mRNA_12085 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351227
Unique NamemRNA_12085
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351227 vs. uniprot
Match: A0A835YIB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIB7_9STRA)

HSP 1 Score: 271 bits (692), Expect = 7.860e-90
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 
Query:    1 MADIGGGWKEFFTPEKKTDRGAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPAGLGDSGGGGGGVQSRGPPPVPATVXXXXXXXXXXXXRCRRAAFVRALHARGSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS 570
            MADIGGGWKEFFTPEKKTDRGAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPAGLGDSGGGGGGVQSRGPPPVPATVXXXXXXXXXXXXRCRRAAFVRALHARGSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS
Sbjct:    1 MADIGGGWKEFFTPEKKTDRGAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPAGLGDSGGGGGGVQSRGPPPVPATVXXXXXXXXXXXXRCRRAAFVRALHARGSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS 190
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BLAST of jgi.p|Trimin1|351227 vs. uniprot
Match: A0A835YIZ5_9STRA (WH2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIZ5_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.100e-35
Identity = 96/135 (71.11%), Postives = 98/135 (72.59%), Query Frame = 1 
Query:  172 FMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPAGLGDSGGGGGGVQSRGPPPVPATVXXXXXXXXXXXXRCR--RAAFVRALHARGSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS 570
            FMSELAGAMNRRT         PP        IPAFTVKPRPAGLGDSGGGG GVQSRGPPPVPATVXXXXXXXXXXXX     R +F     A  +  G    GNGADAGLTTDQRLAAIERKLDRILAHLGLS
Sbjct:  112 FMSELAGAMNRRTNSGRASSTGPPPVPASAPPIPAFTVKPRPAGLGDSGGGGXGVQSRGPPPVPATVXXXXXXXXXXXXXXXXGRPSFAPYTPAAAAAAGSS--GNGADAGLTTDQRLAAIERKLDRILAHLGLS 244
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BLAST of jgi.p|Trimin1|351227 vs. uniprot
Match: A0A835YK32_9STRA (DUF2439 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK32_9STRA)

HSP 1 Score: 961 bits (2485), Expect = 0.000e+0
Identity = 659/659 (100.00%), Postives = 659/659 (100.00%), Query Frame = 1 
Query:    1 MQAPNGERQVLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSNGDSQQSSEGGGAAKKPKLKGWKAPTKVTVPARPSDDDVYERLRQQXXXXXXXXXXXXXXGYSGGMQQRAGAQAAVGNGRCAGAISNGFGRLSSLWDDEGADRTPDDYWQXXXXXXXXXXXXXXXXXXWXXXXXPWQPHLAPDQRRRVSEADVHRSGDGFVEAYHMEQXXXXXXXQGGQAMRPCPGAPADACYTPRDGNVSTSGQLWPHDALSPQAAARAGGYGSRQYADAPPQQPPPLQRGLQPEGVARGAMSQQQQYGAYAAYSQQDEDSGGGFTLDDGSIFDLLESQGAGAAQPAVLSGSSGSGGAERVYGDGGGAAAGRAGWLGQHVHTPPGGRADSGSEGDASASVGWSGRSSVASALLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPRSATELLSLFGVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGFGDCVPPPRAXXXQPAALHRXXXXXXXXXXXXXQGRWTCACGVQCSAALARCPVCSKLPPGASGGSGDAERPPQMSQCSAAGSSLQLDLGSSDDETS 1977
            MQAPNGERQVLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSNGDSQQSSEGGGAAKKPKLKGWKAPTKVTVPARPSDDDVYERLRQQXXXXXXXXXXXXXXGYSGGMQQRAGAQAAVGNGRCAGAISNGFGRLSSLWDDEGADRTPDDYWQXXXXXXXXXXXXXXXXXXWXXXXXPWQPHLAPDQRRRVSEADVHRSGDGFVEAYHMEQXXXXXXXQGGQAMRPCPGAPADACYTPRDGNVSTSGQLWPHDALSPQAAARAGGYGSRQYADAPPQQPPPLQRGLQPEGVARGAMSQQQQYGAYAAYSQQDEDSGGGFTLDDGSIFDLLESQGAGAAQPAVLSGSSGSGGAERVYGDGGGAAAGRAGWLGQHVHTPPGGRADSGSEGDASASVGWSGRSSVASALLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPRSATELLSLFGVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGFGDCVPPPRAXXXQPAALHRXXXXXXXXXXXXXQGRWTCACGVQCSAALARCPVCSKLPPGASGGSGDAERPPQMSQCSAAGSSLQLDLGSSDDETS
