Trimin1|351227|estExt_Genemark1.C_Ctg_840007 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351227
Unique Name	Trimin1\|351227\|estExt_Genemark1.C_Ctg_840007
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	191

Homology

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BLAST of jgi.p|Trimin1|351227 vs. uniprot
Match: A0A835YIB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIB7_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.660e-90
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query:    1 MADIGGGWKEFFTPEKKTDRGAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPAGLGDSGGGGGGVQSRGPPPVPATVXXXXXXXXXXXXRCRRAAFVRALHARGSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS 190
            MADIGGGWKEFFTPEKKTDRGAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPAGLGDSGGGGGGVQSRGPPPVPATVXXXXXXXXXXXXRCRRAAFVRALHARGSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS
Sbjct:    1 MADIGGGWKEFFTPEKKTDRGAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPAGLGDSGGGGGGVQSRGPPPVPATVXXXXXXXXXXXXRCRRAAFVRALHARGSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS 190

[Close]

BLAST of jgi.p|Trimin1|351227 vs. uniprot
Match: A0A835YIZ5_9STRA (WH2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIZ5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 5.110e-36
Identity = 96/135 (71.11%), Postives = 98/135 (72.59%), Query Frame = 0

Query:   58 FMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPAGLGDSGGGGGGVQSRGPPPVPATVXXXXXXXXXXXXRCR--RAAFVRALHARGSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS 190
            FMSELAGAMNRRT         PP        IPAFTVKPRPAGLGDSGGGG GVQSRGPPPVPATVXXXXXXXXXXXX     R +F     A  +  G    GNGADAGLTTDQRLAAIERKLDRILAHLGLS
Sbjct:  112 FMSELAGAMNRRTNSGRASSTGPPPVPASAPPIPAFTVKPRPAGLGDSGGGGXGVQSRGPPPVPATVXXXXXXXXXXXXXXXXGRPSFAPYTPAAAAAAGSS--GNGADAGLTTDQRLAAIERKLDRILAHLGLS 244

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351227 vs. uniprot

BLAST of jgi.p|Trimin1|351227 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YIB7_9STRA	1.660e-90	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YIZ5_9STRA	5.110e-36	71.11	WH2 domain-containing protein n=2 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..168

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_84	contig	Contig_84:21980..22922 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351227	mRNA_12085	Tribonema minus UTEX_B_3156	mRNA	Contig_84 21980..22989 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351227|estExt_Genemark1.C_Ctg_840007 ID=Trimin1|351227|estExt_Genemark1.C_Ctg_840007|Name=jgi.p|Trimin1|351227|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp
MADIGGGWKEFFTPEKKTDRGAGPAAAGGGGGASNHAATRRSGGGGGGGG
AVAAGGGFMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPA
GLGDSGGGGGGVQSRGPPPVPATVPPPVPAQGPPPVRCRRAAFVRALHAR
GSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS*