mRNA_12564 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351037
Unique Name	mRNA_12564
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351037 vs. uniprot
Match: A0A835YK24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK24_9STRA)

HSP 1 Score: 610 bits (1572), Expect = 7.090e-217
Identity = 359/360 (99.72%), Postives = 359/360 (99.72%), Query Frame = 1

Query:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVAVVAYGVTYAAPLLLPAWQRAMDLFARDRPHATNERSSXXXXXXXXXXXXYWGGETDLGDGRAARGGGRKERHSNDPEHKGKSNVRDADELMAYDDDAAFEGLLQHQEKHGAAASSTLLDDEFPADLEQLEELEQEWAAAASKASFRGGSGAGKALADLEDHFQLGTRGNKQQQTAGKQEHSXXXXXXXXXXXXXEGDSPLQPWEEPVQEQAKGKGKRGGRKXKKGEAKQDERQGGESWLDRKLSSALGLGGGAGSSSSGARGGGRQ 1080
            MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVAVVAYGVTYAAPLLLPAWQRAMDLFARDRPHATNERSSXXXXXXXXXXXXYWGGETDLGDGRAARGGGRKERHSNDPEHKGKSNVRDADELMAYDDDAAFEGLLQHQEKHGAAASSTLLDDEFPADLEQLEELEQEWAAAASKASFRGGSGAGKALADLEDHFQLGTRGNKQQQTAGKQEHSXXXXXXXXXXXXXEGDSPLQPWEEPVQEQAKGKGKRGGRK KKGEAKQDERQGGESWLDRKLSSALGLGGGAGSSSSGARGGGRQ
Sbjct:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVAVVAYGVTYAAPLLLPAWQRAMDLFARDRPHATNERSSXXXXXXXXXXXXYWGGETDLGDGRAARGGGRKERHSNDPEHKGKSNVRDADELMAYDDDAAFEGLLQHQEKHGAAASSTLLDDEFPADLEQLEELEQEWAAAASKASFRGGSGAGKALADLEDHFQLGTRGNKQQQTAGKQEHSXXXXXXXXXXXXXEGDSPLQPWEEPVQEQAKGKGKRGGRKGKKGEAKQDERQGGESWLDRKLSSALGLGGGAGSSSSGARGGGRQ 360

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BLAST of jgi.p|Trimin1|351037 vs. uniprot
Match: D7FHC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC4_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.950e-12
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 1

Query:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRA---LAAIRGVAAGPVAV 225
            MRK L D L Y  +EV+DM+PQIAA+VIEK LPRPRAGMPIAWR+S R+  S+S      A   LAA+  V  G VAV
Sbjct:   82 MRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVQLLAGAVLAAVGAVVNGAVAV 159

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BLAST of jgi.p|Trimin1|351037 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.320e-9
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1

Query:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAG---MPIAWRKSFRRRESASRGPSSRA---LAAIRGVAAGPVAV 225
            MRK L D L Y  +EV+DM+PQIAA+VIEK LPRPRAG   MPIAWR+S R+  S+S      A   LAA+  V  G VAV
Sbjct:  186 MRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGEECMPIAWRRSIRQTGSSSNPVQLLAGVVLAAVGAVVNGVVAV 266

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BLAST of jgi.p|Trimin1|351037 vs. uniprot
Match: A0A7S3MDN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDN6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-8
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1

Query:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSF 141
            M+ TL D L Y  EEV DMEPQIA++VIE+ L RP+ GMP++WR+S+
Sbjct:   72 MKATLKDELGYLPEEVEDMEPQIASVVIERSLTRPKKGMPVSWRRSY 118

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351037 vs. uniprot

BLAST of jgi.p|Trimin1|351037 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A835YK24_9STRA	7.090e-217	99.72	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FHC4_ECTSI	2.950e-12	58.97	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K5S7_9PHAE	1.320e-9	56.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S3MDN6_9STRA	1.680e-8	59.57	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_78	contig	Contig_78:617191..620393 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351037\|estExt_Genemark1.C_Ctg_780064
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-03_003980.1
TranscriptId	351359
Track	FilteredModels1
ProteinId	351037

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351037	gene_12564	Tribonema minus UTEX_B_3156	gene	Contig_78 617191..620393 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351037	Trimin1\|351037\|estExt_Genemark1.C_Ctg_780064	Tribonema minus UTEX_B_3156	polypeptide	Contig_78 617191..620076 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12564_1	exon_12564_1	Tribonema minus UTEX_B_3156	exon	Contig_78 617191..617271 +
exon_12564_2	exon_12564_2	Tribonema minus UTEX_B_3156	exon	Contig_78 617666..618103 +
exon_12564_3	exon_12564_3	Tribonema minus UTEX_B_3156	exon	Contig_78 618933..619013 +
exon_12564_4	exon_12564_4	Tribonema minus UTEX_B_3156	exon	Contig_78 619594..620393 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12564	CDS_12564	Tribonema minus UTEX_B_3156	CDS	Contig_78 617191..617271 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12564	UTR3_12564	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_78 620077..620393 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_78:617191..620393+
coding sequence from alignment at Contig_78:617191..620393+

spliced messenger RNA

>mRNA_12564 ID=mRNA_12564|Name=jgi.p|Trimin1|351037|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1400bp|location=Sequence derived from alignment at Contig_78:617191..620393+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAAGACGCTCACGGACAGCCTGCATTACACAGAGGAGGAGGTGAA
CGACATGGAGCCTCAGATAGCAGCCATCGTGATTGAGAAGGGCCTGCCCC
GCCCTCGTGCTGGCATGCCGATAGCCTGGCGCAAGAGCTTCAGGCGCCGC
GAAAGCGCTTCCAGGGGCCCTTCCAGCCGAGCGCTGGCTGCAATCAGGGG
CGTGGCAGCAGGGCCGGTGGCAGTGTTCAGCAGCACAGCAGCAGTGCTCA
GGCGGGTGGCGCTGCCAGTTGCAGCGGTTGCAGTTGTTGCATACGGGGTC
ACCTACGCTGCGCCGCTGCTGCTGCCGGCTTGGCAACGGGCGATGGATTT
GTTTGCACGCGATCGACCGCACGCCACGAACGAACGCAGCAGCAGCAGCA
GCACTGGTGGCGGCAGCGGCAGCAGCAGCTACTGGGGAGGGGAGACAGAC
CTGGGGGATGGTCGTGCTGCCAGGGGGGGGGGAAGAAAGGAGCGACACTC
CAATGACCCGGAGCACAAGGGCAAGAGCAACGTTCGCGACGCAGACGAGC
TCATGGCATATGACGACGACGCAGCATTTGAGGGACTTCTGCAGCACCAG
GAGAAACATGGGGCTGCAGCGTCGTCGACGCTTCTAGATGACGAGTTTCC
AGCGGACCTAGAGCAGCTGGAGGAGCTAGAGCAGGAGTGGGCAGCAGCGG
CGTCAAAAGCGAGCTTTCGCGGCGGCAGCGGCGCCGGTAAGGCCCTGGCT
GACCTGGAAGACCACTTTCAACTGGGGACCAGAGGCAACAAGCAGCAACA
GACAGCAGGCAAGCAGGAACACTCCCTGTTTTGGTGGGGCGGCAGCGGCA
AGAAGCAACAAGAAGAGGGCGACTCTCCCCTTCAACCTTGGGAAGAACCC
GTTCAGGAGCAAGCGAAGGGGAAGGGGAAGAGGGGGGGCAGGAAGGGGAA
GAAGGGGGAGGCAAAGCAGGATGAACGACAAGGGGGCGAAAGCTGGCTGG
ACAGGAAGCTGAGCAGTGCACTAGGGCTTGGTGGCGGCGCTGGTTCTTCT
TCATCTGGGGCCAGAGGGGGTGGGCGGCAATAATACTCTCAAGTGCTTTG
CCAGCACCTGATCCACTGTGCTGTATGTGCATGAGTGCCATAAAGTGATG
GGGGCCCCAGTTGAAGTTGCAGTTCCAGCACCTTCTCCGCAGGAAGAGAG
CTGCAGGTACAGCAGAGTGGCAGACGTGTCATGAGAGCGTCTCGTTGCCG
CCCTGTTGCAGATCATTAGGTGGTGCATCAATGGTCCAGATGTGTCATAC
CGGCAATGGCCGTTGGCGTAGCGCCGGCAACAAACTGTGAGTAGAGGGAT
GTAAGTTTGGAGAGCACAATGACATTAAGCACATGTATGAACGAACACAG

