Trimin1|351195|estExt_Genemark1.C_Ctg_830015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351195
Unique NameTrimin1|351195|estExt_Genemark1.C_Ctg_830015
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length156
Homology
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A836C829_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C829_9STRA)

HSP 1 Score: 301 bits (771), Expect = 2.340e-103
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MVLARRAFSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLEYVKGLGGALKGVRPGMAPHEVAA 156
            MVLARRAFSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLEYVKGLGGALKGVRPGMAPHEVAA
Sbjct:    1 MVLARRAFSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLEYVKGLGGALKGVRPGMAPHEVAA 156          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A2P4YM82_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YM82_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.600e-21
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 0
Query:   21 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQF------------AQQAALELQITGQPKLLEYVKGLGGALKGVRP 147
            +L+ W+  FVAG K L+ E+K +  LR++++  ETLT +E  LLRQ   D+  ++PL+  FCVP+LGYAAPL+G  FP+ LLP QFW   Q  QF             Q   L LQI  +   L+ +  L    +G+RP
Sbjct:   12 QLQKWLQPFVAGSKGLYLENKQAWALRRRVQKSETLTRREMLLLRQAHRDLLKSLPLLAFFCVPILGYAAPLLGYQFPKQLLPWQFWRPEQKTQFFREDVETRAQTYPQLTQLLLQIQHKDDTLKEMLALAEKTRGLRP 150          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A225VLH1_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLH1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.960e-20
Identity = 58/148 (39.19%), Postives = 83/148 (56.08%), Query Frame = 0
Query:   12 ASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAA------------LELQITGQPKLLEYVKGLGGALKGVRP 147
            A T  S   KL+ W+  FVAG K L+ E+K +  LR+++++ + L   E  LLRQ   D+  ++PL+  FCVP++GYAAPL+G  FP+ LLP QFW   Q  QF QQ              L LQI  +  +L+ +  L   + G+RP
Sbjct:   20 APTDLSLYQKLQKWMQPFVAGSKGLYLENKQAWALRRRVQNSKPLARCELLLLRQAHRDLLKSLPLLAFFCVPLVGYAAPLLGYQFPKQLLPWQFWRPDQKTQFCQQDVETRAQTYPQLKQLLLQIQHKDDVLKEMLALADRMGGLRP 167          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A3M6VR87_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VR87_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.350e-19
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 0
Query:   13 STSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGET---LTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLE 133
            ST  S   KL+ W+  FV G K+L++E+K +  LR++++D +    LT +E  LLRQ   D+  ++PL+  FCVP++GYAAPL+G  FP+ LLP QFW   Q  QF  + A + + T  P+L++
Sbjct:    2 STYLSFYQKLQKWLQPFVTGSKSLYHENKQAWTLRRRVQDSQNQMNLTRREMLLLRQAHRDLFKSLPLLAFFCVPLIGYAAPLLGYKFPKQLLPWQFWRPNQKTQFLHEDA-KTRATMYPQLVQ 124          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A833TDI3_PHYIN (LETM1-like protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TDI3_PHYIN)

HSP 1 Score: 89.4 bits (220), Expect = 2.810e-18
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 0
Query:   21 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRD--GET-LTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAA 120
            KL+ W+  FVAG K L+ E+K +  LR+++++  G+  LT +E  LLRQ   D+  ++PL+  FCVP+LGYAAPL+G  FP+ LLP QFW   Q  QF Q+ A
Sbjct:   43 KLQKWLQPFVAGSKGLYLENKEAWALRRRIKETNGQARLTRREMMLLRQAHRDLLKSLPLLAFFCVPLLGYAAPLLGYQFPKQLLPWQFWRPDQKTQFFQEDA 145          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: W2LKV1_PHYPR (Letm1 RBD domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2LKV1_PHYPR)

HSP 1 Score: 89.4 bits (220), Expect = 3.200e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   21 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGE---TLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQ 118
            KL+ W+  FVAG K L+ E+K +  LR+++++ +    LT +E  LLRQ   D+  ++P++  FCVP+LGYAAPL+G  FP+ LLP QFW   Q  QF Q+
Sbjct:   56 KLQKWLQPFVAGSKGLYNENKQAWALRRRMKESDGQANLTRREMMLLRQAHRDLLKSLPILAFFCVPLLGYAAPLLGYQFPKQLLPWQFWRPDQKTQFFQE 156          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A662XRW7_9STRA (Letm1 RBD domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRW7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.570e-18
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   17 STLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRD--GETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQF 115
            S   KL+ W+  FVAG K ++ ++K +  LR++++D  G  LT +E  LLRQ   D+  ++PL+  FCVP++GYAAPL+G  FP+ LLP QFW   Q  QF
Sbjct:   53 SAYQKLQKWLQPFVAGSKAMYQQNKQAWQLRRRVKDAGGADLTRREMLLLRQAHRDLLKSLPLLAFFCVPMVGYAAPLLGYQFPKQLLPWQFWRPDQKTQF 153          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A484E3J6_BRELC (Letm1 RBD domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3J6_BRELC)