Sbjct:    1 MQAPNGERQVLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSNGDSQQSSEGGGAAKKPKLKGWKAPTKVTVPARPSDDDVYERLRQQXXXXXXXXXXXXXXGYSGGMQQRAGAQAAVGNGRCAGAISNGFGRLSSLWDDEGADRTPDDYWQXXXXXXXXXXXXXXXXXXWXXXXXPWQPHLAPDQRRRVSEADVHRSGDGFVEAYHMEQXXXXXXXQGGQAMRPCPGAPADACYTPRDGNVSTSGQLWPHDALSPQAAARAGGYGSRQYADAPPQQPPPLQRGLQPEGVARGAMSQQQQYGAYAAYSQQDEDSGGGFTLDDGSIFDLLESQGAGAAQPAVLSGSSGSGGAERVYGDGGGAAAGRAGWLGQHVHTPPGGRADSGSEGDASASVGWSGRSSVASALLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPRSATELLSLFGVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGFGDCVPPPRAXXXQPAALHRXXXXXXXXXXXXXQGRWTCACGVQCSAALARCPVCSKLPPGASGGSGDAERPPQMSQCSAAGSSLQLDLGSSDDETS 659
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BLAST of jgi.p|Trimin1|351227 vs. uniprot
Match: A0A6H5JZC9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 5.910e-22
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:   34 RCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGV 267
            RC++T+Q TKKRKTW DGAV+CC KR  V+LY+WS+ LGVTEK LGE +L   ++ AF+TQ EPELEME Y+V+L+GV
Sbjct:  144 RCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGV 221
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BLAST of jgi.p|Trimin1|351227 vs. uniprot
Match: D8LRG4_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.130e-20
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   28 VLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEME 240
            VLRC++T+Q TKKRKTW DGAV+CC KR  V+LY+WS+ LGVTEK LGE +L   ++ AF+TQ EPELEME
Sbjct:   86 VLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEME 156
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351227 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YIB7_9STRA7.860e-90100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIZ5_9STRA2.100e-3571.11WH2 domain-containing protein n=2 Tax=Tribonema mi... [more]
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BLAST of jgi.p|Trimin1|351227 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YK32_9STRA0.000e+0100.00DUF2439 domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5JZC9_9PHAE5.910e-2264.10RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LRG4_ECTSI4.130e-2066.20RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:21980..22989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351227|estExt_Genemark1.C_Ctg_840007
Hectar predicted targeting categoryother localisation
TranscriptId351549
TrackFilteredModels1
ProteinId351227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351227gene_12085Tribonema minus UTEX_B_3156 geneContig_84 21980..22989 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12085_1exon_12085_1Tribonema minus UTEX_B_3156 exonContig_84 21980..22024 +
exon_12085_2exon_12085_2Tribonema minus UTEX_B_3156 exonContig_84 22395..22989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12085CDS_12085Tribonema minus UTEX_B_3156 CDSContig_84 21980..22024 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12085UTR3_12085Tribonema minus UTEX_B_3156 three_prime_UTRContig_84 22923..22989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351227Trimin1|351227|estExt_Genemark1.C_Ctg_840007Tribonema minus UTEX_B_3156 polypeptideContig_84 21980..22922 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12085 ID=mRNA_12085|Name=jgi.p|Trimin1|351227|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=640bp|location=Sequence derived from alignment at Contig_84:21980..22989+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATATTGGAGGAGGCTGGAAGGAGTTCTTTACTCCGGAGAAGAA
GACAGATCGAGGGGCGGGGCCGGCGGCGGCCGGCGGCGGCGGCGGCGCTT
CTAACCACGCCGCCACCAGAAGAAGCGGCGGCGGTGGCGGCGGCGGCGGG
GCGGTGGCGGCAGGGGGCGGCTTCATGAGCGAGCTGGCGGGCGCCATGAA
CAGGCGCACCAAACAGCGGCCGCGCGTCCTCCACAGGCCCCCCGCCAGTG
CCCGCATCGGCGCCGCCATCCCGGCCTTCACCGTGAAGCCGCGGCCAGCA
GGGCTGGGCGACTCAGGAGGGGGAGGGGGTGGTGTGCAGTCGCGGGGCCC
GCCTCCCGTGCCTGCGACCGTGCCGCCGCCTGTGCCTGCGCAGGGGCCGC
CGCCGGTGCGGTGCCGGCGGGCGGCCTTCGTTCGCGCCTTACACGCCCGC
GGCAGCGGCGGCGGCGGGCAGCAGCCCGGCAACGGCGCGGATGCAGGGCT
CACGACGGACCAGCGGCTCGCGGCAATCGAGCGCAAGCTCGACAGGATAC
TGGCGCACCTGGGTCTGAGCTGATGGCTGCGCTTTGCGTGTCAGCGTAAT
GTCAGCGTGTAGGACAGATGGGCGGCTGCTGGGTTTTGAG
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protein sequence of jgi.p|Trimin1|351227

>Trimin1|351227|estExt_Genemark1.C_Ctg_840007 ID=Trimin1|351227|estExt_Genemark1.C_Ctg_840007|Name=jgi.p|Trimin1|351227|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp
MADIGGGWKEFFTPEKKTDRGAGPAAAGGGGGASNHAATRRSGGGGGGGG
AVAAGGGFMSELAGAMNRRTKQRPRVLHRPPASARIGAAIPAFTVKPRPA
GLGDSGGGGGGVQSRGPPPVPATVPPPVPAQGPPPVRCRRAAFVRALHAR
GSGGGGQQPGNGADAGLTTDQRLAAIERKLDRILAHLGLS*
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mRNA from alignment at Contig_84:21980..22989+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12085 ID=mRNA_12085|Name=jgi.p|Trimin1|351227|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1010bp|location=Sequence derived from alignment at Contig_84:21980..22989+ (Tribonema minus UTEX_B_3156 )
ATGGCGGATATTGGAGGAGGCTGGAAGGAGTTCTTTACTCCGGAGGTAAA
GCCTGTGAGTTGTCGCCAAAACTGTGCACCATCACAGAACTGAATCACAA
CATGAAAGTTGCGCACGATCGTCCCATCACCTTGCTCACGTGCACTCCTT
TTGATCTGTTGCTTCAGACTACCACAACGCAAGCAGCGGGCAGACGACAT
GGGAACGGCCAGAAAATCCGCGGCGGCCCCCTCCCCTTCCAGCATGCCCC
CCGCCGGTCCCAGCCAAGGGACCTAGCCCTGTGCCTGCTGCAAAGCCCTC
ATCAGGCACTGCAGCTCCGCCCGGTGACCTCCTCGCCGCGATTAAGGGCG
GCGCTAGACTCAAGAAAGTGGACACAGCAGACAGTCTGTGCCCAAGGCGG
CAGGGGGGGGTGTAGAAGAAGACAGATCGAGGGGCGGGGCCGGCGGCGGC
CGGCGGCGGCGGCGGCGCTTCTAACCACGCCGCCACCAGAAGAAGCGGCG
GCGGTGGCGGCGGCGGCGGGGCGGTGGCGGCAGGGGGCGGCTTCATGAGC
GAGCTGGCGGGCGCCATGAACAGGCGCACCAAACAGCGGCCGCGCGTCCT
CCACAGGCCCCCCGCCAGTGCCCGCATCGGCGCCGCCATCCCGGCCTTCA
CCGTGAAGCCGCGGCCAGCAGGGCTGGGCGACTCAGGAGGGGGAGGGGGT
GGTGTGCAGTCGCGGGGCCCGCCTCCCGTGCCTGCGACCGTGCCGCCGCC
TGTGCCTGCGCAGGGGCCGCCGCCGGTGCGGTGCCGGCGGGCGGCCTTCG
TTCGCGCCTTACACGCCCGCGGCAGCGGCGGCGGCGGGCAGCAGCCCGGC
AACGGCGCGGATGCAGGGCTCACGACGGACCAGCGGCTCGCGGCAATCGA
GCGCAAGCTCGACAGGATACTGGCGCACCTGGGTCTGAGCTGATGGCTGC
GCTTTGCGTGTCAGCGTAATGTCAGCGTGTAGGACAGATGGGCGGCTGCT
GGGTTTTGAG
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Coding sequence (CDS) from alignment at Contig_84:21980..22989+

>mRNA_12085 ID=mRNA_12085|Name=jgi.p|Trimin1|351227|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=573bp|location=Sequence derived from alignment at Contig_84:21980..22989+ (Tribonema minus UTEX_B_3156 )
ATGGCGGATATTGGAGGAGGCTGGAAGGAGTTCTTTACTCCGGAGAAGAA
GACAGATCGAGGGGCGGGGCCGGCGGCGGCCGGCGGCGGCGGCGGCGCTT
CTAACCACGCCGCCACCAGAAGAAGCGGCGGCGGTGGCGGCGGCGGCGGG
GCGGTGGCGGCAGGGGGCGGCTTCATGAGCGAGCTGGCGGGCGCCATGAA
CAGGCGCACCAAACAGCGGCCGCGCGTCCTCCACAGGCCCCCCGCCAGTG
CCCGCATCGGCGCCGCCATCCCGGCCTTCACCGTGAAGCCGCGGCCAGCA
GGGCTGGGCGACTCAGGAGGGGGAGGGGGTGGTGTGCAGTCGCGGGGCCC
GCCTCCCGTGCCTGCGACCGTGCCGCCGCCTGTGCCTGCGCAGGGGCCGC
CGCCGGTGCGGTGCCGGCGGGCGGCCTTCGTTCGCGCCTTACACGCCCGC
GGCAGCGGCGGCGGCGGGCAGCAGCCCGGCAACGGCGCGGATGCAGGGCT
CACGACGGACCAGCGGCTCGCGGCAATCGAGCGCAAGCTCGACAGGATAC
TGGCGCACCTGGGTCTGAGCTGA
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