mRNA_11952 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351195
Unique Name	mRNA_11952
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A836C829_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C829_9STRA)

HSP 1 Score: 302 bits (774), Expect = 1.990e-103
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 3

Query:   69 MVLARRAFSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLEYVKGLGGALKGVRPGMAPHEVAA 536
            MVLARRAFSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLEYVKGLGGALKGVRPGMAPHEVAA
Sbjct:    1 MVLARRAFSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLEYVKGLGGALKGVRPGMAPHEVAA 156

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A2P4YM82_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YM82_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.210e-21
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 3

Query:  129 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQF------------AQQAALELQITGQPKLLEYVKGLGGALKGVRP 509
            +L+ W+  FVAG K L+ E+K +  LR++++  ETLT +E  LLRQ   D+  ++PL+  FCVP+LGYAAPL+G  FP+ LLP QFW   Q  QF             Q   L LQI  +   L+ +  L    +G+RP
Sbjct:   12 QLQKWLQPFVAGSKGLYLENKQAWALRRRVQKSETLTRREMLLLRQAHRDLLKSLPLLAFFCVPILGYAAPLLGYQFPKQLLPWQFWRPEQKTQFFREDVETRAQTYPQLTQLLLQIQHKDDTLKEMLALAEKTRGLRP 150

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A225VLH1_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLH1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.100e-20
Identity = 58/148 (39.19%), Postives = 83/148 (56.08%), Query Frame = 3

Query:  102 ASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAA------------LELQITGQPKLLEYVKGLGGALKGVRP 509
            A T  S   KL+ W+  FVAG K L+ E+K +  LR+++++ + L   E  LLRQ   D+  ++PL+  FCVP++GYAAPL+G  FP+ LLP QFW   Q  QF QQ              L LQI  +  +L+ +  L   + G+RP
Sbjct:   20 APTDLSLYQKLQKWMQPFVAGSKGLYLENKQAWALRRRVQNSKPLARCELLLLRQAHRDLLKSLPLLAFFCVPLVGYAAPLLGYQFPKQLLPWQFWRPDQKTQFCQQDVETRAQTYPQLKQLLLQIQHKDDVLKEMLALADRMGGLRP 167

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A3M6VR87_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VR87_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.400e-19
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 3

Query:  105 STSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGET---LTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLE 467
            ST  S   KL+ W+  FV G K+L++E+K +  LR++++D +    LT +E  LLRQ   D+  ++PL+  FCVP++GYAAPL+G  FP+ LLP QFW   Q  QF  + A + + T  P+L++
Sbjct:    2 STYLSFYQKLQKWLQPFVTGSKSLYHENKQAWTLRRRVQDSQNQMNLTRREMLLLRQAHRDLFKSLPLLAFFCVPLIGYAAPLLGYKFPKQLLPWQFWRPNQKTQFLHEDA-KTRATMYPQLVQ 124

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A833TDI3_PHYIN (LETM1-like protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TDI3_PHYIN)

HSP 1 Score: 90.5 bits (223), Expect = 2.060e-18
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 3

Query:   90 FSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRD--GET-LTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAA 428
            F   A    S   KL+ W+  FVAG K L+ E+K +  LR+++++  G+  LT +E  LLRQ   D+  ++PL+  FCVP+LGYAAPL+G  FP+ LLP QFW   Q  QF Q+ A
Sbjct:   30 FLSAAPKELSLYQKLQKWLQPFVAGSKGLYLENKEAWALRRRIKETNGQARLTRREMMLLRQAHRDLLKSLPLLAFFCVPLLGYAAPLLGYQFPKQLLPWQFWRPDQKTQFFQEDA 145

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: H3GXR6_PHYRM (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXR6_PHYRM)

HSP 1 Score: 89.7 bits (221), Expect = 3.710e-18
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 3

Query:   90 FSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGE---TLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQPKLLE 467
            F   A    S   KL+ W+  FVAG K L+ E+K +  LR++++D      L  +E  LLRQ   D+  ++P++  FCVP LGYAAPL+G  FP+ LLP QFW   Q  QF ++  +E + T  P+L++
Sbjct:   24 FLSAAPKELSAYQKLQKWLQPFVAGSKGLYLENKQAWALRRRVKDSRGQAQLARREMLLLRQAHRDLLKSLPILAFFCVPALGYAAPLLGYQFPKQLLPWQFWRPEQKTQFFRED-VESRATTYPQLVQ 151