protein sequence of jgi.p|Trimin1|351037

>Trimin1|351037|estExt_Genemark1.C_Ctg_780064 ID=Trimin1|351037|estExt_Genemark1.C_Ctg_780064|Name=jgi.p|Trimin1|351037|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=361bp
MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRR
ESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVAVVAYGV
TYAAPLLLPAWQRAMDLFARDRPHATNERSSSSSTGGGSGSSSYWGGETD
LGDGRAARGGGRKERHSNDPEHKGKSNVRDADELMAYDDDAAFEGLLQHQ
EKHGAAASSTLLDDEFPADLEQLEELEQEWAAAASKASFRGGSGAGKALA
DLEDHFQLGTRGNKQQQTAGKQEHSLFWWGGSGKKQQEEGDSPLQPWEEP
VQEQAKGKGKRGGRKGKKGEAKQDERQGGESWLDRKLSSALGLGGGAGSS
SSGARGGGRQ*

mRNA from alignment at Contig_78:617191..620393+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12564 ID=mRNA_12564|Name=jgi.p|Trimin1|351037|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3203bp|location=Sequence derived from alignment at Contig_78:617191..620393+ (Tribonema minus UTEX_B_3156 )
ATGCGCAAGACGCTCACGGACAGCCTGCATTACACAGAGGAGGAGGTGAA
CGACATGGAGCCTCAGATAGCAGCCATCGTGGTGAGTGAATGCTACAGAT
TGTAATAAAAAGCCCTGGTTCTGACAAGTGCTTTTGCATCACCAGGCGGT
GATTTTCTTGCCCAGACAAGTGACGGTTGGCGCTGATGTAGCGGTTGCTT
CTAGCAGTTTCTCCTGCTTTTTCAAGTGTGCAGAGCAAATTTTTGGTTCA
AAACCGTCAAGCCTGATCAATTGCTCGATCTTTTTTCAAGTGACCTGTGT
TTGACGCTAATCACAACAGTGCCTGCCAACAATCAATTGGTTGCAGAGTG
AATGCACACAATGTGACAGTTCACGAACCACTTTCTGCCCCATTGCAGAG
GTAATACACGGTACAAGTTGACAACCACCACTTAAAGGCAACATCCGATG
CATTACTTATTGTGTGCGTGCGCAGATTGAGAAGGGCCTGCCCCGCCCTC
GTGCTGGCATGCCGATAGCCTGGCGCAAGAGCTTCAGGCGCCGCGAAAGC
GCTTCCAGGGGCCCTTCCAGCCGAGCGCTGGCTGCAATCAGGGGCGTGGC
AGCAGGGCCGGTGGCAGTGTTCAGCAGCACAGCAGCAGTGCTCAGGCGGG
TGGCGCTGCCAGTTGCAGCGGTTGCAGTTGTTGCATACGGGGTCACCTAC
GCTGCGCCGCTGCTGCTGCCGGCTTGGCAACGGGCGATGGATTTGTTTGC
ACGCGATCGACCGCACGCCACGAACGAACGCAGCAGCAGCAGCAGCACTG
GTGGCGGCAGCGGCAGCAGCAGCTACTGGGGAGGGGAGACAGACCTGGGG
GATGGTCGTGCTGCCAGGGGGGGGGGAAGAAAGGAGCGACACTCCAATGA
CCCGGAGCACAAGGTGCGCGCTGGCAACGTTGATTTTTGGGATCTGATCC
GTAGCTCTGTGCTAGCATTGCTTGTGTGTTAATCAGTTCTATCGGAAAGC
CAGTTGGCTGTGCGGTCATTGTATTCGGGCGTTTTCAGCAGCTAGAGTTG
CCCAAAACTCGTTGAAGACTCATGGAATCAGATTGAACGTGGGACCTGCA
AGTGTATGCTCACGCATTTGCTTGCACAATTGTCAATTCACCACAACATC
GGCAAAATCGAGCAACAAGGTGTAGCCTCTGCTATGCATGGTGTGCATGC
CAAACTGTCGCTAACCCTCTTGACACTTGAATTGATACCTGCCGCAAAAG
TAACGTTACACATGCGCTGACGTCATGGAGTTATTGGACTGCTAACCGGA
ACACCAGTATCAGATATGTTCAGCATCAACTTGAACCTCAGTGCTGGTGC
AAGAAAATGGCATCTGCTGAACAACGGCAGCTTGGTCCCCCAGTAGCAGG
CAGCAGCTGCACTGCTTTTGGTACTTGGGGTAACACAATGAGTCGGCAAG
TAGTAGATTGCTGGAGATCTTGCAACAGACCACGTGCTGCTTGATGCAGA
GCCACACGATTCACTACGTAGATGCATGCGACCTATCTTCATGATGACTT
TGACAATTCAAAAGATCTTGAGTATGGCACCAGGTCATTCATGCCCTTGG
CGATCATCAACAATTGAGGGTTGGGCGTGGCAGCACCGCATCTAGCCATT
GCGTTGTACATGCCTGCTTTATATAATGTATGTTGGGCACTCTGCATATG
CAGGGACGGGGATCTGTTGCATCACGCAATCGCCGAAGTCAGGGCAAGAG
CAACGTTCGCGACGCAGACGAGCTCATGGCATATGACGACGACGCAGCAT
TTGAGGGACTTCTGCAGCACCAGGTAATGAACAAGTATTGAATTCTCGCA
AATTTTTGGGCATTGCACACTTTTTGGTTGGTGTCAGCCATGTCGTATCA
TGGTGGTGAATGGTGTCATGCAAGACAAAGGAATGGAAAAGACGGGCAGA
ACAACACAATGTAACCATGCCAAGTTGTAGACACACGCATTTATTGTCAG
CACCCTGACCTTGACCTGAATGTCCTGCGTATGTGCATTCAAAGGCAACT
TTTATGGGCCATGATTGCAGCAGCACGTTGGGCCCTTGACAGTGCTCTAT
GACAAGCACACTTATTTGCACCGTTGCTCAATCTGCACAAGTTGTATTGA
GCAAAACGAATGAGATTTGCGTATTCATCCAGCAAAAACGTGTTGGGTGA
GAGTCTGGGTGCGCTGAATGTAGGTGATCACTGTAACTTACAAAGGGCTG
CATGCAACCTGGCATCCAAGTACGCTCGTCACACTTCATGTTCCCGAGTC
TCCAGACAAGTGCGACCTGCATGGGACGTCAATTATTGAAGCTACCTCGT
AAAAGCAATAATAATCATTGATTGCGCACATTTGCTCGTCGTTTGTCCGT
CAGGAGAAACATGGGGCTGCAGCGTCGTCGACGCTTCTAGATGACGAGTT
TCCAGCGGACCTAGAGCAGCTGGAGGAGCTAGAGCAGGAGTGGGCAGCAG
CGGCGTCAAAAGCGAGCTTTCGCGGCGGCAGCGGCGCCGGTAAGGCCCTG
GCTGACCTGGAAGACCACTTTCAACTGGGGACCAGAGGCAACAAGCAGCA
ACAGACAGCAGGCAAGCAGGAACACTCCCTGTTTTGGTGGGGCGGCAGCG
GCAAGAAGCAACAAGAAGAGGGCGACTCTCCCCTTCAACCTTGGGAAGAA
CCCGTTCAGGAGCAAGCGAAGGGGAAGGGGAAGAGGGGGGGCAGGAAGGG
GAAGAAGGGGGAGGCAAAGCAGGATGAACGACAAGGGGGCGAAAGCTGGC
TGGACAGGAAGCTGAGCAGTGCACTAGGGCTTGGTGGCGGCGCTGGTTCT
TCTTCATCTGGGGCCAGAGGGGGTGGGCGGCAATAATACTCTCAAGTGCT
TTGCCAGCACCTGATCCACTGTGCTGTATGTGCATGAGTGCCATAAAGTG
ATGGGGGCCCCAGTTGAAGTTGCAGTTCCAGCACCTTCTCCGCAGGAAGA
GAGCTGCAGGTACAGCAGAGTGGCAGACGTGTCATGAGAGCGTCTCGTTG
CCGCCCTGTTGCAGATCATTAGGTGGTGCATCAATGGTCCAGATGTGTCA
TACCGGCAATGGCCGTTGGCGTAGCGCCGGCAACAAACTGTGAGTAGAGG
GATGTAAGTTTGGAGAGCACAATGACATTAAGCACATGTATGAACGAACA
CAG

