Trimin1|348409|estExt_Genemark1.C_Ctg_230138 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348409
Unique NameTrimin1|348409|estExt_Genemark1.C_Ctg_230138
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length656
Homology
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A836CGU0_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGU0_9STRA)

HSP 1 Score: 956 bits (2471), Expect = 0.000e+0
Identity = 655/655 (100.00%), Postives = 655/655 (100.00%), Query Frame = 0
Query:    1 MGRLAMVLALAACADPAYELHWHVPAAFGSDVRVDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREEAHLARRAALRRAPAAAAAAAHTVLDHVAGAAVLVAGAPVFAITWALPPPPLPFLMRSGWGGCARRRDAAPAARTKIEAALDAVAGRIPCALSSTFGACFELAVGARGVVDAASDALRDPAESLNAAGAHVRHAIVDGLTTLLPATPDPADAAAAKRAAXXXXPRPTAGALLRXXXXXXXXXXXXXXRAVACPLATVLPAETDPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAARRAAGXXXXXXXXXXXXXXXXXXXXRAALPHVSVSIDARGAVLPAAARDSGGAFVFRGGGALSPLGAAVLYAIASLALLAATSAGAAARDCAVGRLATRRFSSAAXXXXXXXXXXXXXXXXXXXXXXXXXGGLVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLCSVLIVLLLTCATQG 655
            MGRLAMVLALAACADPAYELHWHVPAAFGSDVRVDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREEAHLARRAALRRAPAAAAAAAHTVLDHVAGAAVLVAGAPVFAITWALPPPPLPFLMRSGWGGCARRRDAAPAARTKIEAALDAVAGRIPCALSSTFGACFELAVGARGVVDAASDALRDPAESLNAAGAHVRHAIVDGLTTLLPATPDPADAAAAKRAAXXXXPRPTAGALLRXXXXXXXXXXXXXXRAVACPLATVLPAETDPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAARRAAGXXXXXXXXXXXXXXXXXXXXRAALPHVSVSIDARGAVLPAAARDSGGAFVFRGGGALSPLGAAVLYAIASLALLAATSAGAAARDCAVGRLATRRFSSAAXXXXXXXXXXXXXXXXXXXXXXXXXGGLVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLCSVLIVLLLTCATQG
Sbjct:    1 MGRLAMVLALAACADPAYELHWHVPAAFGSDVRVDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREEAHLARRAALRRAPAAAAAAAHTVLDHVAGAAVLVAGAPVFAITWALPPPPLPFLMRSGWGGCARRRDAAPAARTKIEAALDAVAGRIPCALSSTFGACFELAVGARGVVDAASDALRDPAESLNAAGAHVRHAIVDGLTTLLPATPDPADAAAAKRAAXXXXPRPTAGALLRXXXXXXXXXXXXXXRAVACPLATVLPAETDPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAARRAAGXXXXXXXXXXXXXXXXXXXXRAALPHVSVSIDARGAVLPAAARDSGGAFVFRGGGALSPLGAAVLYAIASLALLAATSAGAAARDCAVGRLATRRFSSAAXXXXXXXXXXXXXXXXXXXXXXXXXGGLVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLCSVLIVLLLTCATQG 655          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A024UE84_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE84_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.020e-13
Identity = 52/134 (38.81%), Postives = 67/134 (50.00%), Query Frame = 0
Query:   16 PAYELHWHVPAAFGS--DVRVDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLL 147
            P   +  HVPA FG+     V+K  L+   P DAC+ + N   +AG VAL+ RG CNF  KVLQAQ  GAKAV+V D+ +  +                 W V M G A     + IP+VFVS      L DL+
Sbjct:   29 PCCHVERHVPARFGNFYPKDVNKLELVAVRPFDACSRIRN--DIAGKVALMARGNCNFAHKVLQAQVAGAKAVVVMDSEHRVN---------------TSWVVTMIGDAGNATQVVIPSVFVSRAIGLRLLDLM 145          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A6G0ZAH2_APHCR (Protein goliath isoform X3 n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0ZAH2_APHCR)

HSP 1 Score: 76.6 bits (187), Expect = 5.830e-13
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0
Query:  541 LVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDAL 593
            +VGD  CC++C++ YR  + V  LPCRH+FHK CV PWL+    CP+CK D L
Sbjct:   75 IVGDGDCCAVCIEPYRPSEVVRILPCRHEFHKSCVDPWLLEHRTCPMCKMDIL 127          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A0M3J117_ANISI (Protein goliath (inferred by orthology to a D. melanogaster protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3J117_ANISI)

HSP 1 Score: 75.9 bits (185), Expect = 1.620e-12
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0
Query:  548 CSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGER 596
            C +C+D YR GD V ALPCRH FHK CV PWL+    CP+CKSD L  R
Sbjct:   66 CPVCIDPYRTGDIVRALPCRHVFHKTCVDPWLLEHRTCPMCKSDILKVR 114          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A6I8P6D3_ORNAN (RING-type domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8P6D3_ORNAN)

HSP 1 Score: 78.2 bits (191), Expect = 1.940e-12
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:  542 VGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLC 641
            V D+  C++CLD +     +  LPC H+FH+DCV PWL+    CPLCK + LGE P   A S RP      AAAA      +  E GDA +  GF    C
Sbjct:  141 VPDIQTCAVCLDRFCKNQFLRVLPCLHEFHRDCVDPWLLLQQTCPLCKHNILGEPPDPEAESGRPGRRAGPAAAAA----KAKEESGDAASPSGFPTGSC 236          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A7S1YXL5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXL5_TRICV)

HSP 1 Score: 75.1 bits (183), Expect = 2.790e-12
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0
Query:  544 DLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLV-RGGLCPLCKSD 591
            D GCC+IC++DY DGD +  LPCRH FH DC+ PWL  R   CPLCK++
Sbjct:   93 DEGCCTICIEDYGDGDVLCVLPCRHAFHYDCILPWLTERSPTCPLCKAE 141          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A5E4MWD5_9HEMI (RING-type domain-containing protein n=2 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4MWD5_9HEMI)

HSP 1 Score: 79.0 bits (193), Expect = 5.180e-12
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0
Query:  541 LVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDAL 593
            +VGD  CC++CL+ Y+  D V  LPCRH+FHK CV PWL+    CP+CK D L
Sbjct:  269 IVGDCDCCAVCLEPYKPSDVVRILPCRHEFHKSCVDPWLLEHRTCPMCKMDIL 321          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A8D0F6B5_STROC (RING-type domain-containing protein n=2 Tax=Neognathae TaxID=8825 RepID=A0A8D0F6B5_STROC)

HSP 1 Score: 74.7 bits (182), Expect = 5.220e-12
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0
Query:  544 DLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAH 602
            ++  C++CLD +     +  LPC H+FH+DCV PWL+    CPLCK + LGE PP GA 
Sbjct:   89 EIDSCAVCLDQFHKSQWLRVLPCSHEFHRDCVDPWLLLQQTCPLCKRNILGESPPLGAR 147          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A6G0TEQ3_APHGL (RING-type domain-containing protein (Fragment) n=2 Tax=Aphidini TaxID=33387 RepID=A0A6G0TEQ3_APHGL)

HSP 1 Score: 76.6 bits (187), Expect = 6.370e-12
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0
Query:  541 LVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDAL 593
            +VGD  CC++C++ YR  + V  LPCRH+FHK CV PWL+    CP+CK D L
Sbjct:   73 IVGDGDCCAVCIEPYRPSEVVRILPCRHEFHKSCVDPWLLEHRTCPMCKMDIL 125          
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A0K9RC92_SPIOL (RING-type domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RC92_SPIOL)

HSP 1 Score: 76.3 bits (186), Expect = 6.630e-12
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
Query:  544 DLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSD 591
            D+G C IC   YR+ D VT LPC HQ+HKDC++PWLV+  +CPLCK +
Sbjct:  181 DIGDCVICCTAYRNRDSVTTLPCAHQYHKDCIEPWLVKKRICPLCKKE 228          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348409 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGU0_9STRA0.000e+0100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A024UE84_9STRA3.020e-1338.81PA domain-containing protein n=1 Tax=Aphanomyces i... [more]
A0A6G0ZAH2_APHCR5.830e-1352.83Protein goliath isoform X3 n=1 Tax=Aphis craccivor... [more]
A0A0M3J117_ANISI1.620e-1261.22Protein goliath (inferred by orthology to a D. mel... [more]
A0A6I8P6D3_ORNAN1.940e-1242.00RING-type domain-containing protein n=1 Tax=Ornith... [more]
A0A7S1YXL5_TRICV2.790e-1259.18Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A5E4MWD5_9HEMI5.180e-1254.72RING-type domain-containing protein n=2 Tax=Cinara... [more]
A0A8D0F6B5_STROC5.220e-1247.46RING-type domain-containing protein n=2 Tax=Neogna... [more]
A0A6G0TEQ3_APHGL6.370e-1252.83RING-type domain-containing protein (Fragment) n=2... [more]
A0A0K9RC92_SPIOL6.630e-1258.33RING-type domain-containing protein n=1 Tax=Spinac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 548..588
e-value: 6.3E-9
score: 45.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 548..589
e-value: 3.9E-12
score: 46.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 548..589
score: 12.518784
NoneNo IPR availableGENE3D3.50.30.30coord: 16..159
e-value: 1.5E-22
score: 82.3
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 23..155
coord: 533..592
NoneNo IPR availablePANTHERPTHR22765:SF334RECEPTOR HOMOLOGY REGION, TRANSMEMBRANE DOMAIN- AND RING DOMAIN-CONTAINING PROTEIN 1coord: 23..155
coord: 533..592
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 547..589
e-value: 1.11986E-19
score: 80.4237
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 545..592
NoneNo IPR availableSUPERFAMILY52025PA domaincoord: 56..149
IPR003137PA domainPFAMPF02225PAcoord: 44..141
e-value: 6.0E-8
score: 32.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 536..593
e-value: 6.2E-17
score: 63.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:1176527..1181414 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348409mRNA_4991Tribonema minus UTEX_B_3156 mRNAContig_23 1176527..1181607 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348409|estExt_Genemark1.C_Ctg_230138 ID=Trimin1|348409|estExt_Genemark1.C_Ctg_230138|Name=jgi.p|Trimin1|348409|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=656bp
MGRLAMVLALAACADPAYELHWHVPAAFGSDVRVDKERLILASPADACTP
LSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCA
KAVIVGDTSNEADWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREE
AHLARRAALRRAPAAAAAAAHTVLDHVAGAAVLVAGAPVFAITWALPPPP
LPFLMRSGWGGCARRRDAAPAARTKIEAALDAVAGRIPCALSSTFGACFE
LAVGARGVVDAASDALRDPAESLNAAGAHVRHAIVDGLTTLLPATPDPAD
AAAAKRAAAAAAPRPTAGALLRDAAASIRAAAAHARRAVACPLATVLPAE
TDPEVAAAAPRPTAGALLRDAAASIRAAAAHARRAVARPLAAVLPAKTDP
EVAAAAAARRAAGAAGAPPPAAAAAARFAAAAARAALPHVSVSIDARGAV
LPAAARDSGGAFVFRGGGALSPLGAAVLYAIASLALLAATSAGAAARDCA
VGRLATRRFSSAAAAAAAAAGGGEGVAGEGEGEGEGQGGGLVGDLGCCSI
CLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRG
AHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLCSVLIVLLLT
CATQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR003137PA_domain
IPR013083Znf_RING/FYVE/PHD