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: W2LKV1_PHYPR (Letm1 RBD domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2LKV1_PHYPR)

HSP 1 Score: 89.4 bits (220), Expect = 6.260e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 3

Query:  129 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDGE---TLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQ 422
            KL+ W+  FVAG K L+ E+K +  LR+++++ +    LT +E  LLRQ   D+  ++P++  FCVP+LGYAAPL+G  FP+ LLP QFW   Q  QF Q+
Sbjct:   56 KLQKWLQPFVAGSKGLYNENKQAWALRRRMKESDGQANLTRREMMLLRQAHRDLLKSLPILAFFCVPLLGYAAPLLGYQFPKQLLPWQFWRPDQKTQFFQE 156

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A662XRW7_9STRA (Letm1 RBD domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRW7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.940e-18
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 3

Query:  117 STLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRD--GETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQF 413
            S   KL+ W+  FVAG K ++ ++K +  LR++++D  G  LT +E  LLRQ   D+  ++PL+  FCVP++GYAAPL+G  FP+ LLP QFW   Q  QF
Sbjct:   53 SAYQKLQKWLQPFVAGSKAMYQQNKQAWQLRRRVKDAGGADLTRREMLLLRQAHRDLLKSLPLLAFFCVPMVGYAAPLLGYQFPKQLLPWQFWRPDQKTQF 153

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: A0A484E3J6_BRELC (Letm1 RBD domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3J6_BRELC)

HSP 1 Score: 88.6 bits (218), Expect = 9.460e-18
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 3

Query:  129 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRD--GET-LTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQ 422
            KL+ W+  FVAG K L++E+K +  LR+++++  G T LT +E  LLRQ   D+   +PL+V FCVP+LG AAPL+G  FP+ LLP QFW   Q  QF Q+
Sbjct:   34 KLQKWLQPFVAGTKGLFHENKQAWALRRRMKESKGRTHLTRREMLLLRQAHRDLLKCLPLLVFFCVPILGNAAPLLGYQFPKQLLPWQFWRPDQRTQFLQE 134

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BLAST of jgi.p|Trimin1|351195 vs. uniprot
Match: G4YLX4_PHYSP (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YLX4_PHYSP)

HSP 1 Score: 88.6 bits (218), Expect = 1.130e-17
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 3

Query:  129 KLRAWVSAFVAGGKTLWYEHKTSRLLRQKLRDG---ETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRVLLPPQFWTDAQHAQFAQQAALELQITGQP--KLLEYVKGLGGALK 497
            KL+ W+  FVAG K L++E+K +  LR+++++      L+ +E  LLRQ   D+  ++P++  FCVP+LGYAAPL+G  FP+ LLP QFW   Q  QF ++  L    T     +LL+ +    GALK
Sbjct:   46 KLQKWLQPFVAGSKGLYHENKEAWALRRRVKESGGQANLSRREMLLLRQAHRDLLKSLPILAFFCVPLLGYAAPLLGYQFPKQLLPWQFWRPDQKTQFFREDVLARAKTYPELAQLLQQIDHKDGALK 173

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351195 vs. uniprot

BLAST of jgi.p|Trimin1|351195 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
A0A836C829_9STRA	1.990e-103	100.00	LETM1 domain-containing protein n=1 Tax=Tribonema ...	[more]
A0A2P4YM82_9STRA	3.210e-21	41.01	Letm1 RBD domain-containing protein n=1 Tax=Phytop...	[more]
A0A225VLH1_9STRA	6.100e-20	39.19	Letm1 RBD domain-containing protein n=1 Tax=Phytop...	[more]
A0A3M6VR87_9STRA	3.400e-19	41.94	Letm1 RBD domain-containing protein n=1 Tax=Perono...	[more]
A0A833TDI3_PHYIN	2.060e-18	44.83	LETM1-like protein n=1 Tax=Phytophthora infestans ...	[more]
H3GXR6_PHYRM	3.710e-18	40.31	Letm1 RBD domain-containing protein n=1 Tax=Phytop...	[more]
W2LKV1_PHYPR	6.260e-18	45.54	Letm1 RBD domain-containing protein n=13 Tax=Phyto...	[more]
A0A662XRW7_9STRA	8.940e-18	45.54	Letm1 RBD domain-containing protein n=2 Tax=Nothop...	[more]
A0A484E3J6_BRELC	9.460e-18	48.51	Letm1 RBD domain-containing protein n=1 Tax=Bremia...	[more]
G4YLX4_PHYSP	1.130e-17	40.63	Letm1 RBD domain-containing protein n=1 Tax=Phytop...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_83	contig	Contig_83:189429..192647 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351195\|estExt_Genemark1.C_Ctg_830015
Description	LETM1-like protein
COG category	T
Max annot lvl	4776\|Peronosporales
EggNOG OGs	KOG4263@1\|root,KOG4263@2759\|Eukaryota,3Q8GN@4776\|Peronosporales
Evalue	4.56e-19
Seed ortholog	4792.ETI50871
Hectar predicted targeting category	signal anchor
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-28_000310.1
TranscriptId	351517
Track	FilteredModels1
ProteinId	351195

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351195	gene_11952	Tribonema minus UTEX_B_3156	gene	Contig_83 189429..192647 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351195	Trimin1\|351195\|estExt_Genemark1.C_Ctg_830015	Tribonema minus UTEX_B_3156	polypeptide	Contig_83 189429..192579 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11952_4	exon_11952_4	Tribonema minus UTEX_B_3156	exon	Contig_83 189429..189517 -
exon_11952_3	exon_11952_3	Tribonema minus UTEX_B_3156	exon	Contig_83 190003..190085 -
exon_11952_2	exon_11952_2	Tribonema minus UTEX_B_3156	exon	Contig_83 190650..190883 -
exon_11952_1	exon_11952_1	Tribonema minus UTEX_B_3156	exon	Contig_83 192518..192647 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11952	CDS_11952	Tribonema minus UTEX_B_3156	CDS	Contig_83 192518..192579 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_11952	UTR5_11952	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_83 192580..192647 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_83:189429..192647-
coding sequence from alignment at Contig_83:189429..192647-

spliced messenger RNA

>mRNA_11952 ID=mRNA_11952|Name=jgi.p|Trimin1|351195|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=536bp|location=Sequence derived from alignment at Contig_83:189429..192647- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGTTTGCAGGCCTCCGAGCCATACAGCCAAGTATGCTGGCGCGGGTTTG
CTGCTGTACACTGCTCCGATGGTCCTGGCGAGGAGGGCTTTCAGCGATGG
CGCGTCCACGTCTACGAGCACTCTGACCAAACTGCGCGCCTGGGTATCGG
CTTTTGTAGCGGGGGGCAAAACACTCTGGTATGAACACAAGACTTCCAGG
CTGTTGCGTCAGAAGCTGCGCGATGGTGAGACCCTTACAGGGAAAGAGCG
GCGCCTGCTTCGTCAGAATCCTGAGGACATCAAGCTAGCGATTCCCCTAG
TGGTGCTCTTCTGTGTGCCGGTGTTGGGCTACGCGGCGCCGCTGATAGGG
CTGGCTTTTCCCAGGGTACTCCTTCCGCCGCAGTTCTGGACGGATGCGCA
ACATGCTCAGTTTGCTCAACAAGCTGCGCTTGAGCTGCAGATCACAGGCC
AACCGAAGCTGCTGGAATACGTGAAGGGGCTAGGAGGTGCTCTGAAGGGA
GTAAGGCCAGGCATGGCCCCTCATGAGGTGGCAGCA

protein sequence of jgi.p|Trimin1|351195

>Trimin1|351195|estExt_Genemark1.C_Ctg_830015 ID=Trimin1|351195|estExt_Genemark1.C_Ctg_830015|Name=jgi.p|Trimin1|351195|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MVLARRAFSDGASTSTSTLTKLRAWVSAFVAGGKTLWYEHKTSRLLRQKL
RDGETLTGKERRLLRQNPEDIKLAIPLVVLFCVPVLGYAAPLIGLAFPRV
LLPPQFWTDAQHAQFAQQAALELQITGQPKLLEYVKGLGGALKGVRPGMA
PHEVAA

