Trimin1|351724|estExt_Genemark1.C_Ctg_980052 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351724
Unique Name	Trimin1\|351724\|estExt_Genemark1.C_Ctg_980052
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	301

Homology

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BLAST of jgi.p|Trimin1|351724 vs. uniprot
Match: A0A835YGB0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB0_9STRA)

HSP 1 Score: 266 bits (680), Expect = 5.190e-85
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0

Query:    1 MMLAGLPTGITVIMVAKRAAFLLLLLPHSLMAAPLDALQLQADSGGWPPPPCRHGSRRLYSTRGRESDXXXXXXXXXXARGAAEPAASAVMFCCNQHDLVAPDAYIENHPACTPHLAPALAGPAARRLQAEAIVARTTVTRQPTARPTS 149
            MMLAGLPTGITVIMVAKRAAFLLLLLPHSLMAAPLDALQLQADSGGWPPPPCRHGSRRLYSTRGRESDXXXXXXXXXXARGAAEPAASAVMFCCNQHDLVAPDAYIENHPACTPHLAPALAGPAARRLQAEAIVARTTVTRQPTARPTS
Sbjct:    1 MMLAGLPTGITVIMVAKRAAFLLLLLPHSLMAAPLDALQLQADSGGWPPPPCRHGSRRLYSTRGRESDXXXXXXXXXXARGAAEPAASAVMFCCNQHDLVAPDAYIENHPACTPHLAPALAGPAARRLQAEAIVARTTVTRQPTARPTS 149

[Close]

BLAST of jgi.p|Trimin1|351724 vs. uniprot
Match: A0A835YR52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR52_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.190e-34
Identity = 78/112 (69.64%), Postives = 82/112 (73.21%), Query Frame = 0

Query:   26 LPHSLMAAPLDALQLQADSGGWPPPPCRHGSRRLY---STRGRESDXXXXXXXXXX-ARGAAEPA-ASAVMFCCNQHDLVAPDAYIENHPACTPHLAPALAGPAARRLQAEA 132
            LPH LMAAP DALQ QADSG WPPPPCR   R L    STR  +S+           ARG AEP  A+AV FCCNQHDLVAPDAYIE+HPACTPHLAPALAGPAARRLQA A
Sbjct:   88 LPHGLMAAPSDALQRQADSGNWPPPPCRRSGRALNDSDSTRAHDSESKTGSATGNNGARGVAEPVPAAAVTFCCNQHDLVAPDAYIEDHPACTPHLAPALAGPAARRLQAAA 199

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351724 vs. uniprot

BLAST of jgi.p|Trimin1|351724 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YGB0_9STRA	5.190e-85	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YR52_9STRA	4.190e-34	69.64	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..300
None	No IPR available	PANTHER	PTHR36489	PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED	coord: 140..285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_98	contig	Contig_98:456564..460830 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351724	mRNA_14930	Tribonema minus UTEX_B_3156	mRNA	Contig_98 456564..460847 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351724|estExt_Genemark1.C_Ctg_980052 ID=Trimin1|351724|estExt_Genemark1.C_Ctg_980052|Name=jgi.p|Trimin1|351724|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=301bp
MMLAGLPTGITVIMVAKRAAFLLLLLPHSLMAAPLDALQLQADSGGWPPP
PCRHGSRRLYSTRGRESDSESETGSGSGARGAAEPAASAVMFCCNQHDLV
APDAYIENHPACTPHLAPALAGPAARRLQAEAIVARTTVTRQPTARPTSK
PTSKPTRTPTRQPTRTPTATPTRTPTGQPTRTPTGQPTPLPTRTPTTAPT
RTPTAAPTRTPTRQPTRTPTATPTRTPTGTPTGQPTRTPTATPTRTPTAP
PTRTPTATPTRTPTATPTTRSPTGQPTRAPTRQPTRVPTALPTPQGRCYS
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