATCTCA
TCGCAACTTGAGCAGCGTTGAGTGCACTGGCAAAGTTGAACGTGTTTCTT
AGCCGTTGCCCAAGCGCGGCACTGTTGTTGAGTGCAGGTGCTGCTCAGTT
TACAACTGTCATGCTATGACTGTCGCTGTCGTCCTTAGGCGGTGGTGCCA
CCCACGGCTCGGCACCTTTAACGATGCGGTGTTCATGCTCGTACACCGGC
AGCCGTCAAGCGCGGAAGGTGTCATTTTCCTCTCTGTAGCTGTCGCTGTG
TAACCGCCGTACTCTCGTGCGCAGGTGGTGGTGCCGCTGACGGCAATGGC
GCGCGGGTCGGCGCGCCGCGCGGAGCGCACGCACAACGTCATCAGCGCTA
GGCGAGGCAGCAGCGGCTCAGCGATGGACGTCGACGACACGGACAGCAAC
CTCAACGGCAGCTACTTCAACGACGCGCACGGGCACAGTGCGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCACCCGCAGCAGC
TTCAGCACCTGCACCACCACCACCAGCCGCTGCGGCCACCGCCGCTGCAG
CAGTACCAGCAGCACGGTATCCCGCAGCAGCAGCTCGCTCAACCACAATT
TGCTCAGCACCACCAGCATCACCAGCAGCCCCAGCAGCACATGTATCACA
ATCAGCAGCCGCAGGCGCCGCAACACGAGATGCAGCAGCACCAGGACAAC
TCCCAGCAGCAACAGCAGCAGGCCCATCATTATGATCACCACTGGGAACA
GCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCACCACCAGCAGC
AGCACCAGCACCAGCAGCAGGACCACCCGCACCAGCCGCAGCAAGTTTAC
GACATCAGCGGCAGCACAAGCGTCAGCATCCCCTGCGATCGACCTACGCG
AAGCAGTTACACGAGCAGCGGCAGCAGCTGTAGCACCAGCGGTGATACCT
GTTTGCAGGGCGCCGGCTACGGCGAGCAGTCCTACGGCAGTGGCACTGTC
ACCTTCACCGTGCCTGTGCACTCCGGCGCGTTCACCAACGGCAGCAGCAG
CAGCGGCGGCGGCCTCTACGGCAGCAGCGACGCCGCCGCCACCATCTGCC
GCAGCAGCAGCGGCGGCGACAGCTATGTCAGCGACGGCGGCGTCGACAAC
GCCTTCCACGCTAGCACAGCGGCAGCAGCGACCGCCGCGTGCAGCAGCAC
GCCGCCGCCGCCGCCGCCGCTGCTGCGCTGCGGCTCCACGGGCAGCGCCG
CCTTCATGTCGCAGCTGCAGCGTCTCAACGCACCGAGTGGCGGCGCGGCG
GCAGCGGCGGCGGCGCCGCAGGACGGCGCCGTTACGCAGCTGCCGTGTTG
GACCGGCGGCAGCGGCGCAGCGCCGCTCGACTGCTGCGCCGTCATGGTTG
CGGCGACGGCGGCGGAGGGCCTGCCGGAGCGGCTGCCGTGGGACTGA

Coding sequence (CDS) from alignment at Contig_99:380766..385562-

>mRNA_12271 ID=mRNA_12271|Name=jgi.p|Trimin1|351756|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2049bp|location=Sequence derived from alignment at Contig_99:380766..385562- (Tribonema minus UTEX_B_3156 )
ATGGATATCATTGCATTGCAGGCATTGCCAGCGCCGCATCCGCTACAGCC
AAGCTCTGAGAACTCGGCGGCGCAGGGTGGAGACACGGGCAAGGTGGCGT
CGCGCGTGCCGCTGAGGAAGAAGCTATACAAGAGACCAAGAAAGCGCGCC
TACGAGGTCGACCGCAAGTACACGTGTCCGCACTGCTTCAAGGGCTACGG
CAACGCGTCGTCGCTCAACCTCCACGTCAAGCTCAAGCACCCGGAGTTCG
CCGCCGCCCCCGCCGCCGCCGCCGCCGCCGGCAGCAGCGGCGGCGCCGCC
GACAGCGGCAGCAGCAGCGCTCAGGACTGCGGCCATTTGGTGCCGCTGGC
TATTTCCGTCAACTTCAACCAACACGTGCGGCGCCCCTCGGGCCCCGGCG
CCGTCGTGCCGCACGTCGACTCGCTGCGCCGCGCGGCGCTCACGCGGCGC
GCGAGCGCGGGGAACGGCATCCGCGGCGCGTTCGCGCGGCGGGACCGCGG
CCTGCACAGCGGCGGCGGCGGCGACGGCGGCGTGGCGCCGCTGCCGCTGA
GCTGGGGCGCCGCTGGCTTCGACGCGCCCGTCAGCCACGCCGACGCCAGC
CACCACCAACACCATCACCACCACCATCACCACCACCCCCATCACCAGGC
GGATGTGGATGCCATGAACCTCGACCCCCTCGACTTCTCGTCCTTCGACA
GCGGCCTCTACGTCGACGGCGTGGACGCGACGCTCGCGCGCATCATACGC
TCCGAGTACCTGGCGACCGACTCTGAGTCGGAGTCGGAGGGCCGCGGCGG
CGGCAGCAGCGGCCGCGGCATCGGCGGCGAGGCGAACGATTCGGAGGAGG
ACCTCGACCCCGTGCCCTATGACGAGGTGGTGGTGCCGCTGACGGCAATG
GCGCGCGGGTCGGCGCGCCGCGCGGAGCGCACGCACAACGTCATCAGCGC
TAGGCGAGGCAGCAGCGGCTCAGCGATGGACGTCGACGACACGGACAGCA
ACCTCAACGGCAGCTACTTCAACGACGCGCACGGGCACAGTGCGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCACCCGCAGCA
GCTTCAGCACCTGCACCACCACCACCAGCCGCTGCGGCCACCGCCGCTGC
AGCAGTACCAGCAGCACGGTATCCCGCAGCAGCAGCTCGCTCAACCACAA
TTTGCTCAGCACCACCAGCATCACCAGCAGCCCCAGCAGCACATGTATCA
CAATCAGCAGCCGCAGGCGCCGCAACACGAGATGCAGCAGCACCAGGACA
ACTCCCAGCAGCAACAGCAGCAGGCCCATCATTATGATCACCACTGGGAA
CAGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCACCACCAGCA
GCAGCACCAGCACCAGCAGCAGGACCACCCGCACCAGCCGCAGCAAGTTT
ACGACATCAGCGGCAGCACAAGCGTCAGCATCCCCTGCGATCGACCTACG
CGAAGCAGTTACACGAGCAGCGGCAGCAGCTGTAGCACCAGCGGTGATAC
CTGTTTGCAGGGCGCCGGCTACGGCGAGCAGTCCTACGGCAGTGGCACTG
TCACCTTCACCGTGCCTGTGCACTCCGGCGCGTTCACCAACGGCAGCAGC
AGCAGCGGCGGCGGCCTCTACGGCAGCAGCGACGCCGCCGCCACCATCTG
CCGCAGCAGCAGCGGCGGCGACAGCTATGTCAGCGACGGCGGCGTCGACA
ACGCCTTCCACGCTAGCACAGCGGCAGCAGCGACCGCCGCGTGCAGCAGC
ACGCCGCCGCCGCCGCCGCCGCTGCTGCGCTGCGGCTCCACGGGCAGCGC
CGCCTTCATGTCGCAGCTGCAGCGTCTCAACGCACCGAGTGGCGGCGCGG
CGGCAGCGGCGGCGGCGCCGCAGGACGGCGCCGTTACGCAGCTGCCGTGT
TGGACCGGCGGCAGCGGCGCAGCGCCGCTCGACTGCTGCGCCGTCATGGT
TGCGGCGACGGCGGCGGAGGGCCTGCCGGAGCGGCTGCCGTGGGACTGA