mRNA from alignment at Contig_83:189429..192647-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11952 ID=mRNA_11952|Name=jgi.p|Trimin1|351195|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3219bp|location=Sequence derived from alignment at Contig_83:189429..192647- (Tribonema minus UTEX_B_3156 )
GTGTTTGCAGGCCTCCGAGCCATACAGCCAAGTATGCTGGCGCGGGTTTG
CTGCTGTACACTGCTCCGATGGTCCTGGCGAGGAGGGCTTTCAGCGATGG
CGCGTCCACGTCTACGAGCACTCTGACCAAGTGAGTTAGAGCACACTGTT
TCTCTCGCACGCAGGATGAATCGCTGCGCGTCAAACTACGATGAATGGCA
AAAGGTCGACGAGCATTACCATGCAGCCCAGTAAACCCAATAGCAGGTCG
TGGGCACTTGCTGACCAGATGCTTCGGGTCACACGCTTTCTCGTGAATCG
TAGAATCGTAATGTATCGTGCAAATGATGCTAACAACATCGAATGACCAA
GCAAGCAGTTCTGGACGATTAAGAAACGAGGGAAAAAGCCTTCAACGAAG
GCTTCTGAACCTCACTCACTCGGTGATGTGTGGCTCCGTCAACCACGTGT
AAGACCGTTAGTGAGTCCGAAGCAGCATGCGATGTTCTCACACAGATTCA
TGCTGTCGTCCGCGATGGTGCTGTCGTGATGGTGACAGCATCAGGCACAT
GTGCATTTGCACCATGTCTCCAGCTTCTGTGCAGCGCCTGGCTTCAGCAC
ATATGCTCGTGGACCATGATAGTTTGTTCAGGTGGTGTTGTGCATTTTCA
CGACCGGCTGCACCATGCAAAAGTTAACTGCGGCAGTCACTAGCCGCAAG
TGGCTGTGCACCACTTGAGGTAAACGAGCTGCTGTTTGTAATAATTCATT
CTCATCGAACCAAAACAACCCAGCTAGCGAAGGCAGTGACAGCTTAGCAC
AGTTGACCACCCTCCCGCGTTGAGGATTGACACGACAGTTCGGTCAGTGC
TGTGCAGAATACCAGGTGAACAGCTATATGATATCATTTCACAACACGGC
TACAGTATTTGTTTGTCAAAGGAGACCAAGCAGTGCCCATCACCAATGAT
GATCATGAATGCTGTCTGATGGGGACTCTCATACTGCCAATGACCTTAAC
TACTCATGATGACCAACTCATCACCACACACAAACGATCAGTTACCAATT
GCCGGATGCAGCCAACTTCAGTCTGACTATCTGTGACCAGCTGATCATTG
CAGACCGCCGTCTAGGTAGTGATTACTCACGCAAGGCGAGTGACACCTTT
GTCTTTTGCTGGGATTGACCCCAAAATGCTGGTGATTTTGGATGTCTATT
GCCTGAGGGTTTGAGCCCCCAATGTTCCAGGGCATGGAGTACTAATTCCT
TGCAATCATGTGTGCGAGTTTGTGTTGTCAACTTCAAACACGTTCTACGT
CAGGACCAGGTTATTACGCCACCAGCCGTTTCAGCTCAGCTACAGCAGCC
ACATTGCAGATGGCAATCTGTGTGTGGTCATGAGACATTGCAGAGCCACA
GCTGCTGCTGCTGTCAATGCGTTTGAGCTGCCTGGCAAGGCACTTTGCGC
CTGCTGCTTTATTGTTAAATTGGCTCTCTGCACATGGGAATCAGTGCATA
GTGATTGTTCAACTCACATCACGATCGAGGACCTTGACTCACAATTGGCT
ATCCGTGTGCTCGTCTGGCATCTGTGCCATTGTGCAAGTCTCACCACAGT
CGATCGGTGCAGACCCGCTGCCTTTGCCAACATATCGACAATGTGTTCAA
CAGCTGAGTTTATGCAGCTGACACTGACCGACAAGGCTCAATAACTACCC
TTTGCTGCACACAACATATTTGCATGTGCCTGATAACGCCAATCACACTT
GCTTTTGCTTGCAGACTGCGCGCCTGGGTATCGGCTTTTGTAGCGGGGGG
CAAAACACTCTGGTATGAACACAAGACTTCCAGGCTGTTGCGTCAGAAGC
TGCGCGATGGTGAGACCCTTACAGGGAAAGAGCGGCGCCTGCTTCGTCAG
AATCCTGAGGACATCAAGCTAGCGATTCCCCTAGTGGTGCTCTTCTGTGT
GCCGGTGTTGGGCTACGCGGCGCCGCTGATAGGGCTGGCTTTTCCCAGGT
AAGCTGCAGAGCTGCTGACTGCGATGAAAACTAGCACGCGGAATCACATC
TCTGCTTGCGTGTGGTCGCATTTGCTGCGGAGCTCAAGCGCGTACTGCTA
TGGTGCATTCATGATGCAAACGGCAAATCAGAACACATCATATTGGCATG
AAGCATGTAACACCTGTGTGATGCATGTCTGTTGCATGCATGAACGGCAT
CTCATAGAAGAATCAAGCGTACACCACGATGCTATGCCTGTCATGAAGTC
ACCGGAATGTGCTGTGTATATACTTCGAAGTAGTGTTGCTCTGGTCCAGT
ATGTGTTGGAGTGTATGTGCAGTCGCAGCAGCACAACCCCTCACATTTTC
AACTTCTCGGTTGCAATAATCACAACTGTCAATCACGCTGAATTTGAAAC
AGCCCTGTCAACAATGTGACCAAAACCTACTAGTCACCCCGGATTCTGAT
GCTCTGCCTGATGGGTACCTTGGCAACTGTCTCTGCCTATGGTCATTTCC
TATGGTCCTTTCCTATGGTCACCGTGCATAGTTCGTGATACTGTGCTTTG
GTGGTGTGGCAGGGTACTCCTTCCGCCGCAGTTCTGGACGGATGCGCAAC
ATGCTCAGTTTGCTCAACAAGCTGCGCTTGAGCTGCAGATCACAGGTATG
CAATGCCAACGCTGCCGTGTTTGTAAACCACTGCATTGGAGCACACTGCC
AAGCAAGAGCATTCTGTTGCCTGGTCATGGCACAGTTCAAGGGAACTGAA
GGGCAGAACATCCCGTTTCATTTGCAGTTTCATGACCTCTGCCACATGGT
ACCATTGCCAGCGTCTCGTAAAGCACGCTGCTCTTGACAATGATATGTAA
ATGACCTGACCTTCTCCAAATGGCCAAACAATGAGTTTGAATATGTGCAC
ATGTATGCAAGTCATTGTCTTGCAAAAGTAGACATGGTAGGTAAACACCT
GCGTGTGTGCATTGCACAGCCCCCCCTGTATGCTAACTGCAGGCGGCATA
TGTGACCAATGTCATCATTGAAGTTGTGGACATAATTTGTTGTACTTGCT
GTGATCATCAAATTTGATGCCACTTGCCTTGCCTCAATGCACAATCAAAC
ATCGCCATTTCTGCTGCTGCTGTACAACAGGCCAACCGAAGCTGCTGGAA
TACGTGAAGGGGCTAGGAGGTGCTCTGAAGGGAGTAAGGCCAGGCATGGC
CCCTCATGAGGTGGCAGCA

