mRNA_7846 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349147 vs. uniprot
Match: A0A835YX59_9STRA (High mobility group box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX59_9STRA) HSP 1 Score: 191 bits (486), Expect = 4.290e-58 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 Query: 115 MARTKREGEAKEPTAKKPRKEKADKEDKIPIRPLSGFFQFGKSKRPELMEEYPGLKVGEIGQXXXXXXXXXXDDEKKVYTDEAHADWVAKGGPAAAAAAKEVKDAAXXXXXXXXXXXXXXXXXXXXGTKKPAAKKA 522 MARTKREGEAKEPTAKKPRKEKADKEDKIPIRPLSGFFQFGKSKRPELMEEYPGLKVGEIGQXXXXXXXXXXDDEKKVYTDEAHADWVAKGGPAAAAAAKEVKDAAXXXXXXXXXXXXXXXXXXXXGTKKPAAKKA Sbjct: 1 MARTKREGEAKEPTAKKPRKEKADKEDKIPIRPLSGFFQFGKSKRPELMEEYPGLKVGEIGQXXXXXXXXXXDDEKKVYTDEAHADWVAKGGPAAAAAAKEVKDAAXXXXXXXXXXXXXXXXXXXXGTKKPAAKKA 136
BLAST of jgi.p|Trimin1|349147 vs. uniprot
Match: A0A835Z4Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Z7_9STRA) HSP 1 Score: 815 bits (2104), Expect = 8.670e-284 Identity = 812/812 (100.00%), Postives = 812/812 (100.00%), Query Frame = 1 Query: 1 MAEPVAAAPAVAPASADAGAKVNGTTFAKSWECLSTAGKAVFSIDRCAVFRGKKQVILRVPICTATKKSTRTVRSHGYAMMDLDVYMNSSQQKQCTLLQPRRMTGSVSVIAKALNVNNTRLFWQLSWICAERSSLTRQLGAVVPPQAPAEPPMMPVHCLLMSNTPASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRYITAKRKCEAADAALATAVAHAAAQLEADAAGGKRQRCDSXXXXXXXXXXXXXXLLSAMAKTEGIDLRDLDVARVAAAAVARAQHSVLAARGSLLQLQLGGCRKGVGELEGAAPRMELSLLCSGVAALVETLQALSRDMRRTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPIFERADDSDADTPAASGLLCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGWRAAAAALAAPLPDLNGGHADVGALAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHAQQVDAATDPAAAWRSAHVWPTGFSEQPVAATTSAAAAADWRIAAVRELASPLPILQSATATKVTDGSEQPAAVACAMRIGSAQYVTGLSDASSGAVAXXXXXXXXXXXSLQTVAALDRQWGHEQQHSSTRTRAMQPHGTNKAVAAAEVAQAV 2436 MAEPVAAAPAVAPASADAGAKVNGTTFAKSWECLSTAGKAVFSIDRCAVFRGKKQVILRVPICTATKKSTRTVRSHGYAMMDLDVYMNSSQQKQCTLLQPRRMTGSVSVIAKALNVNNTRLFWQLSWICAERSSLTRQLGAVVPPQAPAEPPMMPVHCLLMSNTPASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRYITAKRKCEAADAALATAVAHAAAQLEADAAGGKRQRCDSXXXXXXXXXXXXXXLLSAMAKTEGIDLRDLDVARVAAAAVARAQHSVLAARGSLLQLQLGGCRKGVGELEGAAPRMELSLLCSGVAALVETLQALSRDMRRTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPIFERADDSDADTPAASGLLCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGWRAAAAALAAPLPDLNGGHADVGALAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHAQQVDAATDPAAAWRSAHVWPTGFSEQPVAATTSAAAAADWRIAAVRELASPLPILQSATATKVTDGSEQPAAVACAMRIGSAQYVTGLSDASSGAVAXXXXXXXXXXXSLQTVAALDRQWGHEQQHSSTRTRAMQPHGTNKAVAAAEVAQAV Sbjct: 1 MAEPVAAAPAVAPASADAGAKVNGTTFAKSWECLSTAGKAVFSIDRCAVFRGKKQVILRVPICTATKKSTRTVRSHGYAMMDLDVYMNSSQQKQCTLLQPRRMTGSVSVIAKALNVNNTRLFWQLSWICAERSSLTRQLGAVVPPQAPAEPPMMPVHCLLMSNTPASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRYITAKRKCEAADAALATAVAHAAAQLEADAAGGKRQRCDSXXXXXXXXXXXXXXLLSAMAKTEGIDLRDLDVARVAAAAVARAQHSVLAARGSLLQLQLGGCRKGVGELEGAAPRMELSLLCSGVAALVETLQALSRDMRRTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPIFERADDSDADTPAASGLLCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGWRAAAAALAAPLPDLNGGHADVGALAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHAQQVDAATDPAAAWRSAHVWPTGFSEQPVAATTSAAAAADWRIAAVRELASPLPILQSATATKVTDGSEQPAAVACAMRIGSAQYVTGLSDASSGAVAXXXXXXXXXXXSLQTVAALDRQWGHEQQHSSTRTRAMQPHGTNKAVAAAEVAQAV 812 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349147 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|349147 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7846 ID=mRNA_7846|Name=jgi.p|Trimin1|349147|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_37:481179..485611+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGCACCCAGCACCGACAAGCAGCGGACCAGCGCCGACAGCAGCCAGCAAback to top protein sequence of jgi.p|Trimin1|349147 >Trimin1|349147|estExt_Genemark1.C_Ctg_370057 ID=Trimin1|349147|estExt_Genemark1.C_Ctg_370057|Name=jgi.p|Trimin1|349147|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp MARTKREGEAKEPTAKKPRKEKADKEDKIPIRPLSGFFQFGKSKRPELMEback to top mRNA from alignment at Contig_37:481179..485611+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7846 ID=mRNA_7846|Name=jgi.p|Trimin1|349147|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4433bp|location=Sequence derived from alignment at Contig_37:481179..485611+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_37:481179..485611+ >mRNA_7846 ID=mRNA_7846|Name=jgi.p|Trimin1|349147|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_37:481179..485611+ (Tribonema minus UTEX_B_3156 )back to top |