Coding sequence (CDS) from alignment at Contig_78:617191..620393+

>mRNA_12564 ID=mRNA_12564|Name=jgi.p|Trimin1|351037|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1083bp|location=Sequence derived from alignment at Contig_78:617191..620393+ (Tribonema minus UTEX_B_3156 )
ATGCGCAAGACGCTCACGGACAGCCTGCATTACACAGAGGAGGAGGTGAA
CGACATGGAGCCTCAGATAGCAGCCATCGTGATTGAGAAGGGCCTGCCCC
GCCCTCGTGCTGGCATGCCGATAGCCTGGCGCAAGAGCTTCAGGCGCCGC
GAAAGCGCTTCCAGGGGCCCTTCCAGCCGAGCGCTGGCTGCAATCAGGGG
CGTGGCAGCAGGGCCGGTGGCAGTGTTCAGCAGCACAGCAGCAGTGCTCA
GGCGGGTGGCGCTGCCAGTTGCAGCGGTTGCAGTTGTTGCATACGGGGTC
ACCTACGCTGCGCCGCTGCTGCTGCCGGCTTGGCAACGGGCGATGGATTT
GTTTGCACGCGATCGACCGCACGCCACGAACGAACGCAGCAGCAGCAGCA
GCACTGGTGGCGGCAGCGGCAGCAGCAGCTACTGGGGAGGGGAGACAGAC
CTGGGGGATGGTCGTGCTGCCAGGGGGGGGGGAAGAAAGGAGCGACACTC
CAATGACCCGGAGCACAAGGGCAAGAGCAACGTTCGCGACGCAGACGAGC
TCATGGCATATGACGACGACGCAGCATTTGAGGGACTTCTGCAGCACCAG
GAGAAACATGGGGCTGCAGCGTCGTCGACGCTTCTAGATGACGAGTTTCC
AGCGGACCTAGAGCAGCTGGAGGAGCTAGAGCAGGAGTGGGCAGCAGCGG
CGTCAAAAGCGAGCTTTCGCGGCGGCAGCGGCGCCGGTAAGGCCCTGGCT
GACCTGGAAGACCACTTTCAACTGGGGACCAGAGGCAACAAGCAGCAACA
GACAGCAGGCAAGCAGGAACACTCCCTGTTTTGGTGGGGCGGCAGCGGCA
AGAAGCAACAAGAAGAGGGCGACTCTCCCCTTCAACCTTGGGAAGAACCC
GTTCAGGAGCAAGCGAAGGGGAAGGGGAAGAGGGGGGGCAGGAAGGGGAA
GAAGGGGGAGGCAAAGCAGGATGAACGACAAGGGGGCGAAAGCTGGCTGG
ACAGGAAGCTGAGCAGTGCACTAGGGCTTGGTGGCGGCGCTGGTTCTTCT
TCATCTGGGGCCAGAGGGGGTGGGCGGCAATAA