Trimin1|351037|estExt_Genemark1.C_Ctg_780064 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351037
Unique NameTrimin1|351037|estExt_Genemark1.C_Ctg_780064
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length361
Homology
BLAST of jgi.p|Trimin1|351037 vs. uniprot
Match: A0A835YK24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK24_9STRA)

HSP 1 Score: 607 bits (1564), Expect = 1.970e-217
Identity = 359/360 (99.72%), Postives = 359/360 (99.72%), Query Frame = 0
Query:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVAVVAYGVTYAAPLLLPAWQRAMDLFARDRPHATNERSSXXXXXXXXXXXXYWGGETDLGDGRAARGGGRKERHSNDPEHKGKSNVRDADELMAYDDDAAFEGLLQHQEKHGAAASSTLLDDEFPADLEQLEELEQEWAAAASKASFRGGSGAGKALADLEDHFQLGTRGNKQQQTAGKQEHSXXXXXXXXXXXXXEGDSPLQPWEEPVQEQAKGKGKRGGRKXKKGEAKQDERQGGESWLDRKLSSALGLGGGAGSSSSGARGGGRQ 360
            MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVAVVAYGVTYAAPLLLPAWQRAMDLFARDRPHATNERSSXXXXXXXXXXXXYWGGETDLGDGRAARGGGRKERHSNDPEHKGKSNVRDADELMAYDDDAAFEGLLQHQEKHGAAASSTLLDDEFPADLEQLEELEQEWAAAASKASFRGGSGAGKALADLEDHFQLGTRGNKQQQTAGKQEHSXXXXXXXXXXXXXEGDSPLQPWEEPVQEQAKGKGKRGGRK KKGEAKQDERQGGESWLDRKLSSALGLGGGAGSSSSGARGGGRQ
Sbjct:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVAVVAYGVTYAAPLLLPAWQRAMDLFARDRPHATNERSSXXXXXXXXXXXXYWGGETDLGDGRAARGGGRKERHSNDPEHKGKSNVRDADELMAYDDDAAFEGLLQHQEKHGAAASSTLLDDEFPADLEQLEELEQEWAAAASKASFRGGSGAGKALADLEDHFQLGTRGNKQQQTAGKQEHSXXXXXXXXXXXXXEGDSPLQPWEEPVQEQAKGKGKRGGRKGKKGEAKQDERQGGESWLDRKLSSALGLGGGAGSSSSGARGGGRQ 360          
BLAST of jgi.p|Trimin1|351037 vs. uniprot
Match: D7FHC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC4_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.540e-12
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRA---LAAIRGVAAGPVAV 75
            MRK L D L Y  +EV+DM+PQIAA+VIEK LPRPRAGMPIAWR+S R+  S+S      A   LAA+  V  G VAV
Sbjct:   82 MRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVQLLAGAVLAAVGAVVNGAVAV 159          
BLAST of jgi.p|Trimin1|351037 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.090e-10
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 0
Query:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAG---MPIAWRKSFRRRESASRGPSSRA---LAAIRGVAAGPVAV 75
            MRK L D L Y  +EV+DM+PQIAA+VIEK LPRPRAG   MPIAWR+S R+  S+S      A   LAA+  V  G VAV
Sbjct:  186 MRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGEECMPIAWRRSIRQTGSSSNPVQLLAGVVLAAVGAVVNGVVAV 266          
BLAST of jgi.p|Trimin1|351037 vs. uniprot
Match: A0A7S3MDN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDN6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.130e-8
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0
Query:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSF 47
            M+ TL D L Y  EEV DMEPQIA++VIE+ L RP+ GMP++WR+S+
Sbjct:   72 MKATLKDELGYLPEEVEDMEPQIASVVIERSLTRPKKGMPVSWRRSY 118          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351037 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YK24_9STRA1.970e-21799.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHC4_ECTSI1.540e-1258.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S7_9PHAE6.090e-1056.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3MDN6_9STRA1.130e-859.57Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..332
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_78contigContig_78:617191..620076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351037mRNA_12564Tribonema minus UTEX_B_3156 mRNAContig_78 617191..620393 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351037|estExt_Genemark1.C_Ctg_780064 ID=Trimin1|351037|estExt_Genemark1.C_Ctg_780064|Name=jgi.p|Trimin1|351037|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=361bp
MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRR
ESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVAVVAYGV
TYAAPLLLPAWQRAMDLFARDRPHATNERSSSSSTGGGSGSSSYWGGETD
LGDGRAARGGGRKERHSNDPEHKGKSNVRDADELMAYDDDAAFEGLLQHQ
EKHGAAASSTLLDDEFPADLEQLEELEQEWAAAASKASFRGGSGAGKALA
DLEDHFQLGTRGNKQQQTAGKQEHSLFWWGGSGKKQQEEGDSPLQPWEEP
VQEQAKGKGKRGGRKGKKGEAKQDERQGGESWLDRKLSSALGLGGGAGSS
SSGARGGGRQ*
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