HSP 1 Score: 88.6 bits (218), Expect = 4.840e-18
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 0
Query:   21 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRD--GET-LTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQ 118
            KL+ W+  FVAG K L++E+K +  LR+++++  G T LT +E  LLRQ   D+   +PL+V FCVP+LG AAPL+G  FP+ LLP QFW   Q  QF Q+
Sbjct:   34 KLQKWLQPFVAGTKGLFHENKQAWALRRRMKESKGRTHLTRREMLLLRQAHRDLLKCLPLLVFFCVPILGNAAPLLGYQFPKQLLPWQFWRPDQRTQFLQE 134          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: H3GXR6_PHYRM (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXR6_PHYRM)

HSP 1 Score: 88.6 bits (218), Expect = 5.070e-18
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 0
Query:   17 STLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGE---TLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLE 133
            S   KL+ W+  FVAG K L+ E+K +  LR++++D      L  +E  LLRQ   D+  ++P++  FCVP LGYAAPL+G  FP+ LLP QFW   Q  QF ++  +E + T  P+L++
Sbjct:   33 SAYQKLQKWLQPFVAGSKGLYLENKQAWALRRRVKDSRGQAQLARREMLLLRQAHRDLLKSLPILAFFCVPALGYAAPLLGYQFPKQLLPWQFWRPEQKTQFFRED-VESRATTYPQLVQ 151          
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: G4YLX4_PHYSP (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YLX4_PHYSP)

HSP 1 Score: 88.6 bits (218), Expect = 5.780e-18
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 0
Query:   21 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDG---ETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQP--KLLEYVKGLGGALK 143
            KL+ W+  FVAG K L++E+K +  LR+++++      L+ +E  LLRQ   D+  ++P++  FCVP+LGYAAPL+G  FP+ LLP QFW   Q  QF ++  L    T     +LL+ +    GALK
Sbjct:   46 KLQKWLQPFVAGSKGLYHENKEAWALRRRVKESGGQANLSRREMLLLRQAHRDLLKSLPILAFFCVPLLGYAAPLLGYQFPKQLLPWQFWRPDQKTQFFREDVLARAKTYPELAQLLQQIDHKDGALK 173          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351195 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C829_9STRA2.340e-103100.00LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A2P4YM82_9STRA1.600e-2141.01Letm1 RBD domain-containing protein n=1 Tax=Phytop... [more]
A0A225VLH1_9STRA5.960e-2039.19Letm1 RBD domain-containing protein n=1 Tax=Phytop... [more]
A0A3M6VR87_9STRA3.350e-1941.94Letm1 RBD domain-containing protein n=1 Tax=Perono... [more]
A0A833TDI3_PHYIN2.810e-1847.57LETM1-like protein n=1 Tax=Phytophthora infestans ... [more]
W2LKV1_PHYPR3.200e-1845.54Letm1 RBD domain-containing protein n=13 Tax=Phyto... [more]
A0A662XRW7_9STRA4.570e-1845.54Letm1 RBD domain-containing protein n=2 Tax=Nothop... [more]
A0A484E3J6_BRELC4.840e-1848.51Letm1 RBD domain-containing protein n=1 Tax=Bremia... [more]
H3GXR6_PHYRM5.070e-1841.67Letm1 RBD domain-containing protein n=1 Tax=Phytop... [more]
G4YLX4_PHYSP5.780e-1840.63Letm1 RBD domain-containing protein n=1 Tax=Phytop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011685LETM1-likePFAMPF07766LETM1coord: 21..118
e-value: 1.7E-19
score: 70.2
IPR044202LETM1/MDM38-likePANTHERPTHR14009LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEINcoord: 20..120
NoneNo IPR availablePANTHERPTHR14009:SF13LETM1 DOMAIN-CONTAINING PROTEIN 1coord: 20..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_83contigContig_83:189429..192579 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351195mRNA_11952Tribonema minus UTEX_B_3156 mRNAContig_83 189429..192647 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351195|estExt_Genemark1.C_Ctg_830015 ID=Trimin1|351195|estExt_Genemark1.C_Ctg_830015|Name=jgi.p|Trimin1|351195|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MVLARRAFSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKL
RDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRV
LLPPQFWTDAQHAQFAQQAALELQITGQPKLLEYVKGLGGALKGVRPGMA
PHEVAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011685LETM1-like
IPR044202LETM1/MDM38-like