Coding sequence (CDS) from alignment at Contig_83:189429..192647-

>mRNA_11952 ID=mRNA_11952|Name=jgi.p|Trimin1|351195|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_83:189429..192647- (Tribonema minus UTEX_B_3156 )
ATGGTCCTGGCGAGGAGGGCTTTCAGCGATGGCGCGTCCACGTCTACGAG
CACTCTGACCAAACTGCGCGCCTGGGTATCGGCTTTTGTAGCGGGGGGCA
AAACACTCTGGTATGAACACAAGACTTCCAGGCTGTTGCGTCAGAAGCTG
CGCGATGGTGAGACCCTTACAGGGAAAGAGCGGCGCCTGCTTCGTCAGAA
TCCTGAGGACATCAAGCTAGCGATTCCCCTAGTGGTGCTCTTCTGTGTGC
CGGTGTTGGGCTACGCGGCGCCGCTGATAGGGCTGGCTTTTCCCAGGGTA
CTCCTTCCGCCGCAGTTCTGGACGGATGCGCAACATGCTCAGTTTGCTCA
ACAAGCTGCGCTTGAGCTGCAGATCACAGGCCAACCGAAGCTGCTGGAAT
ACGTGAAGGGGCTAGGAGGTGCTCTGAAGGGAGTAAGGCCAGGCATGGCC
CCTCATGAGGTGGCAGCA