Trimin1|349147|estExt_Genemark1.C_Ctg_370057 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349147
Unique NameTrimin1|349147|estExt_Genemark1.C_Ctg_370057
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length173
Homology
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BLAST of jgi.p|Trimin1|349147 vs. uniprot
Match: A0A835YX59_9STRA (High mobility group box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX59_9STRA)

HSP 1 Score: 191 bits (484), Expect = 3.980e-59
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 
Query:    1 MARTKREGEAKEPTAKKPRKEKADKEDKIPIRPLSGFFQFGKSKRPELMEEYPGLKVGEIGQXXXXXXXXXXDDEKKVYTDEAHADWVAKGGPAAAAAAKEVKDAAXXXXXXXXXXXXXXXXXXXXGTKKPAAKKA 136
            MARTKREGEAKEPTAKKPRKEKADKEDKIPIRPLSGFFQFGKSKRPELMEEYPGLKVGEIGQXXXXXXXXXXDDEKKVYTDEAHADWVAKGGPAAAAAAKEVKDAAXXXXXXXXXXXXXXXXXXXXGTKKPAAKKA
Sbjct:    1 MARTKREGEAKEPTAKKPRKEKADKEDKIPIRPLSGFFQFGKSKRPELMEEYPGLKVGEIGQXXXXXXXXXXDDEKKVYTDEAHADWVAKGGPAAAAAAKEVKDAAXXXXXXXXXXXXXXXXXXXXGTKKPAAKKA 136
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349147 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YX59_9STRA3.980e-59100.00High mobility group box domain-containing protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..130
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 45..63
score: 37.23
coord: 63..82
score: 37.59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR48112HIGH MOBILITY GROUP PROTEIN DSP1coord: 8..153
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 30..87
e-value: 4.08715E-13
score: 59.1785
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 29..107
e-value: 4.0E-13
score: 59.6
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 30..88
e-value: 1.6E-16
score: 60.4
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 30..86
score: 14.063882
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 12..90
e-value: 1.2E-16
score: 62.6
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 15..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_37contigContig_37:481293..485467 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349147mRNA_7846Tribonema minus UTEX_B_3156 mRNAContig_37 481179..485611 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349147|estExt_Genemark1.C_Ctg_370057 ID=Trimin1|349147|estExt_Genemark1.C_Ctg_370057|Name=jgi.p|Trimin1|349147|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp
MARTKREGEAKEPTAKKPRKEKADKEDKIPIRPLSGFFQFGKSKRPELME
EYPGLKVGEIGQKLGELWREMGDDEKKVYTDEAHADWVAKGGPAAAAAAK
EVKDAAKATEKQAKKDAKAAEKEAKKGTKKPAAKKAAKAAPPPAEEEEEE
EDEGGEDAEGGEEEGGDEDDDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf